Wall clock time and date at job start Mon Mar 8 2021 11:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99597 * 2 1 4 4 O 1.20829 * 120.00185 * 359.97438 * 3 2 1 5 5 C 1.50709 * 120.00026 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.84524 * 321.90056 * 5 3 2 7 7 S 1.65593 * 120.00058 * 288.84137 * 6 5 3 8 8 O 1.42100 * 106.40644 * 312.07858 * 7 6 5 9 9 O 1.42104 * 106.40218 * 179.15880 * 7 6 5 10 10 C 1.76199 * 107.21655 * 65.62200 * 7 6 5 11 11 C 1.33396 * 122.53782 * 257.73224 * 10 7 6 12 12 C 1.50694 * 125.20608 * 359.97438 * 11 10 7 13 13 S 1.75890 * 109.59122 * 180.23929 * 11 10 7 14 14 C 1.75888 * 90.96894 * 359.73767 * 13 11 10 15 15 C 1.50701 * 125.20304 * 180.02562 * 14 13 11 16 16 C 1.33383 * 109.59690 * 359.97438 * 14 13 11 17 17 C 1.50705 * 122.54249 * 180.02562 * 16 14 13 18 18 O 1.42904 * 109.46644 * 291.83219 * 17 16 14 19 19 Si 1.86294 * 109.47045 * 51.83201 * 17 16 14 20 20 C 1.53779 * 113.61424 * 190.70280 * 5 3 2 21 21 C 1.53782 * 87.08115 * 219.93411 * 20 5 3 22 22 O 1.42892 * 113.61638 * 270.80257 * 21 20 5 23 23 C 1.53003 * 113.61167 * 139.97902 * 21 20 5 24 24 F 1.39902 * 109.46958 * 60.00788 * 23 21 20 25 25 F 1.39895 * 109.46730 * 180.02562 * 23 21 20 26 26 F 1.39895 * 109.47420 * 300.00216 * 23 21 20 27 27 C 1.53776 * 87.07861 * 25.43474 * 21 20 5 28 28 H 1.09001 * 109.46407 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47386 * 299.99949 * 1 2 3 30 30 H 1.08997 * 109.46655 * 60.00436 * 1 2 3 31 31 H 0.96997 * 119.99735 * 108.85130 * 6 5 3 32 32 H 1.08996 * 109.46966 * 180.33096 * 12 11 10 33 33 H 1.09007 * 109.47149 * 300.33188 * 12 11 10 34 34 H 1.09001 * 109.47127 * 60.33086 * 12 11 10 35 35 H 1.09003 * 109.46947 * 264.93993 * 15 14 13 36 36 H 1.09005 * 109.46894 * 24.92866 * 15 14 13 37 37 H 1.08996 * 109.47636 * 144.93365 * 15 14 13 38 38 H 1.09001 * 109.47222 * 171.83570 * 17 16 14 39 39 H 0.96694 * 114.00086 * 56.26479 * 18 17 16 40 40 H 1.48498 * 110.00362 * 65.48003 * 19 17 16 41 41 H 1.48501 * 110.00075 * 186.80094 * 19 17 16 42 42 H 1.09002 * 113.61821 * 334.48372 * 20 5 3 43 43 H 1.09006 * 113.61162 * 105.38601 * 20 5 3 44 44 H 0.96702 * 114.00423 * 179.97438 * 22 21 20 45 45 H 1.08998 * 113.61666 * 220.01547 * 27 21 20 46 46 H 1.09006 * 113.61989 * 89.11517 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1897 0.2440 0.8341 7 16 4.0788 0.3342 2.4838 8 8 4.4231 1.6668 2.8370 9 8 4.7574 -0.8052 2.9945 10 6 2.3798 0.1311 2.9042 11 6 1.5956 1.1574 3.2377 12 6 2.0315 2.5984 3.3033 13 16 -0.0232 0.5705 3.5965 14 6 0.4687 -1.0835 3.2558 15 6 -0.4278 -2.2918 3.3423 16 6 1.7563 -1.1047 2.9082 17 6 2.4792 -2.3785 2.5531 18 8 2.6085 -3.1938 3.7196 19 14 1.5117 -3.3004 1.2552 20 6 4.1088 2.6899 0.2622 21 6 5.1739 2.3942 -0.8070 22 8 6.3588 1.7914 -0.2832 23 6 5.4675 3.5827 -1.7247 24 9 5.9311 4.6587 -0.9602 25 9 6.4429 3.2199 -2.6597 26 9 4.2969 3.9558 -2.3936 27 6 4.1798 1.3849 -1.4052 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.6675 -0.4914 0.4195 32 1 1.1890 3.2194 3.6076 33 1 2.8391 2.7011 4.0282 34 1 2.3818 2.9171 2.3215 35 1 -0.3127 -2.7603 4.3198 36 1 -1.4649 -1.9851 3.2064 37 1 -0.1543 -3.0037 2.5636 38 1 3.4695 -2.1384 2.1660 39 1 1.7679 -3.3990 4.1512 40 1 1.4828 -2.5192 -0.0073 41 1 2.1246 -4.6316 1.0149 42 1 3.4155 3.4825 -0.0196 43 1 4.5198 2.8218 1.2632 44 1 7.0323 1.6026 -0.9509 45 1 4.6481 0.4631 -1.7505 46 1 3.5059 1.8205 -2.1429 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:29 Heat of formation + Delta-G solvation = -296.404829 kcal Electronic energy + Delta-G solvation = -46095.495426 eV Core-core repulsion = 39986.362337 eV Total energy + Delta-G solvation = -6109.133089 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 446.065 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -51.31517 -48.84799 -48.78689 -42.52878 -40.66268 -40.27350 -38.72857 -37.68653 -37.26370 -37.16221 -36.84681 -34.22029 -33.95286 -30.90777 -29.60597 -28.50053 -28.11757 -27.58946 -25.93215 -25.59511 -23.28373 -22.58248 -21.57393 -20.85760 -20.31061 -20.16685 -19.65523 -19.58548 -19.09825 -18.99206 -18.62901 -18.19292 -17.96368 -17.49635 -17.30979 -17.00614 -16.42062 -16.30262 -15.96469 -15.89068 -15.72119 -15.63112 -15.32219 -15.22725 -15.22027 -15.09804 -14.95628 -14.91743 -14.67398 -14.59996 -14.46115 -14.25735 -14.13726 -14.12159 -13.98716 -13.86587 -13.66718 -13.44974 -13.31250 -13.21002 -13.14702 -12.97918 -12.81705 -12.73584 -12.65190 -12.31274 -12.13743 -11.89884 -11.86297 -11.84751 -11.74272 -11.54720 -10.89947 -10.49040 -9.94475 -9.44762 -4.93454 -0.99992 -0.48851 0.37179 0.64418 0.71284 0.86243 1.20036 1.30341 1.57635 1.63312 1.72928 2.02453 2.22521 2.38773 2.46627 2.47321 2.62865 2.80701 3.03830 3.22313 3.33883 3.41721 3.44414 3.54490 3.71533 3.89026 3.99208 4.08470 4.10192 4.17819 4.20017 4.22410 4.29222 4.42567 4.47848 4.52606 4.59648 4.63170 4.68152 4.70814 4.77378 4.89315 4.98314 5.04975 5.17432 5.28857 5.65579 6.27281 6.44520 6.70899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.339 6.339 3 C 0.457 3.543 4 O -0.497 6.497 5 C 0.164 3.836 6 N -1.071 6.071 7 S 2.705 3.295 8 O -0.959 6.959 9 O -0.971 6.971 10 C -0.694 4.694 11 C -0.065 4.065 12 C -0.117 4.117 13 S 0.201 5.799 14 C -0.185 4.185 15 C -0.088 4.088 16 C -0.070 4.070 17 C -0.083 4.083 18 O -0.548 6.548 19 Si 0.720 3.280 20 C -0.145 4.145 21 C 0.078 3.922 22 O -0.510 6.510 23 C 0.438 3.562 24 F -0.182 7.182 25 F -0.177 7.177 26 F -0.174 7.174 27 C -0.127 4.127 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.438 0.562 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.387 0.613 40 H -0.228 1.228 41 H -0.292 1.292 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.408 0.592 45 H 0.143 0.857 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -3.201 -3.081 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.254 6.254 3 C 0.297 3.703 4 O -0.384 6.384 5 C 0.072 3.928 6 N -0.833 5.833 7 S 2.796 3.204 8 O -0.949 6.949 9 O -0.961 6.961 10 C -0.796 4.796 11 C -0.187 4.187 12 C -0.175 4.175 13 S 0.468 5.532 14 C -0.303 4.303 15 C -0.144 4.144 16 C -0.080 4.080 17 C -0.193 4.193 18 O -0.355 6.355 19 Si 0.619 3.381 20 C -0.183 4.183 21 C 0.034 3.966 22 O -0.320 6.320 23 C 0.383 3.617 24 F -0.163 7.163 25 F -0.159 7.159 26 F -0.155 7.155 27 C -0.166 4.166 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.277 0.723 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.236 0.764 40 H -0.152 1.152 41 H -0.220 1.220 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.262 0.738 45 H 0.161 0.839 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.025 -2.213 -2.358 9.587 hybrid contribution 2.057 -0.231 -0.952 2.278 sum -6.968 -2.444 -3.310 8.092 Atomic orbital electron populations 1.23788 0.74991 1.05951 1.03317 1.86601 1.24674 1.31417 1.82688 1.23658 0.91126 0.82488 0.73052 1.90712 1.66221 1.36642 1.44816 1.20615 0.85074 0.90100 0.97019 1.54972 1.68242 1.35845 1.24241 1.01455 0.73703 0.73124 0.72155 1.93504 1.82419 1.37137 1.81846 1.93614 1.73031 1.52040 1.77427 1.29260 1.26400 0.99480 1.24469 1.24769 0.98023 0.99274 0.96612 1.21005 1.03557 0.87664 1.05291 1.84292 1.07059 0.98455 1.63444 1.24698 0.97314 0.99989 1.08309 1.20823 0.98822 0.91023 1.03775 1.18414 0.93842 0.93421 1.02322 1.25435 1.04894 0.91640 0.97336 1.86597 1.36510 1.69846 1.42577 0.94480 0.89408 0.76906 0.77262 1.24162 0.95405 0.95055 1.03643 1.23079 0.88729 0.90199 0.94640 1.86693 1.26463 1.80375 1.38435 1.21151 0.74566 0.85548 0.80407 1.93228 1.88950 1.58755 1.75403 1.93203 1.63729 1.91415 1.67529 1.93204 1.48177 1.92449 1.81705 1.24082 0.97041 1.02288 0.93147 0.85426 0.91395 0.91083 0.72312 0.88760 0.88125 0.89168 0.87077 0.87095 0.88758 0.88556 0.76381 1.15213 1.21965 0.84303 0.84751 0.73831 0.83943 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.34 0.47 8.29 -51.39 -0.43 0.05 16 3 C 0.46 0.18 5.52 71.24 0.39 0.57 16 4 O -0.50 -1.72 15.21 21.95 0.33 -1.39 16 5 C 0.16 -0.20 1.27 3.38 0.00 -0.19 16 6 N -1.07 0.00 4.99 -153.08 -0.76 -0.76 16 7 S 2.70 18.56 5.21 -56.49 -0.29 18.26 16 8 O -0.96 -8.78 11.50 -128.00 -1.47 -10.25 16 9 O -0.97 -13.33 15.43 -128.00 -1.98 -15.31 16 10 C -0.69 -2.73 4.06 21.22 0.09 -2.65 16 11 C -0.07 -0.12 6.04 24.59 0.15 0.03 16 12 C -0.12 -0.18 8.62 71.23 0.61 0.43 16 13 S 0.20 -0.70 22.12 -56.49 -1.25 -1.95 16 14 C -0.19 0.86 6.02 24.59 0.15 1.01 16 15 C -0.09 1.13 8.74 71.24 0.62 1.75 16 16 C -0.07 -0.08 4.13 -20.92 -0.09 -0.16 16 17 C -0.08 -0.27 2.34 71.24 0.17 -0.11 16 18 O -0.55 -2.79 12.85 -148.98 -1.91 -4.70 16 19 Si 0.72 -1.68 27.64 68.60 1.90 0.22 16 20 C -0.14 -0.11 5.25 31.12 0.16 0.06 16 21 C 0.08 -0.19 1.36 -10.27 -0.01 -0.20 16 22 O -0.51 1.48 12.92 -148.98 -1.92 -0.44 16 23 C 0.44 -0.02 2.85 71.98 0.21 0.18 16 24 F -0.18 -0.78 17.18 44.97 0.77 -0.01 16 25 F -0.18 0.14 16.65 44.97 0.75 0.89 16 26 F -0.17 -0.11 15.75 44.97 0.71 0.60 16 27 C -0.13 0.80 6.64 31.12 0.21 1.01 16 28 H 0.13 -1.32 7.57 -2.39 -0.02 -1.34 16 29 H 0.07 -0.34 6.88 -2.39 -0.02 -0.36 16 30 H 0.07 -0.39 8.13 -2.39 -0.02 -0.41 16 31 H 0.44 -1.96 8.83 -96.75 -0.85 -2.81 16 32 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 0.32 7.06 -2.38 -0.02 0.30 16 34 H 0.09 0.20 6.45 -2.39 -0.02 0.19 16 35 H 0.11 -1.74 7.67 -2.39 -0.02 -1.76 16 36 H 0.11 -1.84 8.14 -2.38 -0.02 -1.86 16 37 H 0.10 -1.37 3.19 -2.39 -0.01 -1.38 16 38 H 0.10 0.69 5.05 -2.39 -0.01 0.68 16 39 H 0.39 -1.85 7.13 -74.06 -0.53 -2.38 16 40 H -0.23 0.41 6.22 99.48 0.62 1.03 16 41 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 42 H 0.14 -0.04 7.09 -2.39 -0.02 -0.06 16 43 H 0.13 0.57 5.17 -2.38 -0.01 0.55 16 44 H 0.41 -4.26 8.42 -74.06 -0.62 -4.89 16 45 H 0.14 -1.67 8.11 -2.39 -0.02 -1.69 16 46 H 0.14 -1.04 7.09 -2.38 -0.02 -1.06 16 Total: 0.00 -27.69 392.63 -2.61 -30.30 By element: Atomic # 1 Polarization: -17.46 SS G_CDS: -0.91 Total: -18.37 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 3.86 Total: 2.86 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -0.76 Total: -0.76 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -7.38 Total: -32.04 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 2.23 Total: 1.48 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 1.90 Total: 0.22 kcal Atomic # 16 Polarization: 17.86 SS G_CDS: -1.54 Total: 16.31 kcal Total: -27.69 -2.61 -30.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.101 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds