Wall clock time and date at job start Mon Mar 8 2021 11:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99796 * 2 1 4 4 O 1.20833 * 119.99862 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00400 * 180.02562 * 3 2 1 6 6 N 1.46498 * 112.84493 * 327.98048 * 5 3 2 7 7 S 1.65600 * 120.00486 * 53.91107 * 6 5 3 8 8 O 1.42101 * 106.39991 * 24.95356 * 7 6 5 9 9 O 1.42104 * 106.40302 * 157.86608 * 7 6 5 10 10 C 1.76191 * 107.21842 * 271.40844 * 7 6 5 11 11 C 1.38215 * 120.00007 * 165.08222 * 10 7 6 12 12 C 1.50701 * 119.99854 * 359.97438 * 11 10 7 13 13 O 1.42897 * 109.47590 * 75.79101 * 12 11 10 14 14 Si 1.86297 * 109.47134 * 195.79058 * 12 11 10 15 15 C 1.38250 * 120.00274 * 180.02562 * 11 10 7 16 16 C 1.38225 * 120.00043 * 359.97438 * 15 11 10 17 17 C 1.38248 * 119.99454 * 359.97438 * 16 15 11 18 18 C 1.38208 * 120.00640 * 359.81295 * 17 16 15 19 19 C 1.53777 * 113.61795 * 196.78102 * 5 3 2 20 20 C 1.53782 * 87.08325 * 219.93110 * 19 5 3 21 21 O 1.42894 * 113.61685 * 270.80488 * 20 19 5 22 22 C 1.53002 * 113.61382 * 139.97599 * 20 19 5 23 23 F 1.39901 * 109.46822 * 60.00663 * 22 20 19 24 24 F 1.39902 * 109.46981 * 180.02562 * 22 20 19 25 25 F 1.39894 * 109.47313 * 300.00371 * 22 20 19 26 26 C 1.53779 * 113.69205 * 99.24421 * 5 3 2 27 27 H 1.09006 * 109.47313 * 299.99560 * 1 2 3 28 28 H 1.08997 * 109.47504 * 59.99808 * 1 2 3 29 29 H 1.09008 * 109.46861 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99896 * 233.91221 * 6 5 3 31 31 H 1.09004 * 109.47048 * 315.78988 * 12 11 10 32 32 H 0.96707 * 113.99707 * 305.08158 * 13 12 11 33 33 H 1.48507 * 110.00152 * 59.99830 * 14 12 11 34 34 H 1.48498 * 110.00279 * 181.31324 * 14 12 11 35 35 H 1.07999 * 120.00468 * 179.97438 * 15 11 10 36 36 H 1.07994 * 119.99991 * 179.97438 * 16 15 11 37 37 H 1.08001 * 119.99642 * 179.97438 * 17 16 15 38 38 H 1.08000 * 120.00869 * 180.22718 * 18 17 16 39 39 H 1.08997 * 113.61265 * 105.38645 * 19 5 3 40 40 H 1.08997 * 113.61617 * 334.48218 * 19 5 3 41 41 H 0.96700 * 114.00193 * 178.47151 * 21 20 19 42 42 H 1.08999 * 113.61939 * 25.44312 * 26 5 3 43 43 H 1.09008 * 113.61239 * 254.54338 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 4.1945 0.1616 0.7148 7 16 3.8187 -1.3997 0.3105 8 8 3.3826 -1.3703 -1.0416 9 8 4.9016 -2.2024 0.7605 10 6 2.4196 -1.8658 1.2747 11 6 1.6935 -2.9929 0.9390 12 6 2.0981 -3.8228 -0.2521 13 8 3.2481 -4.6035 0.0797 14 14 0.6956 -4.9537 -0.7262 15 6 0.5953 -3.3584 1.6952 16 6 0.2239 -2.5969 2.7873 17 6 0.9509 -1.4702 3.1237 18 6 2.0513 -1.1072 2.3704 19 6 4.1109 2.6543 0.4063 20 6 5.1690 2.4741 -0.6949 21 8 6.3571 1.8195 -0.2456 22 6 5.4573 3.7533 -1.4832 23 9 5.9260 4.7423 -0.6118 24 9 6.4267 3.4922 -2.4576 25 9 4.2826 4.1949 -2.1013 26 6 4.1709 1.5336 -1.3907 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 4.8307 0.3389 1.4253 31 1 2.3341 -3.1659 -1.0893 32 1 3.9937 -4.0843 0.4110 33 1 -0.5065 -4.1540 -1.0737 34 1 1.0933 -5.8000 -1.8798 35 1 0.0277 -4.2388 1.4326 36 1 -0.6342 -2.8822 3.3778 37 1 0.6604 -0.8749 3.9768 38 1 2.6214 -0.2291 2.6353 39 1 4.5282 2.6794 1.4129 40 1 3.4161 3.4720 0.2146 41 1 7.0169 1.6823 -0.9391 42 1 3.4925 2.0448 -2.0737 43 1 4.6367 0.6538 -1.8347 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:35 Heat of formation + Delta-G solvation = -297.112057 kcal Electronic energy + Delta-G solvation = -42030.081746 eV Core-core repulsion = 36142.840981 eV Total energy + Delta-G solvation = -5887.240765 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.077 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.31749 -48.85918 -48.78300 -42.60657 -40.87514 -40.49732 -38.56969 -38.06994 -37.74879 -37.09572 -36.82732 -34.08110 -32.79485 -32.35731 -29.64240 -28.59329 -27.62590 -27.01796 -25.68768 -24.39125 -23.00432 -22.59987 -21.56100 -20.73482 -20.26839 -19.74187 -19.62020 -19.46150 -19.11341 -18.74569 -18.25231 -17.82635 -17.69518 -17.40485 -17.14177 -16.72271 -16.48573 -16.40389 -15.91621 -15.71567 -15.63607 -15.39136 -15.23745 -15.22271 -15.14144 -15.06333 -14.96784 -14.91604 -14.72507 -14.43846 -14.34054 -14.04400 -13.78982 -13.63936 -13.57499 -13.47462 -13.40395 -13.30388 -13.22742 -12.91953 -12.75024 -12.35510 -12.29861 -12.16383 -11.98395 -11.91690 -11.60590 -11.55076 -11.20977 -10.97700 -10.29500 -9.99790 -4.98210 -0.95720 -0.25324 0.17591 0.67268 1.15782 1.21547 1.49322 1.51087 1.54479 1.92461 2.18650 2.32573 2.36567 2.42500 2.46130 2.60813 2.74211 3.05658 3.22651 3.30430 3.33038 3.37540 3.53086 3.71644 3.88379 3.94478 4.05180 4.11575 4.15508 4.19486 4.22789 4.26900 4.37379 4.40190 4.52542 4.57359 4.60835 4.62704 4.80051 4.98453 5.07725 5.22322 5.33855 5.65212 5.80011 6.15180 6.17706 6.30748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.462 3.538 4 O -0.498 6.498 5 C 0.175 3.825 6 N -1.071 6.071 7 S 2.694 3.306 8 O -0.960 6.960 9 O -0.978 6.978 10 C -0.641 4.641 11 C -0.033 4.033 12 C -0.168 4.168 13 O -0.545 6.545 14 Si 0.829 3.171 15 C -0.130 4.130 16 C -0.056 4.056 17 C -0.130 4.130 18 C -0.034 4.034 19 C -0.091 4.091 20 C 0.076 3.924 21 O -0.506 6.506 22 C 0.437 3.563 23 F -0.176 7.176 24 F -0.181 7.181 25 F -0.176 7.176 26 C -0.161 4.161 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.443 0.557 31 H 0.092 0.908 32 H 0.364 0.636 33 H -0.242 1.242 34 H -0.296 1.296 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.409 0.591 42 H 0.128 0.872 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 0.842 5.943 7.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.303 3.697 4 O -0.384 6.384 5 C 0.083 3.917 6 N -0.833 5.833 7 S 2.787 3.213 8 O -0.950 6.950 9 O -0.968 6.968 10 C -0.730 4.730 11 C -0.035 4.035 12 C -0.273 4.273 13 O -0.354 6.354 14 Si 0.727 3.273 15 C -0.148 4.148 16 C -0.073 4.073 17 C -0.149 4.149 18 C -0.053 4.053 19 C -0.129 4.129 20 C 0.032 3.968 21 O -0.315 6.315 22 C 0.383 3.617 23 F -0.158 7.158 24 F -0.163 7.163 25 F -0.158 7.158 26 C -0.200 4.200 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.283 0.717 31 H 0.109 0.891 32 H 0.214 0.786 33 H -0.167 1.167 34 H -0.223 1.223 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.262 0.738 42 H 0.146 0.854 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.387 -0.067 4.938 7.308 hybrid contribution 1.392 1.798 -0.605 2.353 sum -3.995 1.731 4.333 6.142 Atomic orbital electron populations 1.23508 0.74199 1.05008 1.03397 1.86637 1.25694 1.31739 1.82901 1.23571 0.91021 0.82478 0.72648 1.90728 1.66151 1.36570 1.44994 1.20518 0.84511 0.90371 0.96307 1.54927 1.56946 1.20525 1.50925 1.01785 0.73576 0.71976 0.73993 1.93555 1.82722 1.85470 1.33238 1.93602 1.53470 1.66576 1.83138 1.30217 1.22561 1.06351 1.13913 1.19731 0.95414 0.92674 0.95662 1.26734 0.99660 1.03520 0.97366 1.86767 1.24079 1.36982 1.87573 0.92307 0.72875 0.79300 0.82851 1.21392 0.96248 1.01019 0.96119 1.21844 0.98696 0.92504 0.94286 1.21658 0.94894 0.97875 1.00451 1.21051 0.96413 0.96887 0.90932 1.23543 0.94033 0.93814 1.01530 1.23131 0.88741 0.88011 0.96926 1.86585 1.26865 1.77933 1.40152 1.21160 0.74434 0.87408 0.78721 1.93232 1.88718 1.64797 1.69013 1.93204 1.64244 1.93902 1.64929 1.93210 1.47997 1.90763 1.83820 1.24372 0.98259 1.01861 0.95527 0.90235 0.91554 0.87056 0.71718 0.89087 0.78562 1.16690 1.22322 0.82279 0.81491 0.82413 0.83548 0.84118 0.84087 0.73802 0.85382 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.45 113.37 1.19 1.10 16 2 O -0.35 -0.18 3.79 -44.84 -0.17 -0.35 16 3 C 0.46 0.29 7.08 71.23 0.50 0.80 16 4 O -0.50 -2.01 15.69 21.94 0.34 -1.66 16 5 C 0.18 -0.46 1.02 3.38 0.00 -0.46 16 6 N -1.07 3.84 4.18 -153.10 -0.64 3.20 16 7 S 2.69 9.13 4.08 -56.49 -0.23 8.90 16 8 O -0.96 -7.21 12.55 -119.88 -1.50 -8.71 16 9 O -0.98 -8.30 15.87 -127.88 -2.03 -10.33 16 10 C -0.64 -0.64 3.52 22.27 0.08 -0.56 16 11 C -0.03 -0.06 5.22 -19.87 -0.10 -0.16 16 12 C -0.17 -0.99 2.10 71.24 0.15 -0.84 16 13 O -0.55 -5.30 12.68 -148.98 -1.89 -7.19 16 14 Si 0.83 0.81 30.18 68.60 2.07 2.88 16 15 C -0.13 0.53 8.66 22.27 0.19 0.72 16 16 C -0.06 0.44 10.05 22.27 0.22 0.67 16 17 C -0.13 0.96 10.05 22.26 0.22 1.19 16 18 C -0.03 0.14 8.02 22.27 0.18 0.32 16 19 C -0.09 0.53 6.39 31.12 0.20 0.73 16 20 C 0.08 -0.32 1.35 -10.27 -0.01 -0.34 16 21 O -0.51 3.02 12.88 -148.98 -1.92 1.11 16 22 C 0.44 -0.48 2.85 71.98 0.21 -0.27 16 23 F -0.18 -0.16 17.18 44.97 0.77 0.62 16 24 F -0.18 0.02 16.68 44.97 0.75 0.77 16 25 F -0.18 -0.17 15.75 44.97 0.71 0.54 16 26 C -0.16 0.35 6.25 31.12 0.19 0.55 16 27 H 0.08 -0.39 8.13 -2.38 -0.02 -0.41 16 28 H 0.07 -0.12 8.13 -2.39 -0.02 -0.14 16 29 H 0.11 -0.55 8.14 -2.38 -0.02 -0.57 16 30 H 0.44 -3.70 8.72 -96.74 -0.84 -4.54 16 31 H 0.09 0.76 5.49 -2.39 -0.01 0.75 16 32 H 0.36 3.45 6.07 -74.05 -0.45 3.00 16 33 H -0.24 -0.04 7.11 99.48 0.71 0.66 16 34 H -0.30 -2.48 7.11 99.48 0.71 -1.77 16 35 H 0.16 -1.43 5.16 -2.91 -0.02 -1.44 16 36 H 0.17 -2.34 8.06 -2.91 -0.02 -2.37 16 37 H 0.16 -1.94 8.06 -2.91 -0.02 -1.96 16 38 H 0.15 -1.30 7.34 -2.91 -0.02 -1.32 16 39 H 0.14 -1.48 8.10 -2.39 -0.02 -1.50 16 40 H 0.14 -0.78 7.09 -2.39 -0.02 -0.80 16 41 H 0.41 -4.44 8.46 -74.06 -0.63 -5.07 16 42 H 0.13 -0.30 7.09 -2.39 -0.02 -0.32 16 43 H 0.12 -0.20 7.44 -2.38 -0.02 -0.22 16 Total: 0.00 -23.53 370.22 -1.25 -24.78 By element: Atomic # 1 Polarization: -17.27 SS G_CDS: -0.73 Total: -18.00 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.22 Total: 3.45 kcal Atomic # 7 Polarization: 3.84 SS G_CDS: -0.64 Total: 3.20 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -7.17 Total: -27.14 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 2.23 Total: 1.93 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.07 Total: 2.88 kcal Atomic # 16 Polarization: 9.13 SS G_CDS: -0.23 Total: 8.90 kcal Total: -23.53 -1.25 -24.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.331 kcal (2) G-P(sol) polarization free energy of solvation -23.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -295.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds