Wall clock time and date at job start Mon Mar 8 2021 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08994 * 112.85133 * 48.80712 * 6 4 3 8 8 C 1.53783 * 113.61301 * 180.02562 * 6 4 3 9 9 C 1.53779 * 87.08121 * 139.98008 * 8 6 4 10 10 F 1.39898 * 113.61550 * 220.01785 * 9 8 6 11 11 C 1.53002 * 113.61248 * 89.20075 * 9 8 6 12 12 S 1.81403 * 109.47031 * 185.00063 * 11 9 8 13 13 O 1.42097 * 110.54292 * 291.62517 * 12 11 9 14 14 O 1.42103 * 110.54078 * 68.37390 * 12 11 9 15 15 O 1.52197 * 104.44878 * 179.97438 * 12 11 9 16 16 C 1.35905 * 113.99541 * 75.00215 * 15 12 11 17 17 C 1.38610 * 120.02622 * 90.00247 * 16 15 12 18 18 C 1.38659 * 119.88964 * 179.97438 * 17 16 15 19 19 O 1.35896 * 120.02853 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99991 * 0.02562 * 19 18 17 21 21 C 1.38750 * 119.94394 * 359.97438 * 18 17 16 22 22 C 1.50703 * 119.97459 * 179.97438 * 21 18 17 23 23 O 1.42895 * 109.46683 * 74.99898 * 22 21 18 24 24 Si 1.86296 * 109.47462 * 195.00211 * 22 21 18 25 25 C 1.38193 * 120.05369 * 359.97438 * 21 18 17 26 26 C 1.38151 * 120.11217 * 359.76130 * 25 21 18 27 27 C 1.53778 * 87.08233 * 334.56910 * 9 8 6 28 28 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 33 33 H 1.09003 * 113.61455 * 254.53311 * 8 6 4 34 34 H 1.09000 * 113.61631 * 25.43210 * 8 6 4 35 35 H 1.09004 * 109.46993 * 304.99974 * 11 9 8 36 36 H 1.08998 * 109.47289 * 65.00268 * 11 9 8 37 37 H 1.08002 * 120.05536 * 359.97112 * 17 16 15 38 38 H 1.08996 * 109.47016 * 59.99738 * 20 19 18 39 39 H 1.08994 * 109.47169 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46987 * 299.99715 * 20 19 18 41 41 H 1.08998 * 109.46763 * 315.00426 * 22 21 18 42 42 H 0.96700 * 113.99964 * 180.02562 * 23 22 21 43 43 H 1.48494 * 110.00111 * 178.68417 * 24 22 21 44 44 H 1.48504 * 109.99982 * 300.00116 * 24 22 21 45 45 H 1.08006 * 119.94730 * 180.02562 * 25 21 18 46 46 H 1.08001 * 119.97391 * 180.25506 * 26 25 21 47 47 H 1.09003 * 113.60935 * 270.88545 * 27 9 8 48 48 H 1.08992 * 113.62150 * 139.98188 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.4709 3.5812 0.7570 8 6 5.4582 2.9682 0.0011 9 6 5.3564 4.1430 -0.9860 10 9 6.3093 4.0993 -2.0093 11 6 5.2784 5.5108 -0.3047 12 16 5.0137 6.7959 -1.5574 13 8 6.1659 6.9384 -2.3767 14 8 3.7184 6.6755 -2.1293 15 8 4.9540 8.0932 -0.7637 16 6 6.1639 8.5276 -0.3228 17 6 6.9257 9.3759 -1.1111 18 6 8.1595 9.8177 -0.6582 19 8 8.9089 10.6491 -1.4290 20 6 8.3637 11.0279 -2.6944 21 6 8.6283 9.4104 0.5825 22 6 9.9694 9.8898 1.0751 23 8 9.8647 11.2531 1.4905 24 14 10.5128 8.8415 2.5161 25 6 7.8664 8.5655 1.3670 26 6 6.6344 8.1282 0.9203 27 6 3.9862 3.5777 -1.3955 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 5.8895 3.2427 0.9638 34 1 5.9127 2.0753 -0.4282 35 1 4.4496 5.5173 0.4033 36 1 6.2105 5.7065 0.2252 37 1 6.5589 9.6921 -2.0765 38 1 7.4163 11.5447 -2.5418 39 1 9.0611 11.6906 -3.2068 40 1 8.1981 10.1369 -3.3001 41 1 10.7014 9.8101 0.2714 42 1 10.6927 11.6286 1.8200 43 1 11.8484 9.2838 2.9909 44 1 9.5230 8.9416 3.6188 45 1 8.2328 8.2499 2.3327 46 1 6.0390 7.4712 1.5370 47 1 4.0383 2.8514 -2.2067 48 1 3.2291 4.3442 -1.5604 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:41 Heat of formation + Delta-G solvation = -232.037484 kcal Electronic energy + Delta-G solvation = -37683.123978 eV Core-core repulsion = 32328.819109 eV Total energy + Delta-G solvation = -5354.304869 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.02271 -42.50065 -41.88663 -40.84372 -39.65776 -38.60418 -38.38562 -37.52324 -37.46390 -37.24672 -32.84229 -32.63151 -31.98592 -31.36036 -28.54601 -27.45054 -27.18320 -26.98142 -24.17929 -23.83305 -23.55032 -22.36163 -21.82500 -20.59395 -19.99365 -19.37492 -19.05503 -18.72250 -18.59151 -18.04606 -17.81029 -17.71388 -17.46184 -17.25988 -17.00356 -16.77619 -16.48958 -16.21864 -16.07259 -15.94791 -15.49560 -15.42037 -15.37889 -14.91282 -14.52447 -14.42968 -14.26350 -14.23597 -14.01267 -13.84501 -13.80458 -13.76769 -13.52349 -13.35479 -13.22754 -13.12404 -13.01935 -12.92767 -12.83837 -12.81986 -12.60276 -12.53543 -12.25145 -12.21139 -12.11654 -11.86116 -11.57353 -11.53330 -11.45379 -10.52479 -10.26205 -9.52841 -5.07340 -1.31992 -0.24317 0.00116 0.83172 1.03940 1.15475 1.47508 1.50807 1.82043 2.04968 2.14577 2.22901 2.49929 2.59037 2.78456 2.86583 3.02959 3.11408 3.19052 3.38841 3.48736 3.59798 3.62188 3.72447 3.80422 3.83333 3.90091 3.91930 3.95408 4.03333 4.05376 4.14031 4.17861 4.25357 4.28537 4.36072 4.37220 4.43742 4.52046 4.55146 4.63542 4.68640 4.77005 4.77252 4.85120 4.88758 4.96835 4.98946 5.31217 5.38796 6.09030 6.40457 6.64529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.475 3.525 5 O -0.500 6.500 6 C -0.108 4.108 7 H 0.136 0.864 8 C -0.120 4.120 9 C 0.104 3.896 10 F -0.178 7.178 11 C -0.671 4.671 12 S 2.595 3.405 13 O -0.928 6.928 14 O -0.912 6.912 15 O -0.659 6.659 16 C 0.107 3.893 17 C -0.181 4.181 18 C 0.176 3.824 19 O -0.297 6.297 20 C 0.017 3.983 21 C -0.087 4.087 22 C -0.070 4.070 23 O -0.530 6.530 24 Si 0.686 3.314 25 C -0.061 4.061 26 C -0.166 4.166 27 C -0.153 4.153 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.381 0.619 43 H -0.257 1.257 44 H -0.251 1.251 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.117 0.883 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -0.784 3.336 3.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.317 3.683 5 O -0.387 6.387 6 C -0.127 4.127 7 H 0.154 0.846 8 C -0.158 4.158 9 C 0.084 3.916 10 F -0.158 7.158 11 C -0.795 4.795 12 S 2.688 3.312 13 O -0.926 6.926 14 O -0.911 6.911 15 O -0.618 6.618 16 C 0.066 3.934 17 C -0.202 4.202 18 C 0.129 3.871 19 O -0.209 6.209 20 C -0.078 4.078 21 C -0.089 4.089 22 C -0.179 4.179 23 O -0.338 6.338 24 Si 0.587 3.413 25 C -0.079 4.079 26 C -0.186 4.186 27 C -0.190 4.190 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.229 0.771 43 H -0.182 1.182 44 H -0.176 1.176 45 H 0.169 0.831 46 H 0.166 0.834 47 H 0.135 0.865 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.569 -0.726 3.396 3.519 hybrid contribution 0.059 0.613 0.270 0.672 sum 0.628 -0.113 3.666 3.721 Atomic orbital electron populations 1.21831 0.92193 1.03346 1.03767 1.23129 0.95722 0.79565 1.02875 1.86512 1.23973 1.33017 1.83545 1.23127 0.80921 0.91762 0.72463 1.90705 1.60523 1.42669 1.44797 1.22292 0.97316 0.92270 1.00863 0.84625 1.23607 0.93475 0.98085 1.00648 1.21503 0.88930 0.93360 0.87800 1.93008 1.65719 1.97208 1.59868 1.31286 1.14841 1.12979 1.20411 1.05615 0.75263 0.74842 0.75441 1.93694 1.51895 1.82454 1.64562 1.93674 1.39642 1.84381 1.73368 1.85756 1.39317 1.58111 1.78659 1.17733 0.80629 1.00384 0.94668 1.21351 0.95062 1.01508 1.02286 1.18483 0.88716 0.89360 0.90525 1.86177 1.44071 1.60477 1.30133 1.23289 1.00813 1.01128 0.82575 1.18833 0.97318 1.00136 0.92621 1.24669 0.96814 0.88996 1.07407 1.86601 1.38124 1.24120 1.84931 0.95130 0.79570 0.88783 0.77824 1.20824 0.92500 0.95360 0.99180 1.21147 0.97679 1.04963 0.94818 1.23912 0.96038 1.02282 0.96794 0.91321 0.89923 0.91250 0.90972 0.90954 0.88106 0.86099 0.81973 0.82346 0.83206 0.92150 0.87361 0.91612 0.89961 0.77119 1.18211 1.17602 0.83081 0.83396 0.86499 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 10.29 37.16 0.38 0.68 16 2 C 0.06 -0.01 6.19 37.16 0.23 0.22 16 3 O -0.35 -0.36 10.22 -39.24 -0.40 -0.76 16 4 C 0.48 0.53 7.48 36.01 0.27 0.80 16 5 O -0.50 -1.93 15.65 -18.75 -0.29 -2.22 16 6 C -0.11 0.20 3.91 -90.96 -0.36 -0.15 16 7 H 0.14 -0.65 7.62 -51.93 -0.40 -1.05 16 8 C -0.12 0.24 6.89 -25.92 -0.18 0.06 16 9 C 0.10 -0.10 1.74 -89.81 -0.16 -0.26 16 10 F -0.18 -0.34 16.53 2.25 0.04 -0.31 16 11 C -0.67 1.99 5.05 37.16 0.19 2.18 16 12 S 2.60 3.41 4.92 -107.50 -0.53 2.88 16 13 O -0.93 -3.52 15.82 -67.03 -1.06 -4.58 16 14 O -0.91 -3.52 16.96 -67.04 -1.14 -4.66 16 15 O -0.66 -0.76 10.05 -51.77 -0.52 -1.28 16 16 C 0.11 0.12 4.79 -39.24 -0.19 -0.07 16 17 C -0.18 -0.33 8.03 -39.29 -0.32 -0.65 16 18 C 0.18 0.33 6.66 -39.24 -0.26 0.07 16 19 O -0.30 -0.51 9.82 -19.41 -0.19 -0.70 16 20 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 21 C -0.09 -0.06 5.31 -104.45 -0.55 -0.62 16 22 C -0.07 0.03 2.36 36.01 0.09 0.12 16 23 O -0.53 -0.47 12.86 -35.23 -0.45 -0.92 16 24 Si 0.69 -1.54 30.20 -169.99 -5.13 -6.67 16 25 C -0.06 0.07 8.65 -39.63 -0.34 -0.27 16 26 C -0.17 0.24 8.47 -39.41 -0.33 -0.09 16 27 C -0.15 0.16 7.05 -25.92 -0.18 -0.02 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 29 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.07 -0.02 8.13 -51.93 -0.42 -0.45 16 32 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 33 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 34 H 0.12 -0.07 7.44 -51.93 -0.39 -0.46 16 35 H 0.16 -1.06 7.32 -51.92 -0.38 -1.44 16 36 H 0.16 -0.86 6.63 -51.92 -0.34 -1.20 16 37 H 0.15 0.12 6.30 -52.49 -0.33 -0.21 16 38 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 39 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 40 H 0.07 -0.10 7.66 -51.93 -0.40 -0.50 16 41 H 0.08 -0.10 7.82 -51.93 -0.41 -0.51 16 42 H 0.38 -1.17 8.74 45.56 0.40 -0.77 16 43 H -0.26 0.00 7.11 56.52 0.40 0.40 16 44 H -0.25 0.06 6.75 56.52 0.38 0.44 16 45 H 0.15 -0.53 4.89 -52.48 -0.26 -0.79 16 46 H 0.15 -0.78 7.53 -52.49 -0.40 -1.18 16 47 H 0.12 -0.12 8.09 -51.93 -0.42 -0.54 16 48 H 0.11 -0.17 6.95 -51.93 -0.36 -0.53 16 LS Contribution 411.14 15.07 6.20 6.20 Total: 0.00 -12.69 411.14 -10.45 -23.14 By element: Atomic # 1 Polarization: -6.85 SS G_CDS: -6.25 Total: -13.10 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.72 Total: 2.97 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -4.06 Total: -15.11 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.13 Total: -6.67 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -0.53 Total: 2.88 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -12.69 -10.45 -23.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.893 kcal (2) G-P(sol) polarization free energy of solvation -12.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds