Wall clock time and date at job start Mon Mar 8 2021 10:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45201 * 109.47028 * 2 1 4 4 C 1.34226 * 117.00025 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99651 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00020 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46836 * 299.99992 * 6 4 3 8 8 C 1.52997 * 109.46596 * 60.00393 * 6 4 3 9 9 C 1.53003 * 109.46911 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47161 * 300.00130 * 9 8 6 11 11 F 1.39902 * 109.47232 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46895 * 299.99755 * 10 9 8 13 13 S 1.81392 * 109.47323 * 304.99895 * 12 10 9 14 14 O 1.42099 * 110.54324 * 68.37421 * 13 12 10 15 15 O 1.42105 * 110.54625 * 291.62550 * 13 12 10 16 16 O 1.52197 * 104.45265 * 180.02562 * 13 12 10 17 17 C 1.35896 * 114.00260 * 74.99871 * 16 13 12 18 18 C 1.38612 * 120.02768 * 270.02350 * 17 16 13 19 19 C 1.38658 * 119.88961 * 179.70431 * 18 17 16 20 20 O 1.35896 * 120.02806 * 180.27375 * 19 18 17 21 21 C 1.42902 * 116.99906 * 0.24866 * 20 19 18 22 22 C 1.38745 * 119.94292 * 0.52298 * 19 18 17 23 23 C 1.50707 * 119.97168 * 179.74570 * 22 19 18 24 24 O 1.42903 * 109.46442 * 74.73106 * 23 22 19 25 25 Si 1.86293 * 109.47256 * 194.72672 * 23 22 19 26 26 C 1.38200 * 120.05901 * 359.47836 * 22 19 18 27 27 C 1.38154 * 120.10428 * 0.27299 * 26 22 19 28 28 C 1.53006 * 109.47124 * 59.99739 * 10 9 8 29 29 C 1.52997 * 109.47192 * 299.99894 * 28 10 9 30 30 H 1.08997 * 109.47013 * 59.99885 * 1 2 3 31 31 H 1.09005 * 109.46779 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46714 * 299.99706 * 1 2 3 33 33 H 1.09002 * 109.46714 * 240.00294 * 2 1 3 34 34 H 1.08997 * 109.47013 * 120.00115 * 2 1 3 35 35 H 1.09000 * 109.47497 * 299.99391 * 8 6 4 36 36 H 1.08998 * 109.47856 * 60.00224 * 8 6 4 37 37 H 1.08992 * 109.47578 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46779 * 59.99872 * 9 8 6 39 39 H 1.09003 * 109.47206 * 184.99662 * 12 10 9 40 40 H 1.09005 * 109.47174 * 65.00343 * 12 10 9 41 41 H 1.08002 * 120.05530 * 359.95732 * 18 17 16 42 42 H 1.09007 * 109.47127 * 60.00238 * 21 20 19 43 43 H 1.08998 * 109.47121 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.47589 * 300.00377 * 21 20 19 45 45 H 1.08999 * 109.47345 * 314.73176 * 23 22 19 46 46 H 0.96700 * 114.00311 * 60.00230 * 24 23 22 47 47 H 1.48506 * 109.99973 * 180.02562 * 25 23 22 48 48 H 1.48493 * 110.00375 * 301.32185 * 25 23 22 49 49 H 1.07994 * 119.94588 * 180.29294 * 26 22 19 50 50 H 1.08003 * 119.96899 * 180.02562 * 27 26 22 51 51 H 1.09000 * 109.47090 * 60.00402 * 28 10 9 52 52 H 1.09002 * 109.46765 * 179.97438 * 28 10 9 53 53 H 1.09005 * 109.47382 * 179.97438 * 29 28 10 54 54 H 1.09000 * 109.47517 * 300.00246 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5852 3.4691 -0.8905 8 6 3.4486 3.6850 1.2486 9 6 4.0338 5.0987 1.2485 10 6 5.5617 5.0182 1.2495 11 9 6.0969 6.3108 1.2487 12 6 6.0322 4.2716 2.4993 13 16 5.3492 5.0739 3.9758 14 8 3.9411 4.8931 4.0354 15 8 5.9315 6.3570 4.1606 16 8 5.8837 4.2490 5.1379 17 6 7.1963 4.4676 5.4134 18 6 8.1721 3.7043 4.7918 19 6 9.5108 3.9339 5.0704 20 8 10.4700 3.1909 4.4583 21 6 10.0277 2.1939 3.5350 22 6 9.8700 4.9194 5.9785 23 6 11.3247 5.1657 6.2861 24 8 11.9328 5.8546 5.1918 25 14 11.4666 6.2016 7.8280 26 6 8.8953 5.6792 6.5971 27 6 7.5610 5.4558 6.3173 28 6 6.0338 4.2705 0.0008 29 6 5.4486 2.8569 0.0010 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.3601 3.7421 1.2481 36 1 3.7841 3.1535 2.1391 37 1 3.6972 5.6315 2.1377 38 1 3.6986 5.6306 0.3580 39 1 7.1210 4.2911 2.5459 40 1 5.6890 3.2379 2.4558 41 1 7.8902 2.9346 4.0884 42 1 9.4661 2.6679 2.7298 43 1 10.8913 1.6754 3.1187 44 1 9.3881 1.4783 4.0516 45 1 11.8298 4.2123 6.4411 46 1 11.5331 6.7132 4.9965 47 1 12.8964 6.4520 8.1418 48 1 10.7548 7.4912 7.6408 49 1 9.1772 6.4490 7.3001 50 1 6.8011 6.0511 6.8016 51 1 5.6987 4.8024 -0.8896 52 1 7.1224 4.2135 0.0013 53 1 5.7846 2.3243 -0.8888 54 1 5.7838 2.3250 0.8914 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_16464696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:37:01 Heat of formation + Delta-G solvation = -268.449389 kcal Electronic energy + Delta-G solvation = -43800.291785 eV Core-core repulsion = 38133.332739 eV Total energy + Delta-G solvation = -5666.959046 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -49.08685 -42.56243 -41.88266 -40.90734 -39.67701 -38.69141 -38.54266 -37.70744 -37.50783 -37.35141 -33.62814 -32.63491 -32.40742 -32.13066 -31.58003 -29.34099 -28.40201 -26.99396 -25.42296 -24.25179 -23.91899 -23.71135 -23.55198 -22.05393 -21.82537 -20.61468 -19.87046 -19.30448 -18.91879 -18.79501 -18.46766 -18.17778 -17.83410 -17.68559 -17.42437 -17.22162 -16.99484 -16.85110 -16.58812 -16.24171 -16.15317 -15.93142 -15.57411 -15.42834 -15.36108 -15.12718 -14.96260 -14.75034 -14.50638 -14.38691 -14.25010 -14.13566 -13.85665 -13.71102 -13.60953 -13.58172 -13.53323 -13.42462 -13.27942 -13.16101 -12.92273 -12.89138 -12.83185 -12.75660 -12.63986 -12.51824 -12.32229 -12.22311 -12.16743 -11.98460 -11.73023 -11.64533 -11.53628 -11.42552 -11.18778 -10.62188 -10.33148 -9.51277 -4.91078 -1.38189 -0.30213 0.03820 0.74940 1.05632 1.27965 1.59265 1.59366 1.96164 2.11054 2.15646 2.22778 2.60180 2.77543 3.03923 3.07235 3.27804 3.34425 3.40021 3.44136 3.52237 3.62129 3.62690 3.73745 3.78479 3.84798 3.91912 3.96931 3.99021 4.02777 4.12290 4.17752 4.18590 4.23288 4.26008 4.30808 4.31956 4.47843 4.49650 4.61068 4.64961 4.71996 4.73494 4.77081 4.80559 4.84394 4.88590 4.89861 4.92345 4.96406 4.98715 5.08192 5.12493 5.19065 5.34139 5.42877 6.13458 6.50598 6.62171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.534 6.534 6 C -0.082 4.082 7 H 0.141 0.859 8 C -0.109 4.109 9 C -0.175 4.175 10 C 0.134 3.866 11 F -0.206 7.206 12 C -0.682 4.682 13 S 2.588 3.412 14 O -0.940 6.940 15 O -0.962 6.962 16 O -0.664 6.664 17 C 0.087 3.913 18 C -0.226 4.226 19 C 0.168 3.832 20 O -0.309 6.309 21 C 0.004 3.996 22 C -0.135 4.135 23 C -0.075 4.075 24 O -0.542 6.542 25 Si 0.769 3.231 26 C -0.062 4.062 27 C -0.136 4.136 28 C -0.121 4.121 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.385 0.615 47 H -0.300 1.300 48 H -0.268 1.268 49 H 0.170 0.830 50 H 0.152 0.848 51 H 0.104 0.896 52 H 0.101 0.899 53 H 0.092 0.908 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -3.669 -1.564 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.310 3.690 5 O -0.424 6.424 6 C -0.101 4.101 7 H 0.158 0.842 8 C -0.146 4.146 9 C -0.213 4.213 10 C 0.114 3.886 11 F -0.186 7.186 12 C -0.810 4.810 13 S 2.686 3.314 14 O -0.938 6.938 15 O -0.961 6.961 16 O -0.623 6.623 17 C 0.046 3.954 18 C -0.246 4.246 19 C 0.120 3.880 20 O -0.222 6.222 21 C -0.090 4.090 22 C -0.137 4.137 23 C -0.184 4.184 24 O -0.350 6.350 25 Si 0.673 3.327 26 C -0.080 4.080 27 C -0.156 4.156 28 C -0.159 4.159 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.188 0.812 40 H 0.201 0.799 41 H 0.190 0.810 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.141 0.859 46 H 0.234 0.766 47 H -0.227 1.227 48 H -0.194 1.194 49 H 0.187 0.813 50 H 0.169 0.831 51 H 0.122 0.878 52 H 0.119 0.881 53 H 0.110 0.890 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.234 -3.437 -0.692 3.514 hybrid contribution -0.223 -0.095 -1.518 1.537 sum 0.012 -3.532 -2.210 4.166 Atomic orbital electron populations 1.21835 0.90928 1.04223 1.03714 1.23251 0.96800 0.79335 1.02556 1.86521 1.24347 1.33473 1.83372 1.24127 0.80630 0.93048 0.71222 1.90671 1.60978 1.44166 1.46574 1.21330 0.96926 0.88765 1.03075 0.84174 1.21517 1.03346 0.93538 0.96203 1.22676 0.92000 0.99660 1.06928 1.20667 0.94137 0.78372 0.95398 1.92974 1.87908 1.40190 1.97521 1.31611 1.16714 1.16422 1.16220 1.05626 0.75060 0.74543 0.76165 1.93637 1.29069 1.85786 1.85346 1.93654 1.78394 1.40868 1.83159 1.85711 1.32173 1.78260 1.66134 1.18022 0.76778 0.99208 1.01422 1.21553 0.91448 1.04587 1.07021 1.18550 0.86473 0.91055 0.91874 1.86227 1.32253 1.47675 1.56001 1.23557 1.03962 0.89809 0.91684 1.20063 0.97704 0.97215 0.98761 1.25175 0.89418 1.04482 0.99294 1.86626 1.60547 1.36788 1.51026 0.94088 0.78920 0.79602 0.80090 1.21145 0.90504 0.98140 0.98168 1.21436 0.98346 0.97473 0.98344 1.22060 1.03223 0.95096 0.95550 1.21540 0.91224 0.96436 1.05154 0.91198 0.88615 0.91404 0.91175 0.91387 0.88164 0.91222 0.90446 0.85954 0.81163 0.79867 0.80984 0.90908 0.86284 0.90862 0.85948 0.76550 1.22746 1.19444 0.81254 0.83060 0.87750 0.88050 0.88966 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.60 10.29 71.98 0.74 1.34 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.44 16 3 O -0.36 -0.68 10.12 -51.38 -0.52 -1.20 16 4 C 0.47 0.77 7.25 71.24 0.52 1.28 16 5 O -0.53 -3.67 15.73 21.95 0.35 -3.32 16 6 C -0.08 0.38 2.63 -11.54 -0.03 0.35 16 7 H 0.14 -1.25 8.14 -2.39 -0.02 -1.27 16 8 C -0.11 0.32 4.56 30.59 0.14 0.46 16 9 C -0.18 0.36 4.61 30.59 0.14 0.50 16 10 C 0.13 -0.31 1.11 -10.79 -0.01 -0.32 16 11 F -0.21 -0.72 16.37 44.97 0.74 0.02 16 12 C -0.68 2.37 4.07 71.98 0.29 2.66 16 13 S 2.59 12.94 4.41 -56.49 -0.25 12.69 16 14 O -0.94 -8.72 14.90 -118.57 -1.77 -10.49 16 15 O -0.96 -10.02 15.96 -118.57 -1.89 -11.92 16 16 O -0.66 -2.87 10.05 -61.47 -0.62 -3.49 16 17 C 0.09 0.27 4.79 22.49 0.11 0.38 16 18 C -0.23 0.22 7.44 22.46 0.17 0.39 16 19 C 0.17 0.08 6.66 22.49 0.15 0.23 16 20 O -0.31 -0.02 9.83 -92.39 -0.91 -0.93 16 21 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 22 C -0.14 0.01 5.27 -19.75 -0.10 -0.10 16 23 C -0.08 0.05 2.37 71.24 0.17 0.22 16 24 O -0.54 -1.42 12.88 -148.98 -1.92 -3.34 16 25 Si 0.77 -2.52 30.24 68.60 2.07 -0.45 16 26 C -0.06 0.06 8.65 22.24 0.19 0.26 16 27 C -0.14 -0.32 9.04 22.38 0.20 -0.12 16 28 C -0.12 0.89 5.19 30.60 0.16 1.05 16 29 C -0.11 0.69 4.22 30.59 0.13 0.81 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.10 -0.65 8.14 -2.38 -0.02 -0.67 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 34 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 35 H 0.10 -0.30 8.11 -2.39 -0.02 -0.32 16 36 H 0.07 -0.16 6.05 -2.39 -0.01 -0.17 16 37 H 0.08 0.15 5.40 -2.39 -0.01 0.14 16 38 H 0.12 -0.75 8.14 -2.38 -0.02 -0.77 16 39 H 0.17 -1.33 6.60 -2.39 -0.02 -1.34 16 40 H 0.18 -1.57 4.83 -2.39 -0.01 -1.58 16 41 H 0.17 -1.30 5.73 -2.91 -0.02 -1.31 16 42 H 0.07 -0.75 7.67 -2.38 -0.02 -0.77 16 43 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 44 H 0.07 -0.70 7.65 -2.39 -0.02 -0.72 16 45 H 0.12 -0.12 7.83 -2.39 -0.02 -0.14 16 46 H 0.39 -1.23 8.70 -74.06 -0.64 -1.87 16 47 H -0.30 -1.37 7.11 99.48 0.71 -0.67 16 48 H -0.27 0.30 6.68 99.48 0.66 0.97 16 49 H 0.17 -0.95 4.85 -2.91 -0.01 -0.97 16 50 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 51 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 52 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 53 H 0.09 -0.59 8.10 -2.38 -0.02 -0.61 16 54 H 0.08 -0.54 6.28 -2.39 -0.01 -0.56 16 Total: 0.00 -27.86 435.72 0.12 -27.74 By element: Atomic # 1 Polarization: -16.54 SS G_CDS: 0.32 Total: -16.23 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.52 Total: 10.91 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -7.28 Total: -34.68 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.74 Total: 0.02 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.07 Total: -0.45 kcal Atomic # 16 Polarization: 12.94 SS G_CDS: -0.25 Total: 12.69 kcal Total: -27.86 0.12 -27.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_16464696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.706 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds