Wall clock time and date at job start Mon Mar 8 2021 10:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46566 * 2 1 4 4 C 1.34232 * 116.99385 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00582 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99645 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47190 * 60.00696 * 6 4 3 8 8 C 1.53008 * 109.47116 * 180.02562 * 6 4 3 9 9 C 1.52993 * 109.47299 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47495 * 300.00507 * 9 8 6 11 11 F 1.39899 * 109.46586 * 299.99694 * 10 9 8 12 12 C 1.52999 * 109.47015 * 180.02562 * 10 9 8 13 13 S 1.81399 * 109.46810 * 184.99881 * 12 10 9 14 14 O 1.42100 * 110.54409 * 291.62399 * 13 12 10 15 15 O 1.42103 * 110.54456 * 68.37178 * 13 12 10 16 16 O 1.52200 * 104.44943 * 179.97438 * 13 12 10 17 17 C 1.35896 * 113.99884 * 74.99938 * 16 13 12 18 18 C 1.38612 * 120.02726 * 269.72232 * 17 16 13 19 19 C 1.38652 * 119.88853 * 179.77650 * 18 17 16 20 20 O 1.35901 * 120.02626 * 180.27593 * 19 18 17 21 21 C 1.42898 * 116.99876 * 0.27227 * 20 19 18 22 22 C 1.38753 * 119.94922 * 0.54384 * 19 18 17 23 23 C 1.50697 * 119.97522 * 179.70521 * 22 19 18 24 24 O 1.42896 * 109.46935 * 74.97830 * 23 22 19 25 25 Si 1.86302 * 109.46950 * 194.98161 * 23 22 19 26 26 C 1.38199 * 120.05080 * 359.68588 * 22 19 18 27 27 C 1.38159 * 120.10923 * 0.04636 * 26 22 19 28 28 C 1.52999 * 109.46977 * 59.99790 * 10 9 8 29 29 C 1.52994 * 109.47588 * 300.00227 * 6 4 3 30 30 H 1.08997 * 109.47417 * 299.99711 * 1 2 3 31 31 H 1.09001 * 109.47413 * 60.00069 * 1 2 3 32 32 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47039 * 239.99986 * 2 1 3 34 34 H 1.09002 * 109.46975 * 119.99624 * 2 1 3 35 35 H 1.09000 * 109.46680 * 60.00191 * 8 6 4 36 36 H 1.09000 * 109.46973 * 300.00797 * 8 6 4 37 37 H 1.08999 * 109.47626 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47115 * 60.00438 * 9 8 6 39 39 H 1.09000 * 109.47486 * 64.99912 * 12 10 9 40 40 H 1.09001 * 109.47362 * 304.99190 * 12 10 9 41 41 H 1.07999 * 120.05278 * 0.02585 * 18 17 16 42 42 H 1.09002 * 109.47099 * 180.02562 * 21 20 19 43 43 H 1.09003 * 109.47016 * 299.99932 * 21 20 19 44 44 H 1.08997 * 109.47618 * 59.99766 * 21 20 19 45 45 H 1.09000 * 109.46964 * 314.97965 * 23 22 19 46 46 H 0.96710 * 114.00050 * 60.00346 * 24 23 22 47 47 H 1.48493 * 110.00215 * 58.68063 * 25 23 22 48 48 H 1.48505 * 109.99594 * 180.02562 * 25 23 22 49 49 H 1.08000 * 119.94571 * 180.02562 * 26 22 19 50 50 H 1.07999 * 119.97117 * 179.97438 * 27 26 22 51 51 H 1.08996 * 109.47443 * 60.00090 * 28 10 9 52 52 H 1.09000 * 109.46961 * 180.02562 * 28 10 9 53 53 H 1.09000 * 109.47237 * 300.00440 * 29 6 4 54 54 H 1.09002 * 109.46700 * 60.00280 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5843 3.4701 0.8896 8 6 5.4485 2.8575 0.0001 9 6 6.0333 4.2712 0.0002 10 6 5.5618 5.0184 -1.2490 11 9 5.9931 4.3354 -2.3912 12 6 6.1471 6.4319 -1.2491 13 16 5.4718 7.3658 -2.6500 14 8 5.9588 6.8436 -3.8786 15 8 4.0866 7.6188 -2.4593 16 8 6.1220 8.7376 -2.5407 17 6 7.4247 8.7642 -2.9266 18 6 8.4279 8.5337 -1.9983 19 6 9.7560 8.5569 -2.3961 20 8 10.7416 8.3257 -1.4895 21 6 10.3370 8.0596 -0.1451 22 6 10.0781 8.8218 -3.7195 23 6 11.5216 8.8538 -4.1511 24 8 12.0253 7.5188 -4.2281 25 14 11.6518 9.6642 -5.8235 26 6 9.0762 9.0561 -4.6421 27 6 7.7520 9.0280 -4.2493 28 6 4.0339 5.0984 -1.2490 29 6 3.4496 3.6837 -1.2498 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7845 2.3250 -0.8897 36 1 5.7844 2.3256 0.8903 37 1 7.1218 4.2143 0.0008 38 1 5.6973 4.8033 0.8902 39 1 7.2320 6.3760 -1.3389 40 1 5.8849 6.9339 -0.3178 41 1 8.1754 8.3323 -0.9678 42 1 11.2189 7.8937 0.4737 43 1 9.7775 8.9116 0.2413 44 1 9.7059 7.1711 -0.1246 45 1 12.1052 9.4210 -3.4260 46 1 11.5522 6.9554 -4.8559 47 1 11.1019 11.0423 -5.7644 48 1 13.0706 9.7013 -6.2608 49 1 9.3289 9.2617 -5.6718 50 1 6.9708 9.2118 -4.9721 51 1 3.6978 5.6304 -0.3590 52 1 3.6979 5.6302 -2.1392 53 1 3.7859 3.1511 -2.1394 54 1 2.3611 3.7408 -1.2503 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:37:06 Heat of formation + Delta-G solvation = -275.153002 kcal Electronic energy + Delta-G solvation = -42926.422923 eV Core-core repulsion = 37259.173187 eV Total energy + Delta-G solvation = -5667.249736 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -49.05990 -42.50454 -41.78709 -40.86174 -39.11384 -38.62622 -38.46911 -37.67923 -37.41507 -37.22415 -34.25066 -32.66008 -32.44682 -32.08519 -31.54124 -29.12061 -28.37919 -26.95438 -25.12881 -24.24190 -23.86538 -23.69046 -23.34267 -22.00199 -21.70692 -20.86111 -19.91210 -19.17149 -18.95171 -18.78619 -18.34823 -17.92002 -17.79364 -17.70866 -17.29247 -17.15256 -16.98933 -16.70145 -16.59213 -16.32372 -16.12843 -15.72666 -15.52182 -15.32493 -15.25717 -15.03324 -14.87482 -14.68231 -14.52614 -14.30846 -14.16335 -14.02616 -13.79277 -13.72249 -13.63339 -13.48400 -13.46430 -13.34453 -13.20300 -13.18763 -13.11463 -12.92331 -12.79787 -12.62945 -12.56656 -12.46720 -12.26520 -12.18988 -12.10815 -11.94988 -11.93710 -11.73973 -11.56641 -11.35969 -11.12466 -10.44270 -10.27477 -9.48156 -4.99594 -1.30624 -0.25171 0.07095 0.82560 1.06386 1.28545 1.59957 1.65853 1.98340 2.14200 2.19425 2.30928 2.68614 2.82567 3.08799 3.27338 3.33922 3.40815 3.48677 3.51864 3.57693 3.66567 3.71498 3.78724 3.82230 3.89660 3.95526 4.01887 4.02903 4.04058 4.14468 4.21382 4.25833 4.28545 4.30311 4.30809 4.34796 4.47529 4.53580 4.61314 4.66753 4.71859 4.78808 4.79576 4.79919 4.88093 4.89121 4.93826 4.96144 4.99950 5.01817 5.08728 5.12629 5.24670 5.38398 5.42534 6.16315 6.62967 6.79542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.147 0.853 8 C -0.110 4.110 9 C -0.122 4.122 10 C 0.127 3.873 11 F -0.210 7.210 12 C -0.669 4.669 13 S 2.586 3.414 14 O -0.963 6.963 15 O -0.946 6.946 16 O -0.663 6.663 17 C 0.088 3.912 18 C -0.224 4.224 19 C 0.163 3.837 20 O -0.314 6.314 21 C 0.004 3.996 22 C -0.145 4.145 23 C -0.065 4.065 24 O -0.550 6.550 25 Si 0.774 3.226 26 C -0.054 4.054 27 C -0.138 4.138 28 C -0.177 4.177 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.168 0.832 40 H 0.204 0.796 41 H 0.178 0.822 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.394 0.606 47 H -0.279 1.279 48 H -0.296 1.296 49 H 0.178 0.822 50 H 0.154 0.846 51 H 0.135 0.865 52 H 0.076 0.924 53 H 0.060 0.940 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 1.429 4.773 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.096 4.096 7 H 0.165 0.835 8 C -0.148 4.148 9 C -0.160 4.160 10 C 0.107 3.893 11 F -0.191 7.191 12 C -0.798 4.798 13 S 2.685 3.315 14 O -0.962 6.962 15 O -0.944 6.944 16 O -0.622 6.622 17 C 0.046 3.954 18 C -0.245 4.245 19 C 0.116 3.884 20 O -0.227 6.227 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.174 4.174 24 O -0.358 6.358 25 Si 0.678 3.322 26 C -0.071 4.071 27 C -0.158 4.158 28 C -0.214 4.214 29 C -0.148 4.148 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.145 0.855 39 H 0.186 0.814 40 H 0.222 0.778 41 H 0.195 0.805 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.244 0.756 47 H -0.205 1.205 48 H -0.224 1.224 49 H 0.195 0.805 50 H 0.172 0.828 51 H 0.153 0.847 52 H 0.095 0.905 53 H 0.079 0.921 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.008 2.316 4.201 4.797 hybrid contribution -0.009 -0.600 1.056 1.215 sum -0.016 1.715 5.257 5.530 Atomic orbital electron populations 1.21823 0.90639 1.04250 1.03794 1.23246 0.96957 0.79408 1.02393 1.86514 1.24223 1.33395 1.83450 1.24261 0.80595 0.93260 0.71066 1.90674 1.61134 1.44456 1.46672 1.21294 0.96577 0.88566 1.03164 0.83518 1.21466 0.91697 0.97623 1.03973 1.22158 1.03135 0.94503 0.96223 1.20788 0.94852 0.88097 0.85514 1.92948 1.91306 1.81665 1.53170 1.31474 1.15798 1.08612 1.23898 1.05651 0.74893 0.73745 0.77211 1.93654 1.80665 1.79319 1.42523 1.93636 1.30820 1.82639 1.87348 1.85711 1.31775 1.57745 1.86991 1.18006 0.77373 1.05848 0.94129 1.21562 0.91054 1.09935 1.01936 1.18589 0.86461 0.93634 0.89729 1.86226 1.31953 1.84326 1.20187 1.23562 1.04370 1.02143 0.78936 1.20188 0.97805 1.04997 0.91690 1.25108 0.90531 0.90205 1.11596 1.86520 1.59919 1.21697 1.67655 0.93965 0.80300 0.79914 0.78006 1.21040 0.90144 0.95783 1.00181 1.21489 0.98690 1.01040 0.94572 1.22809 0.92210 0.99153 1.07271 1.21470 1.02840 0.94170 0.96271 0.91032 0.91341 0.88631 0.91755 0.91254 0.92447 0.89432 0.88205 0.85481 0.81367 0.77832 0.80489 0.86551 0.90879 0.90412 0.87759 0.75592 1.20526 1.22415 0.80481 0.82812 0.84682 0.90542 0.92102 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.23 10.12 -51.43 -0.52 -1.75 16 4 C 0.46 2.04 7.26 71.24 0.52 2.56 16 5 O -0.54 -5.97 15.73 21.96 0.35 -5.62 16 6 C -0.08 0.21 2.63 -11.54 -0.03 0.18 16 7 H 0.15 -1.35 8.14 -2.39 -0.02 -1.37 16 8 C -0.11 0.29 4.37 30.59 0.13 0.42 16 9 C -0.12 1.03 5.00 30.59 0.15 1.18 16 10 C 0.13 -0.45 0.89 -10.79 -0.01 -0.46 16 11 F -0.21 -0.90 15.33 44.97 0.69 -0.21 16 12 C -0.67 5.03 4.79 71.98 0.34 5.37 16 13 S 2.59 6.63 4.41 -56.49 -0.25 6.38 16 14 O -0.96 -8.27 15.96 -118.57 -1.89 -10.16 16 15 O -0.95 -7.15 15.64 -118.57 -1.85 -9.00 16 16 O -0.66 -1.31 10.05 -61.47 -0.62 -1.93 16 17 C 0.09 0.12 4.79 22.49 0.11 0.22 16 18 C -0.22 0.60 7.45 22.46 0.17 0.77 16 19 C 0.16 -0.02 6.66 22.49 0.15 0.13 16 20 O -0.31 0.05 9.82 -92.43 -0.91 -0.86 16 21 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 22 C -0.14 0.07 5.27 -19.75 -0.10 -0.03 16 23 C -0.06 0.04 2.37 71.24 0.17 0.21 16 24 O -0.55 -0.30 12.88 -148.98 -1.92 -2.22 16 25 Si 0.77 -2.45 29.91 68.60 2.05 -0.40 16 26 C -0.05 0.14 8.65 22.24 0.19 0.33 16 27 C -0.14 -0.12 9.05 22.38 0.20 0.09 16 28 C -0.18 0.53 4.32 30.61 0.13 0.67 16 29 C -0.11 0.17 5.01 30.61 0.15 0.32 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 34 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 35 H 0.06 0.17 7.76 -2.39 -0.02 0.15 16 36 H 0.09 -0.26 8.10 -2.39 -0.02 -0.28 16 37 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.13 -1.94 8.14 -2.39 -0.02 -1.96 16 39 H 0.17 -1.86 6.63 -2.39 -0.02 -1.88 16 40 H 0.20 -3.44 8.14 -2.39 -0.02 -3.46 16 41 H 0.18 -1.83 5.76 -2.91 -0.02 -1.85 16 42 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 43 H 0.07 -0.81 7.65 -2.39 -0.02 -0.83 16 44 H 0.08 -0.96 7.67 -2.39 -0.02 -0.98 16 45 H 0.10 0.18 7.83 -2.39 -0.02 0.16 16 46 H 0.39 -3.00 8.70 -74.05 -0.64 -3.65 16 47 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 48 H -0.30 -1.35 7.11 99.48 0.71 -0.64 16 49 H 0.18 -1.62 5.12 -2.91 -0.01 -1.64 16 50 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 51 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 52 H 0.08 0.09 5.40 -2.39 -0.01 0.08 16 53 H 0.06 0.14 7.80 -2.39 -0.02 0.13 16 54 H 0.10 -0.30 8.11 -2.39 -0.02 -0.32 16 Total: 0.00 -33.59 443.00 0.04 -33.54 By element: Atomic # 1 Polarization: -22.88 SS G_CDS: 0.34 Total: -22.54 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.58 Total: 14.78 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -7.37 Total: -31.55 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.69 Total: -0.21 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.05 Total: -0.40 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -0.25 Total: 6.38 kcal Total: -33.59 0.04 -33.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.610 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds