Wall clock time and date at job start Mon Mar 8 2021 13:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00362 * 2 1 4 4 C 1.38620 * 120.02383 * 359.97250 * 3 2 1 5 5 C 1.38653 * 119.88716 * 180.02562 * 4 3 2 6 6 O 1.35898 * 120.02526 * 180.02562 * 5 4 3 7 7 S 1.52201 * 114.00035 * 89.99942 * 6 5 4 8 8 O 1.42104 * 104.27535 * 191.07299 * 7 6 5 9 9 O 1.42098 * 104.27612 * 318.92925 * 7 6 5 10 10 C 1.81394 * 104.44753 * 75.00112 * 7 6 5 11 11 C 1.53008 * 109.46941 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.46838 * 179.97438 * 11 10 7 13 13 Si 1.86303 * 109.46842 * 179.97438 * 12 11 10 14 14 C 1.86307 * 109.47121 * 60.00193 * 13 12 11 15 15 C 1.86297 * 109.47175 * 179.97438 * 13 12 11 16 16 C 1.86298 * 109.47164 * 300.00123 * 13 12 11 17 17 C 1.38748 * 119.94630 * 0.02562 * 5 4 3 18 18 C 1.38200 * 120.05718 * 359.74072 * 17 5 4 19 19 C 1.38156 * 120.10581 * 0.51689 * 18 17 5 20 20 C 1.50697 * 119.97228 * 179.76717 * 19 18 17 21 21 O 1.42906 * 109.46831 * 254.72329 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 14.71718 * 20 19 18 23 23 H 1.48503 * 109.46942 * 60.00611 * 22 20 19 24 24 H 1.48503 * 109.47276 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47372 * 300.00074 * 22 20 19 26 26 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47093 * 300.00365 * 1 2 3 28 28 H 1.08996 * 109.46962 * 60.00452 * 1 2 3 29 29 H 1.07995 * 120.05190 * 0.02562 * 4 3 2 30 30 H 1.08998 * 109.47366 * 300.00046 * 10 7 6 31 31 H 1.09001 * 109.47505 * 60.00356 * 10 7 6 32 32 H 1.09000 * 109.46570 * 299.99802 * 11 10 7 33 33 H 1.08992 * 109.46822 * 59.99720 * 11 10 7 34 34 H 1.08998 * 109.47424 * 300.00086 * 12 11 10 35 35 H 1.09001 * 109.47549 * 60.00459 * 12 11 10 36 36 H 1.08998 * 109.46957 * 59.99905 * 14 13 12 37 37 H 1.08993 * 109.47047 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46604 * 299.99774 * 14 13 12 39 39 H 1.09005 * 109.47039 * 60.00103 * 15 13 12 40 40 H 1.09005 * 109.47419 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47447 * 300.00428 * 15 13 12 42 42 H 1.09001 * 109.47062 * 59.99977 * 16 13 12 43 43 H 1.09005 * 109.46756 * 179.97438 * 16 13 12 44 44 H 1.09001 * 109.47263 * 299.99439 * 16 13 12 45 45 H 1.08006 * 119.97289 * 180.02562 * 17 5 4 46 46 H 1.07998 * 119.94441 * 180.25633 * 18 17 5 47 47 H 1.09000 * 109.47374 * 134.71902 * 20 19 18 48 48 H 0.96693 * 114.00047 * 60.00191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3738 -0.0006 5 6 1.9241 3.6076 -0.0011 6 8 1.1872 4.7495 -0.0012 7 16 0.8520 5.2700 1.3893 8 8 -0.1170 6.2837 1.1597 9 8 0.5290 4.1025 2.1320 10 6 2.4033 5.9959 1.9869 11 6 2.1933 6.5612 3.3931 12 6 3.5019 7.1729 3.8974 13 14 3.2460 7.8620 5.6093 14 6 2.7174 6.4931 6.7572 15 6 4.8395 8.6061 6.2238 16 6 1.9254 9.1751 5.5592 17 6 3.3099 3.6755 -0.0016 18 6 4.0598 2.5147 0.0038 19 6 3.4320 1.2841 -0.0010 20 6 4.2527 0.0202 -0.0003 21 8 4.2193 -0.5700 -1.3014 22 14 6.0139 0.4237 0.4535 23 1 6.0486 1.0371 1.8055 24 1 6.8229 -0.8216 0.4535 25 1 6.5744 1.3773 -0.5373 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2130 2.3187 -0.0006 30 1 3.1765 5.2281 2.0153 31 1 2.7117 6.7975 1.3158 32 1 1.4202 7.3291 3.3642 33 1 1.8846 5.7600 4.0644 34 1 4.2746 6.4047 3.9263 35 1 3.8109 7.9741 3.2261 36 1 3.4900 5.7248 6.7865 37 1 2.5673 6.8963 7.7586 38 1 1.7851 6.0574 6.3978 39 1 5.1493 9.4070 5.5523 40 1 4.6898 9.0097 7.2252 41 1 5.6119 7.8376 6.2531 42 1 0.9932 8.7393 5.1998 43 1 1.7754 9.5779 6.5609 44 1 2.2347 9.9761 4.8877 45 1 3.8030 4.6365 -0.0016 46 1 5.1384 2.5697 0.0076 47 1 3.8414 -0.6798 0.7269 48 1 4.5711 -0.0018 -2.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:04:20 Heat of formation + Delta-G solvation = -193.720492 kcal Electronic energy + Delta-G solvation = -29327.627216 eV Core-core repulsion = 25213.585435 eV Total energy + Delta-G solvation = -4114.041782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46208 -40.82635 -38.65011 -38.28946 -37.32562 -37.15845 -36.03125 -32.49104 -31.64086 -29.78432 -28.66388 -28.50361 -28.47453 -28.32321 -26.96091 -24.02338 -23.67829 -22.81629 -21.68960 -19.89123 -19.02191 -18.88000 -18.36130 -17.72845 -17.29575 -17.09123 -16.83338 -16.61715 -16.05676 -15.90867 -15.53077 -15.39580 -15.10514 -14.91633 -14.42647 -14.32500 -14.21628 -14.18488 -14.13785 -13.80822 -13.72406 -13.66103 -13.40765 -13.31956 -13.27616 -13.20547 -13.15482 -13.15153 -13.13982 -12.88312 -12.71201 -12.31855 -12.22206 -12.16850 -12.04424 -11.91271 -11.75922 -10.90016 -10.86579 -10.63787 -10.47816 -10.25198 -9.52068 -1.15324 -0.20406 -0.01107 0.94127 1.04101 1.30064 1.42313 1.65866 1.77988 1.79472 1.82652 2.07330 2.17109 2.47655 2.56602 2.84011 3.29796 3.36853 3.42754 3.51812 3.55367 3.66989 3.74450 3.87013 3.94511 4.09678 4.14101 4.17982 4.19730 4.44502 4.46110 4.53839 4.58174 4.65207 4.66331 4.67181 4.69871 4.70732 4.71699 4.73055 4.79773 4.83411 4.87099 4.94527 5.18285 5.32101 5.40935 5.49093 5.51059 6.11383 6.52554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.293 6.293 3 C 0.178 3.822 4 C -0.184 4.184 5 C 0.113 3.887 6 O -0.664 6.664 7 S 2.584 3.416 8 O -0.923 6.923 9 O -0.947 6.947 10 C -0.647 4.647 11 C -0.102 4.102 12 C -0.406 4.406 13 Si 1.002 2.998 14 C -0.453 4.453 15 C -0.449 4.449 16 C -0.454 4.454 17 C -0.165 4.165 18 C -0.072 4.072 19 C -0.138 4.138 20 C -0.072 4.072 21 O -0.530 6.530 22 Si 0.945 3.055 23 H -0.246 1.246 24 H -0.248 1.248 25 H -0.249 1.249 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.122 0.878 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 0.191 0.757 4.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.205 6.205 3 C 0.131 3.869 4 C -0.204 4.204 5 C 0.072 3.928 6 O -0.623 6.623 7 S 2.681 3.319 8 O -0.921 6.921 9 O -0.945 6.945 10 C -0.774 4.774 11 C -0.140 4.140 12 C -0.491 4.491 13 Si 1.199 2.801 14 C -0.561 4.561 15 C -0.557 4.557 16 C -0.561 4.561 17 C -0.186 4.186 18 C -0.090 4.090 19 C -0.140 4.140 20 C -0.183 4.183 21 O -0.335 6.335 22 Si 0.767 3.233 23 H -0.169 1.169 24 H -0.172 1.172 25 H -0.173 1.173 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.140 0.860 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.090 -0.418 1.081 4.251 hybrid contribution -0.091 1.054 -0.402 1.132 sum 3.999 0.636 0.679 4.106 Atomic orbital electron populations 1.23284 0.77461 1.05006 1.02030 1.86209 1.21972 1.25058 1.87287 1.18474 0.91178 0.84166 0.93060 1.21388 1.01894 0.90686 1.06467 1.17709 0.88917 0.81565 1.04636 1.85740 1.73351 1.45386 1.57794 1.05829 0.77421 0.75417 0.73269 1.93666 1.55900 1.60146 1.82363 1.93663 1.82780 1.46310 1.71762 1.30927 1.23307 1.13961 1.09253 1.20982 1.00181 1.01350 0.91500 1.26163 0.98840 1.06084 1.18056 0.79326 0.67373 0.67230 0.66188 1.26173 1.05868 1.13238 1.10780 1.26104 1.16235 1.07013 1.06312 1.26179 1.12671 1.12613 1.04646 1.21172 0.91127 1.00569 1.05688 1.20844 1.00386 0.90388 0.97370 1.19927 0.91651 0.96445 1.06001 1.24911 1.08895 0.94627 0.89838 1.86594 1.86855 1.44133 1.15870 0.85797 0.75101 0.81067 0.81339 1.16890 1.17160 1.17334 0.87310 0.91767 0.92164 0.83293 0.84408 0.84114 0.89900 0.89878 0.89996 0.89977 0.91156 0.91101 0.91124 0.91256 0.91137 0.91256 0.91109 0.91097 0.91141 0.83532 0.83595 0.85977 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.29 -0.45 9.82 -19.42 -0.19 -0.64 16 3 C 0.18 0.27 6.66 -39.24 -0.26 0.00 16 4 C -0.18 -0.33 8.03 -39.29 -0.32 -0.64 16 5 C 0.11 0.16 4.80 -39.24 -0.19 -0.03 16 6 O -0.66 -1.22 10.05 -51.74 -0.52 -1.74 16 7 S 2.58 4.57 5.17 -107.50 -0.56 4.02 16 8 O -0.92 -4.77 18.09 -67.04 -1.21 -5.98 16 9 O -0.95 -3.49 16.26 -67.04 -1.09 -4.58 16 10 C -0.65 1.32 5.46 37.16 0.20 1.52 16 11 C -0.10 0.18 4.59 -26.73 -0.12 0.06 16 12 C -0.41 1.19 4.45 37.16 0.17 1.36 16 13 Si 1.00 -3.20 12.19 -169.99 -2.07 -5.28 16 14 C -0.45 0.82 8.65 101.05 0.87 1.69 16 15 C -0.45 0.93 8.65 101.05 0.87 1.80 16 16 C -0.45 0.78 8.65 101.05 0.87 1.65 16 17 C -0.17 0.18 8.46 -39.41 -0.33 -0.15 16 18 C -0.07 0.11 8.65 -39.63 -0.34 -0.24 16 19 C -0.14 -0.01 5.28 -104.45 -0.55 -0.56 16 20 C -0.07 0.05 2.38 36.00 0.09 0.14 16 21 O -0.53 -0.05 12.88 -35.23 -0.45 -0.51 16 22 Si 0.95 -1.77 25.48 -169.99 -4.33 -6.10 16 23 H -0.25 0.38 7.11 56.52 0.40 0.78 16 24 H -0.25 0.05 7.11 56.52 0.40 0.45 16 25 H -0.25 0.65 6.74 56.52 0.38 1.03 16 26 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 27 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 28 H 0.06 -0.12 7.66 -51.93 -0.40 -0.51 16 29 H 0.15 0.14 6.30 -52.49 -0.33 -0.19 16 30 H 0.14 -0.54 6.60 -51.93 -0.34 -0.88 16 31 H 0.14 -0.57 8.14 -51.92 -0.42 -0.99 16 32 H 0.08 -0.19 7.79 -51.93 -0.40 -0.60 16 33 H 0.08 -0.21 7.79 -51.93 -0.40 -0.61 16 34 H 0.08 -0.29 7.96 -51.93 -0.41 -0.71 16 35 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 42 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 45 H 0.15 -0.62 7.49 -52.48 -0.39 -1.01 16 46 H 0.15 -0.56 4.88 -52.49 -0.26 -0.81 16 47 H 0.12 -0.08 7.83 -51.93 -0.41 -0.49 16 48 H 0.37 -1.31 8.70 45.56 0.40 -0.91 16 LS Contribution 401.63 15.07 6.05 6.05 Total: 0.00 -9.81 401.63 -9.55 -19.36 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -7.13 Total: -12.18 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 1.95 Total: 7.57 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -3.47 Total: -13.45 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: -6.40 Total: -11.38 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -0.56 Total: 4.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -9.81 -9.55 -19.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.365 kcal (2) G-P(sol) polarization free energy of solvation -9.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds