Wall clock time and date at job start Mon Mar 8 2021 11:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99796 * 2 1 4 4 O 1.20833 * 119.99862 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00400 * 180.02562 * 3 2 1 6 6 N 1.46498 * 112.84493 * 327.98048 * 5 3 2 7 7 S 1.65600 * 120.00486 * 53.91107 * 6 5 3 8 8 O 1.42101 * 106.39991 * 24.95356 * 7 6 5 9 9 O 1.42104 * 106.40302 * 157.86608 * 7 6 5 10 10 C 1.76191 * 107.21842 * 271.40844 * 7 6 5 11 11 C 1.38215 * 120.00007 * 165.08222 * 10 7 6 12 12 C 1.50701 * 119.99854 * 359.97438 * 11 10 7 13 13 O 1.42897 * 109.47590 * 75.79101 * 12 11 10 14 14 Si 1.86297 * 109.47134 * 195.79058 * 12 11 10 15 15 C 1.38250 * 120.00274 * 180.02562 * 11 10 7 16 16 C 1.38225 * 120.00043 * 359.97438 * 15 11 10 17 17 C 1.38248 * 119.99454 * 359.97438 * 16 15 11 18 18 C 1.38208 * 120.00640 * 359.81295 * 17 16 15 19 19 C 1.53777 * 113.61795 * 196.78102 * 5 3 2 20 20 C 1.53782 * 87.08325 * 219.93110 * 19 5 3 21 21 O 1.42894 * 113.61685 * 270.80488 * 20 19 5 22 22 C 1.53002 * 113.61382 * 139.97599 * 20 19 5 23 23 F 1.39901 * 109.46822 * 60.00663 * 22 20 19 24 24 F 1.39902 * 109.46981 * 180.02562 * 22 20 19 25 25 F 1.39894 * 109.47313 * 300.00371 * 22 20 19 26 26 C 1.53779 * 113.69205 * 99.24421 * 5 3 2 27 27 H 1.09006 * 109.47313 * 299.99560 * 1 2 3 28 28 H 1.08997 * 109.47504 * 59.99808 * 1 2 3 29 29 H 1.09008 * 109.46861 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99896 * 233.91221 * 6 5 3 31 31 H 1.09004 * 109.47048 * 315.78988 * 12 11 10 32 32 H 0.96707 * 113.99707 * 305.08158 * 13 12 11 33 33 H 1.48507 * 110.00152 * 59.99830 * 14 12 11 34 34 H 1.48498 * 110.00279 * 181.31324 * 14 12 11 35 35 H 1.07999 * 120.00468 * 179.97438 * 15 11 10 36 36 H 1.07994 * 119.99991 * 179.97438 * 16 15 11 37 37 H 1.08001 * 119.99642 * 179.97438 * 17 16 15 38 38 H 1.08000 * 120.00869 * 180.22718 * 18 17 16 39 39 H 1.08997 * 113.61265 * 105.38645 * 19 5 3 40 40 H 1.08997 * 113.61617 * 334.48218 * 19 5 3 41 41 H 0.96700 * 114.00193 * 178.47151 * 21 20 19 42 42 H 1.08999 * 113.61939 * 25.44312 * 26 5 3 43 43 H 1.09008 * 113.61239 * 254.54338 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 4.1945 0.1616 0.7148 7 16 3.8187 -1.3997 0.3105 8 8 3.3826 -1.3703 -1.0416 9 8 4.9016 -2.2024 0.7605 10 6 2.4196 -1.8658 1.2747 11 6 1.6935 -2.9929 0.9390 12 6 2.0981 -3.8228 -0.2521 13 8 3.2481 -4.6035 0.0797 14 14 0.6956 -4.9537 -0.7262 15 6 0.5953 -3.3584 1.6952 16 6 0.2239 -2.5969 2.7873 17 6 0.9509 -1.4702 3.1237 18 6 2.0513 -1.1072 2.3704 19 6 4.1109 2.6543 0.4063 20 6 5.1690 2.4741 -0.6949 21 8 6.3571 1.8195 -0.2456 22 6 5.4573 3.7533 -1.4832 23 9 5.9260 4.7423 -0.6118 24 9 6.4267 3.4922 -2.4576 25 9 4.2826 4.1949 -2.1013 26 6 4.1709 1.5336 -1.3907 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 4.8307 0.3389 1.4253 31 1 2.3341 -3.1659 -1.0893 32 1 3.9937 -4.0843 0.4110 33 1 -0.5065 -4.1540 -1.0737 34 1 1.0933 -5.8000 -1.8798 35 1 0.0277 -4.2388 1.4326 36 1 -0.6342 -2.8822 3.3778 37 1 0.6604 -0.8749 3.9768 38 1 2.6214 -0.2291 2.6353 39 1 4.5282 2.6794 1.4129 40 1 3.4161 3.4720 0.2146 41 1 7.0169 1.6823 -0.9391 42 1 3.4925 2.0448 -2.0737 43 1 4.6367 0.6538 -1.8347 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18364790_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:36 Heat of formation + Delta-G solvation = -293.497893 kcal Electronic energy + Delta-G solvation = -42029.925024 eV Core-core repulsion = 36142.840981 eV Total energy + Delta-G solvation = -5887.084043 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.077 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -51.34194 -48.88051 -48.79314 -42.68158 -40.98305 -40.58917 -38.44997 -37.97094 -37.76300 -37.07818 -36.85352 -34.19801 -32.87776 -32.52059 -29.73010 -28.68911 -27.79241 -27.01635 -25.75643 -24.54408 -23.06863 -22.67761 -21.65873 -20.77146 -20.34852 -19.76611 -19.65111 -19.47781 -19.17367 -18.74612 -18.18808 -17.86518 -17.75789 -17.50801 -17.20261 -16.73091 -16.55788 -16.46237 -15.99786 -15.74401 -15.65583 -15.44717 -15.30656 -15.23773 -15.20393 -15.07200 -14.98479 -14.93680 -14.81535 -14.46788 -14.35769 -14.11689 -13.88314 -13.75198 -13.63770 -13.43281 -13.37306 -13.33647 -13.20619 -13.04277 -12.83662 -12.50169 -12.33153 -12.09455 -12.03854 -11.93873 -11.71282 -11.54541 -11.11416 -11.02602 -10.44508 -10.13600 -4.93760 -0.93482 -0.38250 0.01444 0.65351 1.07352 1.28524 1.42445 1.46827 1.57504 1.98967 2.00667 2.22263 2.25799 2.30818 2.38271 2.49987 2.63497 3.02349 3.18800 3.25444 3.27896 3.30061 3.46075 3.66956 3.73681 3.78684 3.91063 3.97572 4.01017 4.02372 4.06127 4.10042 4.19653 4.29813 4.34319 4.41472 4.44604 4.47493 4.63498 4.80505 5.01658 5.02488 5.13372 5.41982 5.58323 5.84397 6.27753 6.37763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.461 3.539 4 O -0.478 6.478 5 C 0.176 3.824 6 N -1.084 6.084 7 S 2.690 3.310 8 O -0.935 6.935 9 O -0.947 6.947 10 C -0.631 4.631 11 C -0.012 4.012 12 C -0.145 4.145 13 O -0.531 6.531 14 Si 0.758 3.242 15 C -0.123 4.123 16 C -0.061 4.061 17 C -0.131 4.131 18 C -0.027 4.027 19 C -0.095 4.095 20 C 0.066 3.934 21 O -0.504 6.504 22 C 0.439 3.561 23 F -0.170 7.170 24 F -0.178 7.178 25 F -0.170 7.170 26 C -0.153 4.153 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.433 0.567 31 H 0.108 0.892 32 H 0.366 0.634 33 H -0.246 1.246 34 H -0.249 1.249 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.398 0.602 42 H 0.128 0.872 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 0.393 4.056 5.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.266 6.266 3 C 0.300 3.700 4 O -0.363 6.363 5 C 0.084 3.916 6 N -0.844 5.844 7 S 2.780 3.220 8 O -0.925 6.925 9 O -0.937 6.937 10 C -0.719 4.719 11 C -0.014 4.014 12 C -0.252 4.252 13 O -0.339 6.339 14 Si 0.654 3.346 15 C -0.142 4.142 16 C -0.079 4.079 17 C -0.150 4.150 18 C -0.046 4.046 19 C -0.134 4.134 20 C 0.022 3.978 21 O -0.312 6.312 22 C 0.384 3.616 23 F -0.151 7.151 24 F -0.159 7.159 25 F -0.151 7.151 26 C -0.192 4.192 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.270 0.730 31 H 0.125 0.875 32 H 0.217 0.783 33 H -0.171 1.171 34 H -0.173 1.173 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.249 0.751 42 H 0.146 0.854 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.267 -0.534 3.043 5.268 hybrid contribution 1.030 1.931 0.006 2.189 sum -3.237 1.397 3.049 4.661 Atomic orbital electron populations 1.23351 0.74746 1.04247 1.03073 1.86611 1.25000 1.31826 1.83160 1.23337 0.90543 0.82740 0.73339 1.90742 1.65614 1.36036 1.43899 1.20479 0.85265 0.89763 0.96074 1.55252 1.56780 1.21664 1.50697 1.02245 0.73692 0.71698 0.74338 1.93593 1.82422 1.84985 1.31492 1.93648 1.51886 1.65362 1.82797 1.30431 1.22791 1.05606 1.13027 1.19780 0.93931 0.92229 0.95422 1.26361 0.99548 1.02631 0.96626 1.86808 1.23451 1.36179 1.87467 0.93003 0.74232 0.82097 0.85235 1.21114 0.96874 1.00174 0.96007 1.21460 0.98258 0.93244 0.94977 1.21292 0.95694 0.97750 1.00254 1.20738 0.95773 0.96572 0.91538 1.23472 0.94461 0.94898 1.00521 1.23251 0.88519 0.88973 0.97083 1.86601 1.26818 1.78233 1.39522 1.20933 0.74789 0.87066 0.78798 1.93249 1.88643 1.64388 1.68856 1.93213 1.64093 1.93898 1.64700 1.93225 1.47642 1.90612 1.83653 1.24295 0.97885 1.01691 0.95333 0.91276 0.91095 0.88021 0.73010 0.87509 0.78302 1.17070 1.17307 0.84231 0.84480 0.84826 0.85342 0.86329 0.84145 0.75065 0.85357 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.05 10.45 101.05 1.06 1.01 16 2 O -0.35 -0.03 3.79 -46.09 -0.17 -0.21 16 3 C 0.46 0.08 7.08 36.00 0.25 0.34 16 4 O -0.48 -0.91 15.69 -18.76 -0.29 -1.20 16 5 C 0.18 -0.25 1.02 -132.17 -0.13 -0.39 16 6 N -1.08 2.13 4.18 0.26 0.00 2.13 16 7 S 2.69 2.77 4.08 -107.50 -0.44 2.33 16 8 O -0.93 -2.54 12.55 -65.67 -0.82 -3.36 16 9 O -0.95 -3.12 15.87 -57.30 -0.91 -4.03 16 10 C -0.63 -0.22 3.52 -39.58 -0.14 -0.36 16 11 C -0.01 -0.01 5.22 -104.63 -0.55 -0.56 16 12 C -0.14 -0.32 2.10 36.01 0.08 -0.24 16 13 O -0.53 -2.00 12.68 -35.23 -0.45 -2.45 16 14 Si 0.76 0.15 30.18 -169.99 -5.13 -4.98 16 15 C -0.12 0.17 8.66 -39.58 -0.34 -0.17 16 16 C -0.06 0.17 10.05 -39.58 -0.40 -0.23 16 17 C -0.13 0.34 10.05 -39.59 -0.40 -0.06 16 18 C -0.03 0.04 8.02 -39.58 -0.32 -0.27 16 19 C -0.10 0.26 6.39 -25.92 -0.17 0.10 16 20 C 0.07 -0.14 1.35 -89.80 -0.12 -0.27 16 21 O -0.50 1.48 12.88 -35.23 -0.45 1.03 16 22 C 0.44 -0.32 2.85 37.16 0.11 -0.21 16 23 F -0.17 -0.07 17.18 2.25 0.04 -0.03 16 24 F -0.18 0.06 16.68 2.25 0.04 0.10 16 25 F -0.17 -0.03 15.75 2.25 0.04 0.01 16 26 C -0.15 0.23 6.25 -25.92 -0.16 0.07 16 27 H 0.07 -0.14 8.13 -51.93 -0.42 -0.56 16 28 H 0.07 -0.08 8.13 -51.93 -0.42 -0.51 16 29 H 0.10 -0.23 8.14 -51.92 -0.42 -0.65 16 30 H 0.43 -1.78 8.72 -34.47 -0.30 -2.08 16 31 H 0.11 0.31 5.49 -51.93 -0.29 0.02 16 32 H 0.37 1.24 6.07 45.56 0.28 1.51 16 33 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 34 H -0.25 -0.76 7.11 56.52 0.40 -0.35 16 35 H 0.14 -0.51 5.16 -52.49 -0.27 -0.78 16 36 H 0.14 -0.71 8.06 -52.49 -0.42 -1.13 16 37 H 0.13 -0.60 8.06 -52.49 -0.42 -1.02 16 38 H 0.13 -0.49 7.34 -52.49 -0.39 -0.87 16 39 H 0.12 -0.54 8.10 -51.93 -0.42 -0.96 16 40 H 0.14 -0.37 7.09 -51.93 -0.37 -0.74 16 41 H 0.40 -2.19 8.46 45.56 0.39 -1.81 16 42 H 0.13 -0.23 7.09 -51.93 -0.37 -0.60 16 43 H 0.12 -0.19 7.44 -51.92 -0.39 -0.58 16 LS Contribution 370.22 15.07 5.58 5.58 Total: 0.00 -9.53 370.22 -7.65 -17.17 By element: Atomic # 1 Polarization: -7.39 SS G_CDS: -3.43 Total: -10.83 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.23 Total: -1.25 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: 0.00 Total: 2.13 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -3.10 Total: -10.23 kcal Atomic # 9 Polarization: -0.04 SS G_CDS: 0.11 Total: 0.07 kcal Atomic # 14 Polarization: 0.15 SS G_CDS: -5.13 Total: -4.98 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -0.44 Total: 2.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -9.53 -7.65 -17.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -276.326 kcal (2) G-P(sol) polarization free energy of solvation -9.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds