Wall clock time and date at job start Mon Mar 8 2021 13:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00362 * 2 1 4 4 C 1.38620 * 120.02383 * 359.97250 * 3 2 1 5 5 C 1.38653 * 119.88716 * 180.02562 * 4 3 2 6 6 O 1.35898 * 120.02526 * 180.02562 * 5 4 3 7 7 S 1.52201 * 114.00035 * 89.99942 * 6 5 4 8 8 O 1.42104 * 104.27535 * 191.07299 * 7 6 5 9 9 O 1.42098 * 104.27612 * 318.92925 * 7 6 5 10 10 C 1.81394 * 104.44753 * 75.00112 * 7 6 5 11 11 C 1.53008 * 109.46941 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.46838 * 179.97438 * 11 10 7 13 13 Si 1.86303 * 109.46842 * 179.97438 * 12 11 10 14 14 C 1.86307 * 109.47121 * 60.00193 * 13 12 11 15 15 C 1.86297 * 109.47175 * 179.97438 * 13 12 11 16 16 C 1.86298 * 109.47164 * 300.00123 * 13 12 11 17 17 C 1.38748 * 119.94630 * 0.02562 * 5 4 3 18 18 C 1.38200 * 120.05718 * 359.74072 * 17 5 4 19 19 C 1.38156 * 120.10581 * 0.51689 * 18 17 5 20 20 C 1.50697 * 119.97228 * 179.76717 * 19 18 17 21 21 O 1.42906 * 109.46831 * 254.72329 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 14.71718 * 20 19 18 23 23 H 1.48503 * 109.46942 * 60.00611 * 22 20 19 24 24 H 1.48503 * 109.47276 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47372 * 300.00074 * 22 20 19 26 26 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47093 * 300.00365 * 1 2 3 28 28 H 1.08996 * 109.46962 * 60.00452 * 1 2 3 29 29 H 1.07995 * 120.05190 * 0.02562 * 4 3 2 30 30 H 1.08998 * 109.47366 * 300.00046 * 10 7 6 31 31 H 1.09001 * 109.47505 * 60.00356 * 10 7 6 32 32 H 1.09000 * 109.46570 * 299.99802 * 11 10 7 33 33 H 1.08992 * 109.46822 * 59.99720 * 11 10 7 34 34 H 1.08998 * 109.47424 * 300.00086 * 12 11 10 35 35 H 1.09001 * 109.47549 * 60.00459 * 12 11 10 36 36 H 1.08998 * 109.46957 * 59.99905 * 14 13 12 37 37 H 1.08993 * 109.47047 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46604 * 299.99774 * 14 13 12 39 39 H 1.09005 * 109.47039 * 60.00103 * 15 13 12 40 40 H 1.09005 * 109.47419 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47447 * 300.00428 * 15 13 12 42 42 H 1.09001 * 109.47062 * 59.99977 * 16 13 12 43 43 H 1.09005 * 109.46756 * 179.97438 * 16 13 12 44 44 H 1.09001 * 109.47263 * 299.99439 * 16 13 12 45 45 H 1.08006 * 119.97289 * 180.02562 * 17 5 4 46 46 H 1.07998 * 119.94441 * 180.25633 * 18 17 5 47 47 H 1.09000 * 109.47374 * 134.71902 * 20 19 18 48 48 H 0.96693 * 114.00047 * 60.00191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3738 -0.0006 5 6 1.9241 3.6076 -0.0011 6 8 1.1872 4.7495 -0.0012 7 16 0.8520 5.2700 1.3893 8 8 -0.1170 6.2837 1.1597 9 8 0.5290 4.1025 2.1320 10 6 2.4033 5.9959 1.9869 11 6 2.1933 6.5612 3.3931 12 6 3.5019 7.1729 3.8974 13 14 3.2460 7.8620 5.6093 14 6 2.7174 6.4931 6.7572 15 6 4.8395 8.6061 6.2238 16 6 1.9254 9.1751 5.5592 17 6 3.3099 3.6755 -0.0016 18 6 4.0598 2.5147 0.0038 19 6 3.4320 1.2841 -0.0010 20 6 4.2527 0.0202 -0.0003 21 8 4.2193 -0.5700 -1.3014 22 14 6.0139 0.4237 0.4535 23 1 6.0486 1.0371 1.8055 24 1 6.8229 -0.8216 0.4535 25 1 6.5744 1.3773 -0.5373 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2130 2.3187 -0.0006 30 1 3.1765 5.2281 2.0153 31 1 2.7117 6.7975 1.3158 32 1 1.4202 7.3291 3.3642 33 1 1.8846 5.7600 4.0644 34 1 4.2746 6.4047 3.9263 35 1 3.8109 7.9741 3.2261 36 1 3.4900 5.7248 6.7865 37 1 2.5673 6.8963 7.7586 38 1 1.7851 6.0574 6.3978 39 1 5.1493 9.4070 5.5523 40 1 4.6898 9.0097 7.2252 41 1 5.6119 7.8376 6.2531 42 1 0.9932 8.7393 5.1998 43 1 1.7754 9.5779 6.5609 44 1 2.2347 9.9761 4.8877 45 1 3.8030 4.6365 -0.0016 46 1 5.1384 2.5697 0.0076 47 1 3.8414 -0.6798 0.7269 48 1 4.5711 -0.0018 -2.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:04:19 Heat of formation + Delta-G solvation = -192.920251 kcal Electronic energy + Delta-G solvation = -29327.592515 eV Core-core repulsion = 25213.585435 eV Total energy + Delta-G solvation = -4114.007081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.46265 -40.83130 -38.61304 -38.46474 -37.39286 -37.21569 -35.84151 -32.45684 -31.58168 -29.60217 -28.55239 -28.32911 -28.30231 -28.16361 -26.91493 -23.93736 -23.65271 -22.64525 -21.67467 -19.93122 -19.08521 -18.87527 -18.36441 -17.73181 -17.26777 -17.04639 -16.78093 -16.50869 -15.96118 -15.85246 -15.54573 -15.32027 -14.99724 -14.75404 -14.36588 -14.24613 -14.14300 -14.00831 -13.96332 -13.72269 -13.57132 -13.53734 -13.45213 -13.38667 -13.30977 -13.14747 -13.04232 -13.00001 -12.97179 -12.81832 -12.63744 -12.24255 -12.12515 -12.03000 -11.81563 -11.78264 -11.61398 -10.70234 -10.67571 -10.43514 -10.37525 -10.21235 -9.49604 -1.18749 -0.19397 0.04432 0.90354 1.18933 1.49152 1.60108 1.93099 1.99483 2.01573 2.02941 2.13471 2.21270 2.46954 2.74654 2.80627 3.38466 3.46939 3.56918 3.68124 3.71176 3.78217 3.84258 3.93094 4.18814 4.21316 4.24906 4.26582 4.42712 4.54593 4.63647 4.65331 4.76182 4.80608 4.81747 4.83527 4.84656 4.87167 4.88214 4.88672 4.89445 4.92123 5.02063 5.12084 5.40495 5.47634 5.61087 5.67186 5.67812 6.12828 6.77763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.311 6.311 3 C 0.159 3.841 4 C -0.205 4.205 5 C 0.091 3.909 6 O -0.670 6.670 7 S 2.575 3.425 8 O -0.970 6.970 9 O -0.978 6.978 10 C -0.622 4.622 11 C -0.122 4.122 12 C -0.407 4.407 13 Si 1.068 2.932 14 C -0.474 4.474 15 C -0.462 4.462 16 C -0.476 4.476 17 C -0.156 4.156 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.083 4.083 21 O -0.550 6.550 22 Si 0.984 3.016 23 H -0.245 1.245 24 H -0.278 1.278 25 H -0.226 1.226 26 H 0.124 0.876 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.186 0.814 46 H 0.178 0.822 47 H 0.111 0.889 48 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 1.145 0.406 7.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.224 6.224 3 C 0.112 3.888 4 C -0.226 4.226 5 C 0.049 3.951 6 O -0.629 6.629 7 S 2.677 3.323 8 O -0.968 6.968 9 O -0.976 6.976 10 C -0.754 4.754 11 C -0.161 4.161 12 C -0.494 4.494 13 Si 1.260 2.740 14 C -0.580 4.580 15 C -0.569 4.569 16 C -0.581 4.581 17 C -0.176 4.176 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.191 4.191 21 O -0.357 6.357 22 Si 0.805 3.195 23 H -0.168 1.168 24 H -0.203 1.203 25 H -0.148 1.148 26 H 0.142 0.858 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.203 0.797 46 H 0.194 0.806 47 H 0.129 0.871 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.838 0.542 0.716 6.897 hybrid contribution -0.961 0.723 -0.255 1.229 sum 5.877 1.265 0.461 6.030 Atomic orbital electron populations 1.23426 0.76658 1.06020 1.02139 1.86172 1.22992 1.25581 1.87605 1.18726 0.92022 0.83928 0.94130 1.21499 1.01929 0.91562 1.07610 1.18037 0.90083 0.81057 1.05877 1.85697 1.73932 1.45609 1.57660 1.05944 0.78839 0.74627 0.72922 1.93600 1.59170 1.60972 1.83098 1.93616 1.84236 1.47558 1.72237 1.30777 1.19958 1.15239 1.09398 1.21229 1.01234 1.01886 0.91703 1.26186 0.98401 1.06909 1.17874 0.78312 0.65247 0.64975 0.65440 1.26438 1.05904 1.14385 1.11234 1.26268 1.17193 1.07323 1.06125 1.26463 1.13615 1.13730 1.04313 1.21619 0.89874 1.02441 1.03639 1.21211 1.01786 0.89427 0.96009 1.20211 0.91125 0.97583 1.05489 1.25165 1.10428 0.94151 0.89371 1.86552 1.87280 1.45179 1.16721 0.85263 0.72519 0.80058 0.81676 1.16816 1.20291 1.14840 0.85806 0.92007 0.91787 0.84058 0.81635 0.81193 0.89832 0.89599 0.88418 0.88603 0.90896 0.91699 0.91543 0.91050 0.91791 0.90943 0.91559 0.91685 0.91000 0.79722 0.80555 0.87083 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -1.59 9.82 -92.41 -0.91 -2.50 16 3 C 0.16 0.68 6.66 22.49 0.15 0.83 16 4 C -0.21 -1.07 8.03 22.46 0.18 -0.89 16 5 C 0.09 0.25 4.80 22.49 0.11 0.36 16 6 O -0.67 -2.86 10.05 -61.49 -0.62 -3.48 16 7 S 2.57 10.97 5.17 -56.49 -0.29 10.68 16 8 O -0.97 -11.81 18.09 -118.57 -2.15 -13.96 16 9 O -0.98 -8.96 16.26 -118.57 -1.93 -10.88 16 10 C -0.62 3.97 5.46 71.98 0.39 4.36 16 11 C -0.12 0.63 4.59 30.60 0.14 0.77 16 12 C -0.41 3.54 4.45 71.98 0.32 3.86 16 13 Si 1.07 -7.96 12.19 68.60 0.84 -7.12 16 14 C -0.47 1.75 8.65 113.37 0.98 2.73 16 15 C -0.46 2.45 8.65 113.37 0.98 3.43 16 16 C -0.48 1.59 8.65 113.37 0.98 2.57 16 17 C -0.16 0.71 8.46 22.38 0.19 0.90 16 18 C -0.07 0.35 8.65 22.24 0.19 0.54 16 19 C -0.14 0.03 5.28 -19.75 -0.10 -0.08 16 20 C -0.08 0.12 2.38 71.23 0.17 0.29 16 21 O -0.55 -0.26 12.88 -148.98 -1.92 -2.18 16 22 Si 0.98 -5.33 25.48 68.60 1.75 -3.58 16 23 H -0.24 1.34 7.11 99.48 0.71 2.05 16 24 H -0.28 0.14 7.11 99.48 0.71 0.85 16 25 H -0.23 2.06 6.74 99.48 0.67 2.73 16 26 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.06 0.00 7.66 -2.39 -0.02 -0.02 16 28 H 0.06 -0.09 7.66 -2.39 -0.02 -0.11 16 29 H 0.14 0.72 6.30 -2.91 -0.02 0.70 16 30 H 0.17 -1.94 6.60 -2.39 -0.02 -1.96 16 31 H 0.17 -2.00 8.14 -2.39 -0.02 -2.02 16 32 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 33 H 0.09 -0.49 7.79 -2.39 -0.02 -0.51 16 34 H 0.10 -1.09 7.96 -2.39 -0.02 -1.11 16 35 H 0.10 -1.03 7.96 -2.39 -0.02 -1.04 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 38 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 39 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 40 H 0.06 -0.24 7.96 -2.38 -0.02 -0.26 16 41 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 43 H 0.06 -0.15 7.96 -2.38 -0.02 -0.17 16 44 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 45 H 0.19 -2.39 7.49 -2.91 -0.02 -2.41 16 46 H 0.18 -2.07 4.88 -2.91 -0.01 -2.08 16 47 H 0.11 0.00 7.83 -2.39 -0.02 -0.02 16 48 H 0.39 -2.85 8.70 -74.06 -0.64 -3.50 16 Total: 0.00 -25.74 401.63 1.60 -24.14 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 1.03 Total: -11.90 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 5.79 Total: 20.78 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -7.52 Total: -32.99 kcal Atomic # 14 Polarization: -13.29 SS G_CDS: 2.58 Total: -10.70 kcal Atomic # 16 Polarization: 10.97 SS G_CDS: -0.29 Total: 10.68 kcal Total: -25.74 1.60 -24.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.780 kcal (2) G-P(sol) polarization free energy of solvation -25.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds