Wall clock time and date at job start Mon Mar 8 2021 10:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08994 * 112.85133 * 48.80712 * 6 4 3 8 8 C 1.53783 * 113.61301 * 180.02562 * 6 4 3 9 9 C 1.53779 * 87.08121 * 139.98008 * 8 6 4 10 10 F 1.39898 * 113.61550 * 220.01785 * 9 8 6 11 11 C 1.53002 * 113.61248 * 89.20075 * 9 8 6 12 12 S 1.81403 * 109.47031 * 185.00063 * 11 9 8 13 13 O 1.42097 * 110.54292 * 291.62517 * 12 11 9 14 14 O 1.42103 * 110.54078 * 68.37390 * 12 11 9 15 15 O 1.52197 * 104.44878 * 179.97438 * 12 11 9 16 16 C 1.35905 * 113.99541 * 75.00215 * 15 12 11 17 17 C 1.38610 * 120.02622 * 90.00247 * 16 15 12 18 18 C 1.38659 * 119.88964 * 179.97438 * 17 16 15 19 19 O 1.35896 * 120.02853 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99991 * 0.02562 * 19 18 17 21 21 C 1.38750 * 119.94394 * 359.97438 * 18 17 16 22 22 C 1.50703 * 119.97459 * 179.97438 * 21 18 17 23 23 O 1.42895 * 109.46683 * 74.99898 * 22 21 18 24 24 Si 1.86296 * 109.47462 * 195.00211 * 22 21 18 25 25 C 1.38193 * 120.05369 * 359.97438 * 21 18 17 26 26 C 1.38151 * 120.11217 * 359.76130 * 25 21 18 27 27 C 1.53778 * 87.08233 * 334.56910 * 9 8 6 28 28 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 33 33 H 1.09003 * 113.61455 * 254.53311 * 8 6 4 34 34 H 1.09000 * 113.61631 * 25.43210 * 8 6 4 35 35 H 1.09004 * 109.46993 * 304.99974 * 11 9 8 36 36 H 1.08998 * 109.47289 * 65.00268 * 11 9 8 37 37 H 1.08002 * 120.05536 * 359.97112 * 17 16 15 38 38 H 1.08996 * 109.47016 * 59.99738 * 20 19 18 39 39 H 1.08994 * 109.47169 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46987 * 299.99715 * 20 19 18 41 41 H 1.08998 * 109.46763 * 315.00426 * 22 21 18 42 42 H 0.96700 * 113.99964 * 180.02562 * 23 22 21 43 43 H 1.48494 * 110.00111 * 178.68417 * 24 22 21 44 44 H 1.48504 * 109.99982 * 300.00116 * 24 22 21 45 45 H 1.08006 * 119.94730 * 180.02562 * 25 21 18 46 46 H 1.08001 * 119.97391 * 180.25506 * 26 25 21 47 47 H 1.09003 * 113.60935 * 270.88545 * 27 9 8 48 48 H 1.08992 * 113.62150 * 139.98188 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.4709 3.5812 0.7570 8 6 5.4582 2.9682 0.0011 9 6 5.3564 4.1430 -0.9860 10 9 6.3093 4.0993 -2.0093 11 6 5.2784 5.5108 -0.3047 12 16 5.0137 6.7959 -1.5574 13 8 6.1659 6.9384 -2.3767 14 8 3.7184 6.6755 -2.1293 15 8 4.9540 8.0932 -0.7637 16 6 6.1639 8.5276 -0.3228 17 6 6.9257 9.3759 -1.1111 18 6 8.1595 9.8177 -0.6582 19 8 8.9089 10.6491 -1.4290 20 6 8.3637 11.0279 -2.6944 21 6 8.6283 9.4104 0.5825 22 6 9.9694 9.8898 1.0751 23 8 9.8647 11.2531 1.4905 24 14 10.5128 8.8415 2.5161 25 6 7.8664 8.5655 1.3670 26 6 6.6344 8.1282 0.9203 27 6 3.9862 3.5777 -1.3955 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 5.8895 3.2427 0.9638 34 1 5.9127 2.0753 -0.4282 35 1 4.4496 5.5173 0.4033 36 1 6.2105 5.7065 0.2252 37 1 6.5589 9.6921 -2.0765 38 1 7.4163 11.5447 -2.5418 39 1 9.0611 11.6906 -3.2068 40 1 8.1981 10.1369 -3.3001 41 1 10.7014 9.8101 0.2714 42 1 10.6927 11.6286 1.8200 43 1 11.8484 9.2838 2.9909 44 1 9.5230 8.9416 3.6188 45 1 8.2328 8.2499 2.3327 46 1 6.0390 7.4712 1.5370 47 1 4.0383 2.8514 -2.2067 48 1 3.2291 4.3442 -1.5604 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:39 Heat of formation + Delta-G solvation = -235.747624 kcal Electronic energy + Delta-G solvation = -37683.284862 eV Core-core repulsion = 32328.819109 eV Total energy + Delta-G solvation = -5354.465753 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.02657 -42.47553 -41.89884 -40.83093 -39.57391 -38.57799 -38.48997 -37.59950 -37.46805 -37.32894 -32.76177 -32.58992 -31.87487 -31.25171 -28.48494 -27.28932 -27.09049 -26.92850 -24.09733 -23.75937 -23.51513 -22.34903 -21.80959 -20.49524 -19.99304 -19.36968 -19.07794 -18.71207 -18.55725 -18.04595 -17.81827 -17.71718 -17.42894 -17.15542 -16.91729 -16.76784 -16.44434 -16.19403 -16.03723 -15.84431 -15.47405 -15.40172 -15.32235 -14.87006 -14.46356 -14.41126 -14.19783 -14.12060 -13.97087 -13.79938 -13.68024 -13.64054 -13.52056 -13.49791 -13.34398 -13.03204 -12.94971 -12.84853 -12.77479 -12.70911 -12.47653 -12.44141 -12.19664 -12.16146 -12.00358 -11.77755 -11.57283 -11.49798 -11.39429 -10.44000 -10.22986 -9.49739 -4.87053 -1.32388 -0.21990 0.06663 0.83282 1.00355 1.31179 1.56794 1.65036 1.96750 2.11299 2.19765 2.28662 2.64425 2.68461 2.87355 2.98649 3.18169 3.28697 3.32784 3.46619 3.58754 3.71954 3.75457 3.84335 3.96057 3.97321 3.98102 4.03617 4.10605 4.16531 4.23343 4.25756 4.30985 4.32623 4.45456 4.48444 4.50925 4.61211 4.62251 4.74035 4.79988 4.82223 4.83635 4.89812 4.91254 5.05100 5.05972 5.13606 5.41580 5.41706 6.10825 6.60890 6.61017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.534 6.534 6 C -0.101 4.101 7 H 0.176 0.824 8 C -0.114 4.114 9 C 0.093 3.907 10 F -0.200 7.200 11 C -0.649 4.649 12 S 2.585 3.415 13 O -0.967 6.967 14 O -0.951 6.951 15 O -0.661 6.661 16 C 0.087 3.913 17 C -0.204 4.204 18 C 0.154 3.846 19 O -0.314 6.314 20 C 0.012 3.988 21 C -0.102 4.102 22 C -0.091 4.091 23 O -0.555 6.555 24 Si 0.781 3.219 25 C -0.059 4.059 26 C -0.153 4.153 27 C -0.164 4.164 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.210 0.790 36 H 0.193 0.807 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.394 0.606 43 H -0.291 1.291 44 H -0.269 1.269 45 H 0.180 0.820 46 H 0.196 0.804 47 H 0.104 0.896 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -1.518 6.302 6.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.316 3.684 5 O -0.423 6.423 6 C -0.119 4.119 7 H 0.194 0.806 8 C -0.152 4.152 9 C 0.074 3.926 10 F -0.180 7.180 11 C -0.777 4.777 12 S 2.684 3.316 13 O -0.965 6.965 14 O -0.950 6.950 15 O -0.620 6.620 16 C 0.045 3.955 17 C -0.225 4.225 18 C 0.107 3.893 19 O -0.227 6.227 20 C -0.083 4.083 21 C -0.104 4.104 22 C -0.198 4.198 23 O -0.365 6.365 24 Si 0.683 3.317 25 C -0.077 4.077 26 C -0.173 4.173 27 C -0.202 4.202 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.227 0.773 36 H 0.210 0.790 37 H 0.161 0.839 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.244 0.756 43 H -0.218 1.218 44 H -0.195 1.195 45 H 0.197 0.803 46 H 0.213 0.787 47 H 0.123 0.877 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.284 -1.406 6.288 6.450 hybrid contribution 0.153 0.836 -0.671 1.083 sum 0.437 -0.570 5.617 5.663 Atomic orbital electron populations 1.21835 0.90807 1.04248 1.03776 1.23271 0.96865 0.79251 1.02608 1.86523 1.24129 1.33555 1.83302 1.23778 0.80654 0.92684 0.71253 1.90691 1.61120 1.44082 1.46458 1.22522 0.97505 0.90820 1.01091 0.80635 1.23606 0.93384 0.96575 1.01656 1.21796 0.88258 0.94771 0.87791 1.92969 1.66552 1.97386 1.61142 1.31192 1.18694 1.08859 1.19004 1.05611 0.73956 0.75655 0.76369 1.93649 1.52585 1.83436 1.66823 1.93624 1.40966 1.85172 1.75197 1.85722 1.39369 1.58382 1.78555 1.18052 0.80690 1.00947 0.95780 1.21490 0.95702 1.02647 1.02660 1.18748 0.89020 0.90155 0.91371 1.86134 1.44771 1.60860 1.30936 1.23435 1.01430 1.01408 0.81996 1.19235 0.98119 1.00543 0.92489 1.25119 0.96527 0.89042 1.09089 1.86551 1.39497 1.25222 1.85258 0.94068 0.76240 0.87004 0.74397 1.21199 0.92323 0.94402 0.99753 1.21673 0.97579 1.04286 0.93731 1.23993 0.96494 1.02387 0.97337 0.91015 0.88616 0.91452 0.90973 0.91568 0.84593 0.88060 0.77276 0.78957 0.83907 0.91938 0.85746 0.91764 0.90041 0.75604 1.21804 1.19500 0.80320 0.78669 0.87713 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.59 10.22 -51.36 -0.52 -1.12 16 4 C 0.47 0.80 7.48 71.24 0.53 1.33 16 5 O -0.53 -4.30 15.65 21.96 0.34 -3.96 16 6 C -0.10 0.60 3.91 -11.01 -0.04 0.55 16 7 H 0.18 -2.49 7.62 -2.39 -0.02 -2.51 16 8 C -0.11 0.71 6.89 31.12 0.21 0.93 16 9 C 0.09 -0.32 1.74 -10.27 -0.02 -0.34 16 10 F -0.20 -0.86 16.53 44.97 0.74 -0.12 16 11 C -0.65 5.86 5.05 71.98 0.36 6.23 16 12 S 2.59 7.06 4.92 -56.49 -0.28 6.78 16 13 O -0.97 -9.00 15.82 -118.57 -1.88 -10.88 16 14 O -0.95 -8.37 16.96 -118.57 -2.01 -10.38 16 15 O -0.66 -1.41 10.05 -61.57 -0.62 -2.02 16 16 C 0.09 0.16 4.79 22.49 0.11 0.26 16 17 C -0.20 -1.08 8.03 22.46 0.18 -0.90 16 18 C 0.15 0.79 6.66 22.49 0.15 0.94 16 19 O -0.31 -1.74 9.82 -92.38 -0.91 -2.65 16 20 C 0.01 0.00 9.81 113.37 1.11 1.11 16 21 C -0.10 -0.13 5.31 -19.75 -0.10 -0.24 16 22 C -0.09 0.08 2.36 71.24 0.17 0.25 16 23 O -0.56 -1.27 12.86 -148.98 -1.92 -3.19 16 24 Si 0.78 -4.67 30.20 68.60 2.07 -2.60 16 25 C -0.06 0.27 8.65 22.24 0.19 0.47 16 26 C -0.15 0.87 8.47 22.38 0.19 1.06 16 27 C -0.16 0.43 7.05 31.12 0.22 0.65 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 32 H 0.07 0.04 8.13 -2.39 -0.02 0.03 16 33 H 0.14 -1.80 8.10 -2.39 -0.02 -1.82 16 34 H 0.10 -0.16 7.44 -2.39 -0.02 -0.18 16 35 H 0.21 -3.90 7.32 -2.39 -0.02 -3.92 16 36 H 0.19 -3.00 6.63 -2.39 -0.02 -3.02 16 37 H 0.14 0.69 6.30 -2.91 -0.02 0.68 16 38 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 39 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.06 -0.01 7.66 -2.39 -0.02 -0.03 16 41 H 0.08 -0.13 7.82 -2.39 -0.02 -0.15 16 42 H 0.39 -2.18 8.74 -74.06 -0.65 -2.82 16 43 H -0.29 0.16 7.11 99.48 0.71 0.87 16 44 H -0.27 0.81 6.75 99.48 0.67 1.48 16 45 H 0.18 -1.90 4.89 -2.91 -0.01 -1.92 16 46 H 0.20 -3.15 7.53 -2.91 -0.02 -3.18 16 47 H 0.10 -0.06 8.09 -2.39 -0.02 -0.08 16 48 H 0.12 -0.40 6.95 -2.39 -0.02 -0.42 16 Total: 0.00 -34.83 411.14 -0.14 -34.97 By element: Atomic # 1 Polarization: -19.34 SS G_CDS: 0.38 Total: -18.96 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 4.45 Total: 14.13 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -7.51 Total: -34.19 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.74 Total: -0.12 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.07 Total: -2.60 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -0.28 Total: 6.78 kcal Total: -34.83 -0.14 -34.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.773 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds