Wall clock time and date at job start Mon Mar 8 2021 10:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99688 * 2 1 4 4 C 1.38758 * 120.02501 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97205 * 0.02892 * 4 3 2 6 6 O 1.42895 * 109.47569 * 75.01584 * 5 4 3 7 7 Si 1.86297 * 109.47016 * 195.01986 * 5 4 3 8 8 C 1.38201 * 120.05366 * 180.02562 * 4 3 2 9 9 C 1.38148 * 120.10856 * 0.02562 * 8 4 3 10 10 C 1.38800 * 120.05811 * 359.97438 * 9 8 4 11 11 O 1.35888 * 120.02744 * 179.97438 * 10 9 8 12 12 S 1.52194 * 114.00228 * 90.00556 * 11 10 9 13 13 O 1.42106 * 104.27773 * 318.92786 * 12 11 10 14 14 O 1.42104 * 104.28287 * 191.07013 * 12 11 10 15 15 C 1.81404 * 104.45026 * 74.99468 * 12 11 10 16 16 H 1.08993 * 112.90848 * 311.25354 * 15 12 11 17 17 C 1.53962 * 113.66432 * 82.55531 * 15 12 11 18 18 C 1.53782 * 87.11063 * 139.88959 * 17 15 12 19 19 H 1.09001 * 113.61250 * 220.08565 * 18 17 15 20 20 O 1.42902 * 113.68887 * 89.20074 * 18 17 15 21 21 C 1.42897 * 114.00229 * 112.46304 * 20 18 17 22 22 C 1.50702 * 109.47228 * 179.97438 * 21 20 18 23 23 C 1.38234 * 119.99826 * 269.72714 * 22 21 20 24 24 C 1.38238 * 119.99446 * 179.78392 * 23 22 21 25 25 C 1.38234 * 120.00327 * 0.44792 * 24 23 22 26 26 C 1.38237 * 119.99649 * 359.80569 * 25 24 23 27 27 C 1.38232 * 119.99523 * 89.99705 * 22 21 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 29 29 C 1.38613 * 119.94086 * 0.24061 * 10 9 8 30 30 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46908 * 300.00096 * 1 2 3 32 32 H 1.08999 * 109.47079 * 60.00107 * 1 2 3 33 33 H 1.09001 * 109.46777 * 315.01518 * 5 4 3 34 34 H 0.96698 * 114.00060 * 60.00441 * 6 5 4 35 35 H 1.48500 * 110.00122 * 179.97438 * 7 5 4 36 36 H 1.48495 * 110.00144 * 301.31554 * 7 5 4 37 37 H 1.07999 * 119.94528 * 179.97438 * 8 4 3 38 38 H 1.08000 * 119.97315 * 179.97438 * 9 8 4 39 39 H 1.08997 * 113.53543 * 25.33633 * 17 15 12 40 40 H 1.08998 * 113.73879 * 254.47231 * 17 15 12 41 41 H 1.09001 * 109.46951 * 300.00069 * 21 20 18 42 42 H 1.09004 * 109.46962 * 59.99630 * 21 20 18 43 43 H 1.08001 * 120.00176 * 0.02562 * 23 22 21 44 44 H 1.07995 * 119.99459 * 180.27337 * 24 23 22 45 45 H 1.07998 * 120.00083 * 179.83022 * 25 24 23 46 46 H 1.08004 * 119.99939 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00313 * 359.97438 * 27 22 21 48 48 H 1.09002 * 113.61445 * 139.98212 * 28 18 17 49 49 H 1.09002 * 113.61408 * 270.79943 * 28 18 17 50 50 H 1.08002 * 120.05145 * 179.74883 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.2523 0.0203 0.0005 6 8 4.2202 -0.5685 -1.3011 7 14 6.0131 0.4234 0.4564 8 6 4.0595 2.5153 0.0011 9 6 3.3098 3.6757 0.0016 10 6 1.9235 3.6077 0.0011 11 8 1.1867 4.7495 0.0021 12 16 0.8513 5.2711 -1.3877 13 8 2.0487 5.0854 -2.1301 14 8 0.3267 6.5715 -1.1570 15 6 -0.4487 4.1574 -1.9878 16 1 -0.1990 3.1045 -1.8572 17 6 -1.8571 4.5242 -1.4854 18 6 -2.3657 4.1752 -2.8941 19 1 -3.1299 4.8587 -3.2642 20 8 -2.7275 2.8016 -3.0500 21 6 -4.1268 2.5876 -3.2453 22 6 -4.3929 1.1121 -3.3978 23 6 -4.3698 0.5316 -4.6521 24 6 -4.6095 -0.8227 -4.7914 25 6 -4.8814 -1.5947 -3.6774 26 6 -4.9096 -1.0132 -2.4237 27 6 -4.6656 0.3403 -2.2838 28 6 -0.9506 4.5009 -3.4003 29 6 1.2913 2.3741 0.0050 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.8403 -0.6804 0.7266 34 1 4.5725 0.0005 -1.9991 35 1 6.8329 -0.8148 0.4605 36 1 6.5760 1.4025 -0.5077 37 1 5.1381 2.5703 0.0019 38 1 3.8028 4.6366 0.0024 39 1 -1.9674 5.5780 -1.2300 40 1 -2.2329 3.8587 -0.7082 41 1 -4.6763 2.9692 -2.3848 42 1 -4.4522 3.1100 -4.1450 43 1 -4.1607 1.1354 -5.5228 44 1 -4.5871 -1.2770 -5.7709 45 1 -5.0713 -2.6523 -3.7866 46 1 -5.1216 -1.6164 -1.5532 47 1 -4.6875 0.7946 -1.3043 48 1 -0.5935 3.8157 -4.1692 49 1 -0.8135 5.5481 -3.6698 50 1 0.2127 2.3191 0.0087 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:13 Heat of formation + Delta-G solvation = -113.307891 kcal Electronic energy + Delta-G solvation = -37698.454162 eV Core-core repulsion = 32752.755541 eV Total energy + Delta-G solvation = -4945.698621 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.126 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.49617 -40.90919 -40.76828 -39.97348 -38.68308 -38.51967 -37.46063 -37.34508 -37.05792 -32.73082 -32.52250 -31.83546 -31.56987 -28.49349 -27.54126 -27.12396 -26.89994 -26.50393 -23.88155 -23.59632 -23.52491 -22.31446 -21.98659 -21.10660 -19.85339 -19.44636 -18.95077 -18.49293 -18.18455 -17.77016 -17.40741 -17.29368 -16.99950 -16.75953 -16.64669 -16.57541 -16.22050 -15.94833 -15.84592 -15.69093 -15.37354 -15.30280 -14.88999 -14.69190 -14.34955 -14.28758 -14.27914 -14.12952 -13.86838 -13.68162 -13.61927 -13.58772 -13.51522 -13.39912 -13.32824 -13.20427 -12.86184 -12.65902 -12.22770 -12.20773 -12.17055 -12.06489 -11.90514 -11.78135 -11.72400 -11.28303 -10.61888 -10.61537 -10.29738 -9.87003 -9.81307 -9.49830 -4.90844 -1.23850 -0.25482 0.05569 0.28320 0.45274 0.81592 1.28111 1.59520 1.96075 2.11898 2.17742 2.36020 2.39284 2.61584 2.88311 2.95449 3.20735 3.35581 3.42221 3.45064 3.53921 3.64642 3.73996 3.79430 3.85719 3.89159 3.92860 4.10808 4.18190 4.18793 4.23727 4.25798 4.28747 4.31936 4.38471 4.42930 4.49286 4.57940 4.63822 4.64435 4.70201 4.72698 4.73238 4.77427 4.79452 4.83429 4.95054 5.00096 5.03949 5.10868 5.36638 5.50617 5.58267 5.60354 6.04493 6.13019 6.14595 6.50095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.165 3.835 4 C -0.137 4.137 5 C -0.077 4.077 6 O -0.543 6.543 7 Si 0.773 3.227 8 C -0.062 4.062 9 C -0.137 4.137 10 C 0.094 3.906 11 O -0.665 6.665 12 S 2.595 3.405 13 O -0.974 6.974 14 O -0.953 6.953 15 C -0.624 4.624 16 H 0.164 0.836 17 C -0.130 4.130 18 C 0.079 3.921 19 H 0.111 0.889 20 O -0.371 6.371 21 C 0.100 3.900 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.109 4.109 28 C -0.116 4.116 29 C -0.222 4.222 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.385 0.615 35 H -0.299 1.299 36 H -0.268 1.268 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -2.094 1.483 5.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.223 6.223 3 C 0.118 3.882 4 C -0.139 4.139 5 C -0.185 4.185 6 O -0.351 6.351 7 Si 0.676 3.324 8 C -0.080 4.080 9 C -0.157 4.157 10 C 0.052 3.948 11 O -0.624 6.624 12 S 2.695 3.305 13 O -0.973 6.973 14 O -0.951 6.951 15 C -0.734 4.734 16 H 0.182 0.818 17 C -0.169 4.169 18 C 0.020 3.980 19 H 0.129 0.871 20 O -0.291 6.291 21 C 0.024 3.976 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.155 4.155 29 C -0.243 4.243 30 H 0.136 0.864 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.234 0.766 35 H -0.227 1.227 36 H -0.194 1.194 37 H 0.188 0.812 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.120 0.880 49 H 0.136 0.864 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.216 -2.265 1.781 4.318 hybrid contribution -1.115 -0.035 -1.386 1.779 sum -4.331 -2.300 0.396 4.920 Atomic orbital electron populations 1.23458 0.76335 1.06020 1.02540 1.86209 1.23265 1.25266 1.87524 1.18580 0.91622 0.84141 0.93833 1.20048 0.91574 0.96727 1.05571 1.25207 1.10702 0.94394 0.88204 1.86625 1.85558 1.45792 1.17112 0.94047 0.71083 0.78396 0.88859 1.21132 1.01579 0.89477 0.95767 1.21427 0.91493 1.01359 1.01428 1.17960 0.89937 0.81073 1.05796 1.85669 1.72975 1.46336 1.57390 1.05439 0.76248 0.75891 0.72943 1.93616 1.44461 1.86744 1.72440 1.93606 1.81905 1.36640 1.82949 1.32115 1.14150 1.17117 1.10064 0.81820 1.23402 0.89023 1.04556 0.99886 1.22877 0.96268 0.84111 0.94775 0.87121 1.87937 1.24333 1.24080 1.92720 1.21533 0.81923 0.92117 1.02027 1.19790 1.01692 0.95350 0.93844 1.21313 0.98854 0.95503 0.97432 1.21450 0.99974 0.94170 0.99792 1.21533 0.98883 1.00927 0.92923 1.21467 1.00055 0.95300 0.98226 1.21313 0.98499 0.94121 0.98728 1.23049 0.95996 1.04154 0.92281 1.21511 1.02487 0.90195 1.10104 0.86425 0.90770 0.91808 0.86109 0.76604 1.22715 1.19370 0.81231 0.83022 0.86309 0.87442 0.90621 0.90979 0.85175 0.84740 0.84607 0.84284 0.84571 0.88013 0.86413 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.31 -0.72 9.82 -92.41 -0.91 -1.63 16 3 C 0.17 0.38 6.66 22.49 0.15 0.53 16 4 C -0.14 -0.15 5.27 -19.75 -0.10 -0.26 16 5 C -0.08 -0.02 2.37 71.24 0.17 0.14 16 6 O -0.54 -2.05 12.88 -148.98 -1.92 -3.97 16 7 Si 0.77 -2.17 30.24 68.60 2.07 -0.09 16 8 C -0.06 0.02 8.65 22.24 0.19 0.21 16 9 C -0.14 -0.42 9.04 22.38 0.20 -0.22 16 10 C 0.09 0.39 4.79 22.49 0.11 0.50 16 11 O -0.66 -3.48 10.05 -61.38 -0.62 -4.10 16 12 S 2.59 13.75 5.14 -56.49 -0.29 13.46 16 13 O -0.97 -9.93 16.26 -118.57 -1.93 -11.85 16 14 O -0.95 -10.14 17.27 -118.57 -2.05 -12.19 16 15 C -0.62 1.03 3.98 31.18 0.12 1.16 16 16 H 0.16 -0.54 6.12 -2.39 -0.01 -0.56 16 17 C -0.13 0.59 7.48 31.18 0.23 0.83 16 18 C 0.08 -0.36 4.37 31.12 0.14 -0.23 16 19 H 0.11 -0.96 7.87 -2.39 -0.02 -0.98 16 20 O -0.37 0.55 10.26 -148.98 -1.53 -0.98 16 21 C 0.10 -0.36 5.90 71.24 0.42 0.06 16 22 C -0.11 0.03 5.51 -19.87 -0.11 -0.08 16 23 C -0.11 -0.05 9.70 22.27 0.22 0.16 16 24 C -0.14 -0.03 10.05 22.27 0.22 0.19 16 25 C -0.12 0.05 10.05 22.27 0.22 0.27 16 26 C -0.13 0.15 10.05 22.27 0.22 0.37 16 27 C -0.11 0.12 9.70 22.27 0.22 0.34 16 28 C -0.12 0.37 7.49 31.12 0.23 0.60 16 29 C -0.22 -0.23 7.49 22.46 0.17 -0.06 16 30 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.07 -0.53 7.65 -2.39 -0.02 -0.55 16 32 H 0.06 -0.31 7.67 -2.39 -0.02 -0.33 16 33 H 0.12 0.02 7.82 -2.39 -0.02 0.00 16 34 H 0.38 -0.83 8.70 -74.06 -0.64 -1.48 16 35 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 36 H -0.27 0.22 6.68 99.48 0.66 0.89 16 37 H 0.17 -0.86 4.85 -2.91 -0.01 -0.88 16 38 H 0.15 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.12 -0.60 7.43 -2.39 -0.02 -0.61 16 40 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.08 -0.50 8.09 -2.39 -0.02 -0.51 16 42 H 0.07 -0.41 8.08 -2.38 -0.02 -0.43 16 43 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 44 H 0.13 -0.38 8.06 -2.91 -0.02 -0.41 16 45 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 46 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 47 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 48 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.12 -0.67 8.10 -2.39 -0.02 -0.69 16 50 H 0.17 -0.68 5.51 -2.91 -0.02 -0.70 16 Total: 0.00 -25.05 424.76 -2.69 -27.74 By element: Atomic # 1 Polarization: -12.30 SS G_CDS: 0.33 Total: -11.97 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.14 Total: 5.58 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -8.95 Total: -34.71 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.07 Total: -0.09 kcal Atomic # 16 Polarization: 13.75 SS G_CDS: -0.29 Total: 13.46 kcal Total: -25.05 -2.69 -27.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.569 kcal (2) G-P(sol) polarization free energy of solvation -25.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds