Wall clock time and date at job start Mon Mar 8 2021 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 116.99732 * 2 1 4 4 O 1.20828 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00004 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.90294 * 48.75327 * 5 3 2 7 7 C 1.53776 * 113.61666 * 179.97438 * 5 3 2 8 8 C 1.53783 * 87.08167 * 139.98742 * 7 5 3 9 9 H 1.08996 * 113.61742 * 89.19755 * 8 7 5 10 10 S 1.81398 * 113.61555 * 220.02516 * 8 7 5 11 11 O 1.42101 * 110.54496 * 68.37231 * 10 8 7 12 12 O 1.42108 * 110.53975 * 291.62067 * 10 8 7 13 13 O 1.52198 * 104.45244 * 179.97438 * 10 8 7 14 14 C 1.35895 * 114.00194 * 74.99141 * 13 10 8 15 15 C 1.38623 * 120.02274 * 90.00632 * 14 13 10 16 16 C 1.38649 * 119.88868 * 180.02562 * 15 14 13 17 17 O 1.35898 * 120.02589 * 180.02562 * 16 15 14 18 18 C 1.42897 * 117.00036 * 359.97438 * 17 16 15 19 19 C 1.38755 * 119.94603 * 359.97438 * 16 15 14 20 20 C 1.50708 * 119.97211 * 179.72692 * 19 16 15 21 21 O 1.42897 * 109.47136 * 74.99505 * 20 19 16 22 22 Si 1.86297 * 109.47111 * 194.99997 * 20 19 16 23 23 C 1.38194 * 120.05434 * 359.97438 * 19 16 15 24 24 C 1.38153 * 120.11281 * 0.02562 * 23 19 16 25 25 C 1.53775 * 113.61772 * 277.50192 * 5 3 2 26 26 H 1.09003 * 109.46846 * 60.00337 * 1 2 3 27 27 H 1.09002 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47088 * 300.00148 * 1 2 3 29 29 H 1.09004 * 113.61426 * 25.43895 * 7 5 3 30 30 H 1.08997 * 113.69358 * 254.54567 * 7 5 3 31 31 H 1.07995 * 120.05538 * 0.02562 * 15 14 13 32 32 H 1.08997 * 109.47228 * 60.00215 * 18 17 16 33 33 H 1.08998 * 109.47402 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.47025 * 300.00092 * 18 17 16 35 35 H 1.09006 * 109.46885 * 314.99561 * 20 19 16 36 36 H 0.96696 * 114.00057 * 60.00573 * 21 20 19 37 37 H 1.48498 * 110.00160 * 179.97438 * 22 20 19 38 38 H 1.48507 * 109.99923 * 301.31775 * 22 20 19 39 39 H 1.08005 * 119.94467 * 180.02562 * 23 19 16 40 40 H 1.07996 * 119.97796 * 180.02562 * 24 23 19 41 41 H 1.09002 * 113.61558 * 105.47040 * 25 5 3 42 42 H 1.08996 * 113.61353 * 334.56872 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0250 0.6359 -0.7541 7 6 4.1077 2.7142 -0.0001 8 6 5.1807 2.2275 0.9881 9 1 6.0812 1.8498 0.5039 10 16 5.5381 3.4122 2.3145 11 8 4.4261 3.5296 3.1913 12 8 6.1844 4.5652 1.7924 13 8 6.6079 2.7300 3.1551 14 6 7.8418 2.7299 2.5856 15 6 8.7184 3.7756 2.8297 16 6 9.9764 3.7730 2.2469 17 8 10.8382 4.7965 2.4847 18 6 10.3818 5.8424 3.3447 19 6 10.3551 2.7239 1.4214 20 6 11.7201 2.7235 0.7826 21 8 12.7050 2.3921 1.7636 22 14 11.7628 1.4649 -0.5903 23 6 9.4797 1.6821 1.1805 24 6 8.2257 1.6823 1.7601 25 6 4.1906 1.1238 1.3978 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4171 3.4408 0.4281 30 1 4.5113 3.0299 -0.9622 31 1 8.4219 4.5910 3.4728 32 1 10.1412 5.4286 4.3240 33 1 11.1645 6.5935 3.4505 34 1 9.4916 6.3027 2.9162 35 1 11.9311 3.7124 0.3756 36 1 12.5795 1.5232 2.1690 37 1 13.1035 1.4550 -1.2287 38 1 11.4453 0.1170 -0.0537 39 1 9.7765 0.8662 0.5380 40 1 7.5435 0.8668 1.5706 41 1 4.6610 0.1545 1.5633 42 1 3.5227 1.4152 2.2083 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:45:18 Heat of formation + Delta-G solvation = -181.930588 kcal Electronic energy + Delta-G solvation = -30952.668136 eV Core-core repulsion = 26381.065279 eV Total energy + Delta-G solvation = -4571.602857 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.49493 -41.93004 -40.85985 -39.67782 -38.69398 -38.34680 -37.42933 -37.35350 -37.21566 -32.52127 -31.68056 -29.95528 -28.56418 -27.81899 -27.33227 -26.95934 -24.13101 -23.67006 -23.19901 -21.79226 -20.94575 -19.95020 -19.56029 -18.99174 -18.60880 -18.34975 -17.97509 -17.60333 -17.53894 -17.07569 -16.91015 -16.73176 -16.67427 -16.12307 -15.98026 -15.58410 -15.40495 -14.95902 -14.63262 -14.53153 -14.33435 -14.19737 -14.06391 -13.91773 -13.64622 -13.53258 -13.42863 -13.28177 -13.19866 -13.14262 -12.92102 -12.80452 -12.69818 -12.28877 -12.22096 -12.09219 -11.84127 -11.77858 -11.71080 -11.32378 -10.66141 -10.28875 -9.54966 -5.06952 -1.22143 -0.24058 -0.03017 0.84544 1.06498 1.16377 1.44390 1.60253 1.86647 2.05112 2.14574 2.36436 2.48832 2.73937 2.95308 3.03754 3.29096 3.34645 3.39369 3.48506 3.62972 3.68951 3.78270 3.84837 3.97910 4.07996 4.13010 4.13273 4.16692 4.19741 4.20889 4.23942 4.36102 4.43407 4.47492 4.51803 4.57016 4.64316 4.75484 4.77278 4.84162 4.92445 5.30012 5.30586 6.08731 6.37138 6.63681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.499 6.499 5 C -0.096 4.096 6 H 0.139 0.861 7 C -0.086 4.086 8 C -0.652 4.652 9 H 0.166 0.834 10 S 2.598 3.402 11 O -0.916 6.916 12 O -0.941 6.941 13 O -0.661 6.661 14 C 0.113 3.887 15 C -0.184 4.184 16 C 0.177 3.823 17 O -0.295 6.295 18 C 0.017 3.983 19 C -0.135 4.135 20 C -0.067 4.067 21 O -0.521 6.521 22 Si 0.690 3.310 23 C -0.066 4.066 24 C -0.166 4.166 25 C -0.093 4.093 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.374 0.626 37 H -0.254 1.254 38 H -0.256 1.256 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -4.314 -3.551 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.157 0.843 7 C -0.124 4.124 8 C -0.759 4.759 9 H 0.183 0.817 10 S 2.693 3.307 11 O -0.914 6.914 12 O -0.940 6.940 13 O -0.619 6.619 14 C 0.072 3.928 15 C -0.205 4.205 16 C 0.130 3.870 17 O -0.207 6.207 18 C -0.078 4.078 19 C -0.137 4.137 20 C -0.177 4.177 21 O -0.326 6.326 22 Si 0.591 3.409 23 C -0.084 4.084 24 C -0.186 4.186 25 C -0.131 4.131 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.221 0.779 37 H -0.178 1.178 38 H -0.182 1.182 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.125 0.875 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.329 -3.605 -3.474 5.180 hybrid contribution -0.394 -0.668 0.997 1.264 sum 0.935 -4.273 -2.477 5.027 Atomic orbital electron populations 1.23363 0.75662 1.04135 1.02905 1.86503 1.23942 1.33006 1.83746 1.23461 0.91521 0.81669 0.72477 1.90714 1.66843 1.36394 1.44585 1.22427 0.87907 1.00148 1.01059 0.84328 1.22619 0.93919 0.95906 0.99997 1.32288 1.08299 1.16426 1.18857 0.81670 1.05507 0.74394 0.75347 0.75486 1.93678 1.51388 1.85013 1.61298 1.93670 1.72364 1.46825 1.81121 1.85737 1.28195 1.85452 1.62560 1.17730 0.81790 0.96599 0.96717 1.21387 0.93883 1.00512 1.04730 1.18507 0.87505 0.88230 0.92779 1.86208 1.39648 1.30306 1.64490 1.23286 1.02377 0.88959 0.93170 1.19898 0.98509 0.94324 1.00978 1.24965 0.84793 1.10260 0.97662 1.86682 1.50455 1.39632 1.55864 0.95075 0.86177 0.77428 0.82227 1.20883 0.92075 0.97391 0.98069 1.21173 0.98867 0.98611 0.99949 1.22673 0.95519 0.98484 0.96396 0.91620 0.87728 0.91560 0.87347 0.87451 0.83359 0.92202 0.87324 0.91671 0.85940 0.77923 1.17828 1.18170 0.83125 0.83449 0.87533 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.20 10.57 -39.25 -0.41 -0.61 16 3 C 0.47 0.52 7.48 36.01 0.27 0.79 16 4 O -0.50 -2.14 15.65 -18.75 -0.29 -2.43 16 5 C -0.10 0.22 4.26 -90.96 -0.39 -0.17 16 6 H 0.14 -0.71 8.14 -51.93 -0.42 -1.14 16 7 C -0.09 0.16 6.99 -25.92 -0.18 -0.02 16 8 C -0.65 1.74 4.03 -25.90 -0.10 1.63 16 9 H 0.17 -0.98 6.11 -51.93 -0.32 -1.29 16 10 S 2.60 3.84 5.14 -107.50 -0.55 3.29 16 11 O -0.92 -4.48 17.27 -67.04 -1.16 -5.64 16 12 O -0.94 -3.26 16.26 -67.03 -1.09 -4.35 16 13 O -0.66 -0.82 10.05 -51.74 -0.52 -1.34 16 14 C 0.11 0.07 4.80 -39.23 -0.19 -0.12 16 15 C -0.18 -0.25 8.03 -39.29 -0.32 -0.56 16 16 C 0.18 0.19 6.66 -39.24 -0.26 -0.07 16 17 O -0.29 -0.42 9.82 -19.42 -0.19 -0.61 16 18 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 19 C -0.14 0.08 5.28 -104.44 -0.55 -0.47 16 20 C -0.07 0.06 2.37 36.01 0.09 0.14 16 21 O -0.52 -0.42 12.88 -35.23 -0.45 -0.87 16 22 Si 0.69 -1.78 30.24 -169.99 -5.14 -6.92 16 23 C -0.07 0.17 8.65 -39.63 -0.34 -0.18 16 24 C -0.17 0.37 8.50 -39.41 -0.33 0.03 16 25 C -0.09 0.25 7.19 -25.90 -0.19 0.07 16 26 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 27 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 28 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.11 -0.03 7.39 -51.93 -0.38 -0.42 16 30 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 31 H 0.15 0.10 6.30 -52.49 -0.33 -0.24 16 32 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 33 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 34 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 35 H 0.12 -0.08 7.83 -51.93 -0.41 -0.49 16 36 H 0.37 -0.92 8.70 45.56 0.40 -0.52 16 37 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 38 H -0.26 0.44 6.69 56.52 0.38 0.82 16 39 H 0.15 -0.74 4.85 -52.48 -0.25 -0.99 16 40 H 0.15 -0.82 7.25 -52.49 -0.38 -1.20 16 41 H 0.11 -0.57 8.14 -51.93 -0.42 -1.00 16 42 H 0.11 -0.15 7.38 -51.93 -0.38 -0.53 16 LS Contribution 364.38 15.07 5.49 5.49 Total: 0.00 -12.31 364.38 -9.80 -22.11 By element: Atomic # 1 Polarization: -6.17 SS G_CDS: -5.04 Total: -11.20 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.44 Total: 3.09 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -4.12 Total: -15.86 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -5.14 Total: -6.92 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -0.55 Total: 3.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -12.31 -9.80 -22.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.820 kcal (2) G-P(sol) polarization free energy of solvation -12.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds