Wall clock time and date at job start Mon Mar 8 2021 10:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99688 * 2 1 4 4 C 1.38758 * 120.02501 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97205 * 0.02892 * 4 3 2 6 6 O 1.42895 * 109.47569 * 75.01584 * 5 4 3 7 7 Si 1.86297 * 109.47016 * 195.01986 * 5 4 3 8 8 C 1.38201 * 120.05366 * 180.02562 * 4 3 2 9 9 C 1.38148 * 120.10856 * 0.02562 * 8 4 3 10 10 C 1.38800 * 120.05811 * 359.97438 * 9 8 4 11 11 O 1.35888 * 120.02744 * 179.97438 * 10 9 8 12 12 S 1.52194 * 114.00228 * 90.00556 * 11 10 9 13 13 O 1.42106 * 104.27773 * 318.92786 * 12 11 10 14 14 O 1.42104 * 104.28287 * 191.07013 * 12 11 10 15 15 C 1.81404 * 104.45026 * 74.99468 * 12 11 10 16 16 H 1.08993 * 112.90848 * 311.25354 * 15 12 11 17 17 C 1.53962 * 113.66432 * 82.55531 * 15 12 11 18 18 C 1.53782 * 87.11063 * 139.88959 * 17 15 12 19 19 H 1.09001 * 113.61250 * 220.08565 * 18 17 15 20 20 O 1.42902 * 113.68887 * 89.20074 * 18 17 15 21 21 C 1.42897 * 114.00229 * 112.46304 * 20 18 17 22 22 C 1.50702 * 109.47228 * 179.97438 * 21 20 18 23 23 C 1.38234 * 119.99826 * 269.72714 * 22 21 20 24 24 C 1.38238 * 119.99446 * 179.78392 * 23 22 21 25 25 C 1.38234 * 120.00327 * 0.44792 * 24 23 22 26 26 C 1.38237 * 119.99649 * 359.80569 * 25 24 23 27 27 C 1.38232 * 119.99523 * 89.99705 * 22 21 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 29 29 C 1.38613 * 119.94086 * 0.24061 * 10 9 8 30 30 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46908 * 300.00096 * 1 2 3 32 32 H 1.08999 * 109.47079 * 60.00107 * 1 2 3 33 33 H 1.09001 * 109.46777 * 315.01518 * 5 4 3 34 34 H 0.96698 * 114.00060 * 60.00441 * 6 5 4 35 35 H 1.48500 * 110.00122 * 179.97438 * 7 5 4 36 36 H 1.48495 * 110.00144 * 301.31554 * 7 5 4 37 37 H 1.07999 * 119.94528 * 179.97438 * 8 4 3 38 38 H 1.08000 * 119.97315 * 179.97438 * 9 8 4 39 39 H 1.08997 * 113.53543 * 25.33633 * 17 15 12 40 40 H 1.08998 * 113.73879 * 254.47231 * 17 15 12 41 41 H 1.09001 * 109.46951 * 300.00069 * 21 20 18 42 42 H 1.09004 * 109.46962 * 59.99630 * 21 20 18 43 43 H 1.08001 * 120.00176 * 0.02562 * 23 22 21 44 44 H 1.07995 * 119.99459 * 180.27337 * 24 23 22 45 45 H 1.07998 * 120.00083 * 179.83022 * 25 24 23 46 46 H 1.08004 * 119.99939 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00313 * 359.97438 * 27 22 21 48 48 H 1.09002 * 113.61445 * 139.98212 * 28 18 17 49 49 H 1.09002 * 113.61408 * 270.79943 * 28 18 17 50 50 H 1.08002 * 120.05145 * 179.74883 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.2523 0.0203 0.0005 6 8 4.2202 -0.5685 -1.3011 7 14 6.0131 0.4234 0.4564 8 6 4.0595 2.5153 0.0011 9 6 3.3098 3.6757 0.0016 10 6 1.9235 3.6077 0.0011 11 8 1.1867 4.7495 0.0021 12 16 0.8513 5.2711 -1.3877 13 8 2.0487 5.0854 -2.1301 14 8 0.3267 6.5715 -1.1570 15 6 -0.4487 4.1574 -1.9878 16 1 -0.1990 3.1045 -1.8572 17 6 -1.8571 4.5242 -1.4854 18 6 -2.3657 4.1752 -2.8941 19 1 -3.1299 4.8587 -3.2642 20 8 -2.7275 2.8016 -3.0500 21 6 -4.1268 2.5876 -3.2453 22 6 -4.3929 1.1121 -3.3978 23 6 -4.3698 0.5316 -4.6521 24 6 -4.6095 -0.8227 -4.7914 25 6 -4.8814 -1.5947 -3.6774 26 6 -4.9096 -1.0132 -2.4237 27 6 -4.6656 0.3403 -2.2838 28 6 -0.9506 4.5009 -3.4003 29 6 1.2913 2.3741 0.0050 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.8403 -0.6804 0.7266 34 1 4.5725 0.0005 -1.9991 35 1 6.8329 -0.8148 0.4605 36 1 6.5760 1.4025 -0.5077 37 1 5.1381 2.5703 0.0019 38 1 3.8028 4.6366 0.0024 39 1 -1.9674 5.5780 -1.2300 40 1 -2.2329 3.8587 -0.7082 41 1 -4.6763 2.9692 -2.3848 42 1 -4.4522 3.1100 -4.1450 43 1 -4.1607 1.1354 -5.5228 44 1 -4.5871 -1.2770 -5.7709 45 1 -5.0713 -2.6523 -3.7866 46 1 -5.1216 -1.6164 -1.5532 47 1 -4.6875 0.7946 -1.3043 48 1 -0.5935 3.8157 -4.1692 49 1 -0.8135 5.5481 -3.6698 50 1 0.2127 2.3191 0.0087 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:14 Heat of formation + Delta-G solvation = -113.213820 kcal Electronic energy + Delta-G solvation = -37698.450083 eV Core-core repulsion = 32752.755541 eV Total energy + Delta-G solvation = -4945.694542 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.126 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.43405 -40.95634 -40.79777 -40.07166 -38.66247 -38.30639 -37.34522 -37.20095 -37.13066 -32.82517 -32.49400 -31.92426 -31.56882 -28.60394 -27.63446 -27.22853 -26.89825 -26.59422 -23.86856 -23.61350 -23.56324 -22.41174 -21.95292 -21.17424 -19.79084 -19.38833 -18.86321 -18.43996 -18.17985 -17.83253 -17.50243 -17.28456 -17.01892 -16.83751 -16.73094 -16.58279 -16.22323 -15.94082 -15.86626 -15.69260 -15.43487 -15.33621 -14.92890 -14.65433 -14.43909 -14.34760 -14.20078 -14.08614 -13.97050 -13.74850 -13.62679 -13.53916 -13.43026 -13.34132 -13.23959 -13.14376 -12.88826 -12.69334 -12.31010 -12.25830 -12.20121 -12.14220 -12.02638 -11.90454 -11.69916 -11.32342 -10.75754 -10.60633 -10.27679 -9.93791 -9.88468 -9.46796 -4.99253 -1.13169 -0.20765 0.08745 0.21030 0.38555 0.92488 1.23106 1.54087 1.93010 2.05445 2.20328 2.24738 2.46161 2.63937 2.84563 2.93190 3.14657 3.27471 3.34251 3.42103 3.52411 3.60852 3.67649 3.74821 3.76559 3.79024 3.92427 3.96402 3.99757 4.04801 4.09077 4.12633 4.16628 4.18369 4.20892 4.25727 4.44080 4.46004 4.48564 4.49791 4.57993 4.60017 4.63612 4.71084 4.74459 4.79645 4.93301 4.96255 5.00709 5.02016 5.37607 5.42466 5.50733 5.52477 5.94157 5.99270 6.09395 6.42523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.294 6.294 3 C 0.175 3.825 4 C -0.134 4.134 5 C -0.066 4.066 6 O -0.521 6.521 7 Si 0.688 3.312 8 C -0.067 4.067 9 C -0.120 4.120 10 C 0.113 3.887 11 O -0.661 6.661 12 S 2.594 3.406 13 O -0.944 6.944 14 O -0.920 6.920 15 C -0.640 4.640 16 H 0.156 0.844 17 C -0.130 4.130 18 C 0.078 3.922 19 H 0.090 0.910 20 O -0.357 6.357 21 C 0.101 3.899 22 C -0.095 4.095 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.100 4.100 28 C -0.107 4.107 29 C -0.225 4.225 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.375 0.625 35 H -0.253 1.253 36 H -0.255 1.255 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -1.914 1.187 4.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.206 6.206 3 C 0.128 3.872 4 C -0.136 4.136 5 C -0.175 4.175 6 O -0.327 6.327 7 Si 0.589 3.411 8 C -0.084 4.084 9 C -0.141 4.141 10 C 0.071 3.929 11 O -0.620 6.620 12 S 2.690 3.310 13 O -0.943 6.943 14 O -0.918 6.918 15 C -0.748 4.748 16 H 0.173 0.827 17 C -0.168 4.168 18 C 0.019 3.981 19 H 0.108 0.892 20 O -0.276 6.276 21 C 0.025 3.975 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.129 4.129 26 C -0.141 4.141 27 C -0.118 4.118 28 C -0.146 4.146 29 C -0.246 4.246 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.222 0.778 35 H -0.178 1.178 36 H -0.180 1.180 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.334 -2.125 1.476 3.485 hybrid contribution -1.346 0.017 -1.271 1.851 sum -3.680 -2.108 0.205 4.246 Atomic orbital electron populations 1.23241 0.77665 1.04983 1.01693 1.86226 1.21742 1.25154 1.87491 1.18407 0.91226 0.83927 0.93609 1.19909 0.91457 0.96440 1.05767 1.24940 1.09323 0.94559 0.88718 1.86664 1.85099 1.44814 1.16158 0.95038 0.74232 0.81456 0.90387 1.20960 1.00713 0.90182 0.96575 1.21180 0.91263 1.00558 1.01083 1.17705 0.89542 0.80863 1.04749 1.85710 1.72734 1.45941 1.57568 1.05580 0.76134 0.75928 0.73328 1.93665 1.42400 1.86342 1.71877 1.93656 1.81510 1.34217 1.82443 1.32237 1.15241 1.17927 1.09348 0.82665 1.23282 0.90335 1.03910 0.99283 1.22821 0.96089 0.84234 0.94960 0.89201 1.87963 1.23693 1.23268 1.92627 1.21452 0.82233 0.92839 1.00959 1.19542 1.01769 0.94428 0.93797 1.21094 0.98478 0.95175 0.96842 1.21213 0.99805 0.93913 0.99089 1.21278 0.98775 1.00153 0.92740 1.21196 1.00282 0.94934 0.97715 1.21061 0.98681 0.93951 0.98074 1.22853 0.95572 1.03270 0.92865 1.21370 1.01486 0.90911 1.10811 0.87435 0.92185 0.92147 0.86018 0.77807 1.17818 1.18041 0.83154 0.83486 0.86733 0.88782 0.91955 0.91881 0.85876 0.85701 0.85778 0.85738 0.85983 0.88020 0.87607 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.29 -0.34 9.82 -19.42 -0.19 -0.53 16 3 C 0.18 0.19 6.66 -39.24 -0.26 -0.07 16 4 C -0.13 -0.07 5.27 -104.44 -0.55 -0.62 16 5 C -0.07 0.00 2.37 36.00 0.09 0.08 16 6 O -0.52 -0.86 12.88 -35.23 -0.45 -1.32 16 7 Si 0.69 -0.93 30.24 -169.99 -5.14 -6.07 16 8 C -0.07 0.01 8.65 -39.63 -0.34 -0.33 16 9 C -0.12 -0.15 9.04 -39.41 -0.36 -0.51 16 10 C 0.11 0.21 4.79 -39.24 -0.19 0.02 16 11 O -0.66 -1.47 10.05 -51.71 -0.52 -1.99 16 12 S 2.59 5.78 5.14 -107.50 -0.55 5.23 16 13 O -0.94 -4.18 16.26 -67.04 -1.09 -5.27 16 14 O -0.92 -4.38 17.27 -67.04 -1.16 -5.54 16 15 C -0.64 0.42 3.98 -25.82 -0.10 0.32 16 16 H 0.16 -0.22 6.12 -51.93 -0.32 -0.53 16 17 C -0.13 0.22 7.48 -25.82 -0.19 0.03 16 18 C 0.08 -0.13 4.37 -25.92 -0.11 -0.24 16 19 H 0.09 -0.30 7.87 -51.93 -0.41 -0.71 16 20 O -0.36 0.04 10.26 -35.23 -0.36 -0.32 16 21 C 0.10 -0.13 5.90 36.01 0.21 0.09 16 22 C -0.10 -0.01 5.51 -104.62 -0.58 -0.59 16 23 C -0.10 -0.02 9.70 -39.58 -0.38 -0.40 16 24 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 25 C -0.11 0.02 10.05 -39.58 -0.40 -0.38 16 26 C -0.12 0.04 10.05 -39.58 -0.40 -0.35 16 27 C -0.10 0.02 9.70 -39.58 -0.38 -0.36 16 28 C -0.11 0.14 7.49 -25.92 -0.19 -0.06 16 29 C -0.23 -0.12 7.49 -39.29 -0.29 -0.41 16 30 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 31 H 0.06 -0.18 7.65 -51.93 -0.40 -0.58 16 32 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 33 H 0.12 -0.01 7.82 -51.93 -0.41 -0.42 16 34 H 0.37 -0.49 8.70 45.56 0.40 -0.09 16 35 H -0.25 -0.50 7.11 56.52 0.40 -0.09 16 36 H -0.26 0.01 6.68 56.52 0.38 0.39 16 37 H 0.15 -0.34 4.85 -52.49 -0.25 -0.59 16 38 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 39 H 0.11 -0.24 7.43 -51.93 -0.39 -0.63 16 40 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 41 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 42 H 0.06 -0.14 8.08 -51.93 -0.42 -0.56 16 43 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 44 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 45 H 0.12 -0.22 8.06 -52.49 -0.42 -0.65 16 46 H 0.12 -0.26 8.06 -52.48 -0.42 -0.69 16 47 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 48 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 49 H 0.11 -0.29 8.10 -51.93 -0.42 -0.71 16 50 H 0.15 -0.25 5.51 -52.49 -0.29 -0.54 16 LS Contribution 424.76 15.07 6.40 6.40 Total: 0.00 -10.69 424.76 -13.66 -24.35 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -6.75 Total: -11.72 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.85 Total: -3.23 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -3.77 Total: -14.96 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.14 Total: -6.07 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -0.55 Total: 5.23 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -10.69 -13.66 -24.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.865 kcal (2) G-P(sol) polarization free energy of solvation -10.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds