Wall clock time and date at job start Mon Mar 8 2021 10:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.85304 * 309.67271 * 6 4 3 8 8 C 1.53786 * 113.61013 * 80.86628 * 6 4 3 9 9 C 1.53958 * 87.01676 * 139.94932 * 8 6 4 10 10 F 1.39903 * 113.61012 * 89.19864 * 9 8 6 11 11 C 1.52997 * 113.66730 * 220.06693 * 9 8 6 12 12 S 1.81400 * 109.46948 * 282.56062 * 11 9 8 13 13 O 1.42100 * 110.54358 * 291.62440 * 12 11 9 14 14 O 1.42102 * 110.54496 * 68.37315 * 12 11 9 15 15 O 1.52201 * 104.45042 * 180.02562 * 12 11 9 16 16 C 1.35896 * 114.00422 * 75.00063 * 15 12 11 17 17 C 1.38606 * 120.02750 * 90.00149 * 16 15 12 18 18 C 1.38664 * 119.88755 * 179.97438 * 17 16 15 19 19 O 1.35899 * 120.02329 * 180.02562 * 18 17 16 20 20 C 1.42894 * 117.00312 * 359.97438 * 19 18 17 21 21 C 1.38750 * 119.94459 * 359.97438 * 18 17 16 22 22 C 1.50705 * 119.97010 * 180.02562 * 21 18 17 23 23 O 1.42902 * 109.47150 * 74.99393 * 22 21 18 24 24 Si 1.86297 * 109.46953 * 195.00017 * 22 21 18 25 25 C 1.38192 * 120.05598 * 359.97438 * 21 18 17 26 26 C 1.38155 * 120.11140 * 359.78593 * 25 21 18 27 27 C 1.53777 * 87.11420 * 334.63793 * 9 8 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 33 33 H 1.08998 * 113.61535 * 254.52409 * 8 6 4 34 34 H 1.08996 * 113.61870 * 25.43566 * 8 6 4 35 35 H 1.08996 * 109.47252 * 42.55985 * 11 9 8 36 36 H 1.08997 * 109.47364 * 162.56314 * 11 9 8 37 37 H 1.07995 * 120.06026 * 359.95623 * 17 16 15 38 38 H 1.09004 * 109.47579 * 300.00180 * 20 19 18 39 39 H 1.09002 * 109.47022 * 59.99951 * 20 19 18 40 40 H 1.08995 * 109.47445 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46938 * 314.99766 * 22 21 18 42 42 H 0.96709 * 113.99355 * 59.99926 * 23 22 21 43 43 H 1.48494 * 110.00041 * 58.67936 * 24 22 21 44 44 H 1.48497 * 109.99991 * 180.02562 * 24 22 21 45 45 H 1.07997 * 119.94322 * 180.02562 * 25 21 18 46 46 H 1.07991 * 119.97630 * 180.25539 * 26 25 21 47 47 H 1.08999 * 113.61494 * 270.81323 * 27 9 8 48 48 H 1.08999 * 113.61769 * 139.91089 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4904 3.5732 -0.7737 8 6 3.9488 3.5929 1.3909 9 6 5.3314 4.1531 1.0104 10 9 5.2758 5.3973 0.3731 11 6 6.3452 4.1169 2.1557 12 16 6.0032 5.4748 3.3089 13 8 6.2869 6.7279 2.7018 14 8 4.7770 5.2525 3.9916 15 8 7.0661 5.3326 4.3890 16 6 8.3039 5.7401 4.0037 17 6 8.6909 7.0574 4.1940 18 6 9.9548 7.4700 3.8003 19 8 10.3373 8.7607 3.9861 20 6 9.3865 9.6383 4.5924 21 6 10.8289 6.5637 3.2175 22 6 12.2030 7.0113 2.7898 23 8 13.0328 7.1688 3.9425 24 14 12.9482 5.7330 1.6579 25 6 10.4411 5.2506 3.0298 26 6 9.1841 4.8359 3.4257 27 6 5.4578 2.9682 0.0383 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1878 4.3612 1.5269 34 1 3.9790 2.8757 2.2111 35 1 6.2658 3.1653 2.6813 36 1 7.3522 4.2269 1.7533 37 1 8.0092 7.7613 4.6479 38 1 8.4894 9.6847 3.9749 39 1 9.1269 9.2644 5.5828 40 1 9.8176 10.6354 4.6816 41 1 12.1276 7.9629 2.2636 42 1 13.1445 6.3597 4.4602 43 1 12.0781 5.5370 0.4706 44 1 14.3037 6.1624 1.2296 45 1 11.1230 4.5466 2.5763 46 1 8.8848 3.8083 3.2818 47 1 5.9013 2.0799 0.4880 48 1 5.9131 3.2330 -0.9160 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:40:42 Heat of formation + Delta-G solvation = -234.618281 kcal Electronic energy + Delta-G solvation = -37652.226109 eV Core-core repulsion = 32297.809328 eV Total energy + Delta-G solvation = -5354.416781 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.22147 -42.53758 -41.83711 -40.88857 -39.42777 -38.67288 -38.39683 -37.49788 -37.37067 -37.22116 -32.92824 -32.52672 -32.24594 -31.51736 -28.55808 -27.47352 -27.02552 -26.98389 -24.19286 -23.80947 -23.65289 -22.33969 -21.75099 -20.97024 -19.97337 -19.27671 -19.17155 -18.79491 -18.43070 -17.94825 -17.68128 -17.67407 -17.54317 -17.13983 -17.06242 -16.69094 -16.39369 -16.33635 -16.04358 -15.79807 -15.60281 -15.47704 -15.38780 -14.81620 -14.70710 -14.61752 -14.40961 -14.31641 -14.11501 -13.84676 -13.82764 -13.79184 -13.45416 -13.35507 -13.23886 -13.17560 -13.03324 -13.01629 -12.90747 -12.69795 -12.62835 -12.54425 -12.32085 -12.16771 -12.02021 -11.95555 -11.59152 -11.57072 -11.42922 -10.49935 -10.30623 -9.56615 -5.14390 -1.32977 -0.27588 -0.05340 0.81219 1.02268 1.18269 1.50242 1.56026 1.91957 2.03740 2.12733 2.26275 2.48899 2.58716 2.63717 2.87607 3.02571 3.04560 3.30054 3.34079 3.44677 3.51849 3.63203 3.69096 3.72994 3.83548 3.88162 3.91683 3.94180 4.06869 4.11656 4.14296 4.15847 4.18955 4.23579 4.24420 4.40260 4.47716 4.50848 4.53241 4.60910 4.66461 4.74076 4.76145 4.80724 4.86351 4.90340 4.97940 5.27278 5.37141 6.07458 6.54616 6.62638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.475 3.525 5 O -0.503 6.503 6 C -0.109 4.109 7 H 0.138 0.862 8 C -0.147 4.147 9 C 0.102 3.898 10 F -0.170 7.170 11 C -0.673 4.673 12 S 2.593 3.407 13 O -0.931 6.931 14 O -0.912 6.912 15 O -0.660 6.660 16 C 0.108 3.892 17 C -0.182 4.182 18 C 0.176 3.824 19 O -0.295 6.295 20 C 0.017 3.983 21 C -0.137 4.137 22 C -0.059 4.059 23 O -0.531 6.531 24 Si 0.682 3.318 25 C -0.058 4.058 26 C -0.167 4.167 27 C -0.120 4.120 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.377 0.623 43 H -0.252 1.252 44 H -0.250 1.250 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.122 0.878 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.949 -4.030 0.152 4.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.128 4.128 7 H 0.156 0.844 8 C -0.185 4.185 9 C 0.083 3.917 10 F -0.150 7.150 11 C -0.798 4.798 12 S 2.687 3.313 13 O -0.929 6.929 14 O -0.910 6.910 15 O -0.619 6.619 16 C 0.067 3.933 17 C -0.203 4.203 18 C 0.129 3.871 19 O -0.207 6.207 20 C -0.078 4.078 21 C -0.139 4.139 22 C -0.170 4.170 23 O -0.336 6.336 24 Si 0.583 3.417 25 C -0.075 4.075 26 C -0.187 4.187 27 C -0.158 4.158 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.224 0.776 43 H -0.177 1.177 44 H -0.175 1.175 45 H 0.170 0.830 46 H 0.167 0.833 47 H 0.140 0.860 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.287 -3.286 -0.442 3.556 hybrid contribution -0.712 -0.066 -0.152 0.731 sum 0.575 -3.352 -0.594 3.452 Atomic orbital electron populations 1.21829 0.92191 1.03347 1.03788 1.23129 0.95750 0.79584 1.02837 1.86522 1.23999 1.32992 1.83473 1.23208 0.80913 0.91796 0.72297 1.90689 1.60546 1.42710 1.45064 1.22476 0.97174 0.92038 1.01088 0.84388 1.23852 0.95977 1.01885 0.96764 1.21211 0.95593 0.82429 0.92504 1.93016 1.97078 1.42055 1.82823 1.31353 1.10156 1.24061 1.14242 1.05653 0.74656 0.76315 0.74705 1.93692 1.82990 1.38284 1.77940 1.93680 1.40590 1.86418 1.70317 1.85757 1.29071 1.85965 1.61093 1.17734 0.81521 0.93011 1.01034 1.21386 0.97391 0.95955 1.05539 1.18512 0.90722 0.84868 0.92993 1.86209 1.41990 1.16518 1.75965 1.23293 0.93201 0.93690 0.97626 1.20006 0.97713 0.92882 1.03315 1.25001 0.87878 1.08974 0.95138 1.86587 1.68462 1.38818 1.39753 0.95232 0.80626 0.85315 0.80533 1.20691 0.95265 0.94148 0.97413 1.21191 0.94500 1.00068 1.02920 1.23577 0.93846 0.97530 1.00880 0.89917 0.91256 0.91304 0.90980 0.90968 0.87149 0.86429 0.81965 0.82737 0.83267 0.91747 0.92065 0.87303 0.86378 0.77624 1.17691 1.17492 0.83020 0.83341 0.86007 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 10.29 37.16 0.38 0.68 16 2 C 0.06 -0.01 6.19 37.16 0.23 0.22 16 3 O -0.35 -0.40 10.22 -39.26 -0.40 -0.80 16 4 C 0.48 0.53 7.48 36.01 0.27 0.80 16 5 O -0.50 -1.71 15.66 -18.75 -0.29 -2.00 16 6 C -0.11 0.13 4.23 -90.95 -0.39 -0.26 16 7 H 0.14 -0.35 8.14 -51.93 -0.42 -0.77 16 8 C -0.15 0.18 6.92 -25.82 -0.18 0.00 16 9 C 0.10 -0.10 1.57 -89.72 -0.14 -0.24 16 10 F -0.17 -0.24 16.51 2.25 0.04 -0.21 16 11 C -0.67 1.65 5.13 37.16 0.19 1.84 16 12 S 2.59 3.93 4.92 -107.50 -0.53 3.40 16 13 O -0.93 -3.75 15.81 -67.04 -1.06 -4.81 16 14 O -0.91 -3.74 17.96 -67.03 -1.20 -4.94 16 15 O -0.66 -0.73 10.05 -51.74 -0.52 -1.25 16 16 C 0.11 0.08 4.79 -39.24 -0.19 -0.11 16 17 C -0.18 -0.28 8.03 -39.29 -0.32 -0.59 16 18 C 0.18 0.25 6.66 -39.24 -0.26 -0.01 16 19 O -0.29 -0.54 9.82 -19.42 -0.19 -0.73 16 20 C 0.02 -0.02 9.81 101.05 0.99 0.98 16 21 C -0.14 0.04 5.27 -104.45 -0.55 -0.51 16 22 C -0.06 0.03 2.37 36.01 0.09 0.11 16 23 O -0.53 -0.02 12.88 -35.23 -0.45 -0.48 16 24 Si 0.68 -1.49 29.91 -169.99 -5.09 -6.58 16 25 C -0.06 0.15 8.65 -39.63 -0.34 -0.19 16 26 C -0.17 0.36 8.46 -39.40 -0.33 0.02 16 27 C -0.12 0.23 6.85 -25.92 -0.18 0.06 16 28 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 31 H 0.07 -0.02 8.13 -51.93 -0.42 -0.45 16 32 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 33 H 0.11 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.12 -0.28 7.99 -51.93 -0.42 -0.69 16 35 H 0.16 -0.91 8.06 -51.93 -0.42 -1.33 16 36 H 0.15 -0.71 6.63 -51.93 -0.34 -1.06 16 37 H 0.15 0.10 6.30 -52.49 -0.33 -0.23 16 38 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 39 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 40 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.12 0.09 7.82 -51.93 -0.41 -0.31 16 42 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 43 H -0.25 0.02 7.11 56.52 0.40 0.42 16 44 H -0.25 -0.34 7.11 56.52 0.40 0.07 16 45 H 0.15 -0.91 5.12 -52.49 -0.27 -1.18 16 46 H 0.15 -0.84 7.53 -52.49 -0.40 -1.24 16 47 H 0.12 -0.30 7.41 -51.93 -0.38 -0.69 16 48 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 414.82 15.07 6.25 6.25 Total: 0.00 -12.70 414.82 -10.54 -23.24 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: -6.36 Total: -13.89 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.72 Total: 2.80 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -4.12 Total: -15.01 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.21 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.09 Total: -6.58 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -0.53 Total: 3.40 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -12.70 -10.54 -23.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.383 kcal (2) G-P(sol) polarization free energy of solvation -12.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds