Wall clock time and date at job start Mon Mar 8 2021 10:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.85304 * 309.67271 * 6 4 3 8 8 C 1.53786 * 113.61013 * 80.86628 * 6 4 3 9 9 C 1.53958 * 87.01676 * 139.94932 * 8 6 4 10 10 F 1.39903 * 113.61012 * 89.19864 * 9 8 6 11 11 C 1.52997 * 113.66730 * 220.06693 * 9 8 6 12 12 S 1.81400 * 109.46948 * 282.56062 * 11 9 8 13 13 O 1.42100 * 110.54358 * 291.62440 * 12 11 9 14 14 O 1.42102 * 110.54496 * 68.37315 * 12 11 9 15 15 O 1.52201 * 104.45042 * 180.02562 * 12 11 9 16 16 C 1.35896 * 114.00422 * 75.00063 * 15 12 11 17 17 C 1.38606 * 120.02750 * 90.00149 * 16 15 12 18 18 C 1.38664 * 119.88755 * 179.97438 * 17 16 15 19 19 O 1.35899 * 120.02329 * 180.02562 * 18 17 16 20 20 C 1.42894 * 117.00312 * 359.97438 * 19 18 17 21 21 C 1.38750 * 119.94459 * 359.97438 * 18 17 16 22 22 C 1.50705 * 119.97010 * 180.02562 * 21 18 17 23 23 O 1.42902 * 109.47150 * 74.99393 * 22 21 18 24 24 Si 1.86297 * 109.46953 * 195.00017 * 22 21 18 25 25 C 1.38192 * 120.05598 * 359.97438 * 21 18 17 26 26 C 1.38155 * 120.11140 * 359.78593 * 25 21 18 27 27 C 1.53777 * 87.11420 * 334.63793 * 9 8 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 33 33 H 1.08998 * 113.61535 * 254.52409 * 8 6 4 34 34 H 1.08996 * 113.61870 * 25.43566 * 8 6 4 35 35 H 1.08996 * 109.47252 * 42.55985 * 11 9 8 36 36 H 1.08997 * 109.47364 * 162.56314 * 11 9 8 37 37 H 1.07995 * 120.06026 * 359.95623 * 17 16 15 38 38 H 1.09004 * 109.47579 * 300.00180 * 20 19 18 39 39 H 1.09002 * 109.47022 * 59.99951 * 20 19 18 40 40 H 1.08995 * 109.47445 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46938 * 314.99766 * 22 21 18 42 42 H 0.96709 * 113.99355 * 59.99926 * 23 22 21 43 43 H 1.48494 * 110.00041 * 58.67936 * 24 22 21 44 44 H 1.48497 * 109.99991 * 180.02562 * 24 22 21 45 45 H 1.07997 * 119.94322 * 180.02562 * 25 21 18 46 46 H 1.07991 * 119.97630 * 180.25539 * 26 25 21 47 47 H 1.08999 * 113.61494 * 270.81323 * 27 9 8 48 48 H 1.08999 * 113.61769 * 139.91089 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4904 3.5732 -0.7737 8 6 3.9488 3.5929 1.3909 9 6 5.3314 4.1531 1.0104 10 9 5.2758 5.3973 0.3731 11 6 6.3452 4.1169 2.1557 12 16 6.0032 5.4748 3.3089 13 8 6.2869 6.7279 2.7018 14 8 4.7770 5.2525 3.9916 15 8 7.0661 5.3326 4.3890 16 6 8.3039 5.7401 4.0037 17 6 8.6909 7.0574 4.1940 18 6 9.9548 7.4700 3.8003 19 8 10.3373 8.7607 3.9861 20 6 9.3865 9.6383 4.5924 21 6 10.8289 6.5637 3.2175 22 6 12.2030 7.0113 2.7898 23 8 13.0328 7.1688 3.9425 24 14 12.9482 5.7330 1.6579 25 6 10.4411 5.2506 3.0298 26 6 9.1841 4.8359 3.4257 27 6 5.4578 2.9682 0.0383 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1878 4.3612 1.5269 34 1 3.9790 2.8757 2.2111 35 1 6.2658 3.1653 2.6813 36 1 7.3522 4.2269 1.7533 37 1 8.0092 7.7613 4.6479 38 1 8.4894 9.6847 3.9749 39 1 9.1269 9.2644 5.5828 40 1 9.8176 10.6354 4.6816 41 1 12.1276 7.9629 2.2636 42 1 13.1445 6.3597 4.4602 43 1 12.0781 5.5370 0.4706 44 1 14.3037 6.1624 1.2296 45 1 11.1230 4.5466 2.5763 46 1 8.8848 3.8083 3.2818 47 1 5.9013 2.0799 0.4880 48 1 5.9131 3.2330 -0.9160 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:40:40 Heat of formation + Delta-G solvation = -238.223674 kcal Electronic energy + Delta-G solvation = -37652.382450 eV Core-core repulsion = 32297.809328 eV Total energy + Delta-G solvation = -5354.573122 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.19917 -42.50188 -41.85714 -40.87284 -39.34581 -38.63309 -38.53039 -37.55878 -37.45749 -37.22188 -32.84158 -32.46661 -32.13015 -31.41711 -28.50610 -27.30609 -26.97466 -26.91319 -24.11085 -23.72066 -23.61145 -22.32483 -21.72628 -20.86748 -19.98411 -19.28524 -19.18985 -18.79502 -18.41176 -17.95207 -17.67784 -17.63394 -17.46924 -17.09467 -16.99401 -16.67786 -16.34891 -16.30170 -16.03728 -15.75216 -15.54255 -15.43249 -15.29519 -14.73871 -14.66337 -14.53490 -14.38104 -14.23274 -14.11760 -13.72158 -13.69971 -13.66212 -13.52466 -13.47671 -13.35387 -13.09224 -12.97002 -12.92817 -12.83970 -12.61865 -12.53643 -12.45681 -12.28073 -12.12014 -11.94945 -11.87221 -11.57764 -11.50060 -11.41110 -10.42174 -10.23727 -9.51679 -4.98768 -1.34789 -0.22968 0.04939 0.80723 0.98543 1.30815 1.55511 1.70697 2.04852 2.11410 2.20236 2.28532 2.63570 2.64801 2.76624 2.92193 3.16048 3.20566 3.38216 3.48367 3.58084 3.69144 3.75222 3.81186 3.84666 3.94024 3.97020 4.02629 4.10156 4.17790 4.21338 4.25725 4.31571 4.34322 4.37058 4.43808 4.49134 4.59085 4.62867 4.72088 4.75664 4.81045 4.81798 4.88580 4.90979 5.01385 5.02990 5.12040 5.39873 5.41411 6.09927 6.59018 6.83563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.477 3.523 5 O -0.527 6.527 6 C -0.110 4.110 7 H 0.148 0.852 8 C -0.156 4.156 9 C 0.092 3.908 10 F -0.187 7.187 11 C -0.654 4.654 12 S 2.585 3.415 13 O -0.969 6.969 14 O -0.951 6.951 15 O -0.662 6.662 16 C 0.086 3.914 17 C -0.205 4.205 18 C 0.152 3.848 19 O -0.316 6.316 20 C 0.012 3.988 21 C -0.144 4.144 22 C -0.077 4.077 23 O -0.553 6.553 24 Si 0.797 3.203 25 C -0.049 4.049 26 C -0.154 4.154 27 C -0.110 4.110 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.203 0.797 36 H 0.185 0.815 37 H 0.140 0.860 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.395 0.605 43 H -0.272 1.272 44 H -0.303 1.303 45 H 0.193 0.807 46 H 0.194 0.806 47 H 0.134 0.866 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -6.803 -0.556 7.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.321 3.679 5 O -0.417 6.417 6 C -0.129 4.129 7 H 0.165 0.835 8 C -0.193 4.193 9 C 0.073 3.927 10 F -0.168 7.168 11 C -0.782 4.782 12 S 2.684 3.316 13 O -0.967 6.967 14 O -0.949 6.949 15 O -0.621 6.621 16 C 0.044 3.956 17 C -0.226 4.226 18 C 0.106 3.894 19 O -0.229 6.229 20 C -0.082 4.082 21 C -0.146 4.146 22 C -0.185 4.185 23 O -0.361 6.361 24 Si 0.701 3.299 25 C -0.066 4.066 26 C -0.174 4.174 27 C -0.148 4.148 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.220 0.780 36 H 0.203 0.797 37 H 0.158 0.842 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.245 0.755 43 H -0.198 1.198 44 H -0.231 1.231 45 H 0.210 0.790 46 H 0.211 0.789 47 H 0.152 0.848 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.107 -6.011 -1.079 6.461 hybrid contribution -0.956 0.810 0.055 1.255 sum 1.150 -5.201 -1.024 5.425 Atomic orbital electron populations 1.21840 0.91014 1.04282 1.03643 1.23287 0.96754 0.79105 1.02811 1.86534 1.24259 1.33776 1.83292 1.23614 0.80661 0.92330 0.71337 1.90669 1.60931 1.43669 1.46387 1.22595 0.98029 0.90813 1.01467 0.83471 1.23984 0.96060 1.02089 0.97173 1.21420 0.96071 0.82074 0.93178 1.92988 1.97177 1.43342 1.83244 1.31264 1.11383 1.23205 1.12395 1.05607 0.74070 0.76950 0.74933 1.93646 1.83248 1.41341 1.78488 1.93627 1.42544 1.87094 1.71675 1.85724 1.29306 1.85857 1.61217 1.18099 0.81804 0.93389 1.02291 1.21481 0.97627 0.96859 1.06612 1.18806 0.91324 0.85030 0.94287 1.86165 1.42966 1.17239 1.76552 1.23419 0.92977 0.94090 0.97735 1.20276 0.97436 0.93792 1.03066 1.25343 0.88301 1.09219 0.95623 1.86540 1.68505 1.40690 1.40353 0.94056 0.75764 0.82717 0.77377 1.21153 0.95677 0.93540 0.96214 1.21729 0.93645 1.01462 1.00550 1.23602 0.93043 0.97078 1.01092 0.88455 0.91382 0.91413 0.91094 0.90926 0.87608 0.85231 0.78009 0.79741 0.84195 0.92132 0.91499 0.85977 0.88704 0.75518 1.19814 1.23122 0.79003 0.78865 0.84804 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.62 10.29 71.98 0.74 1.37 16 2 C 0.05 -0.03 6.19 71.98 0.45 0.42 16 3 O -0.36 -0.80 10.22 -51.42 -0.53 -1.33 16 4 C 0.48 0.79 7.48 71.24 0.53 1.32 16 5 O -0.53 -3.15 15.66 21.97 0.34 -2.81 16 6 C -0.11 0.36 4.23 -11.01 -0.05 0.31 16 7 H 0.15 -0.81 8.14 -2.39 -0.02 -0.83 16 8 C -0.16 0.48 6.92 31.18 0.22 0.70 16 9 C 0.09 -0.31 1.57 -10.21 -0.02 -0.32 16 10 F -0.19 -0.52 16.51 44.97 0.74 0.22 16 11 C -0.65 4.78 5.13 71.98 0.37 5.15 16 12 S 2.59 8.96 4.92 -56.49 -0.28 8.68 16 13 O -0.97 -9.59 15.81 -118.57 -1.87 -11.47 16 14 O -0.95 -9.10 17.96 -118.57 -2.13 -11.23 16 15 O -0.66 -1.59 10.05 -61.47 -0.62 -2.21 16 16 C 0.09 0.11 4.79 22.49 0.11 0.22 16 17 C -0.20 -0.98 8.03 22.46 0.18 -0.80 16 18 C 0.15 0.67 6.66 22.49 0.15 0.82 16 19 O -0.32 -1.95 9.82 -92.41 -0.91 -2.86 16 20 C 0.01 0.01 9.81 113.37 1.11 1.12 16 21 C -0.14 0.11 5.27 -19.75 -0.10 0.01 16 22 C -0.08 0.06 2.37 71.24 0.17 0.23 16 23 O -0.55 -0.26 12.88 -148.98 -1.92 -2.18 16 24 Si 0.80 -4.66 29.91 68.60 2.05 -2.61 16 25 C -0.05 0.38 8.65 22.24 0.19 0.57 16 26 C -0.15 1.09 8.46 22.38 0.19 1.28 16 27 C -0.11 0.67 6.85 31.12 0.21 0.89 16 28 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 32 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 33 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.13 -0.76 7.99 -2.39 -0.02 -0.78 16 35 H 0.20 -3.10 8.06 -2.39 -0.02 -3.12 16 36 H 0.18 -2.44 6.63 -2.39 -0.02 -2.45 16 37 H 0.14 0.69 6.30 -2.91 -0.02 0.67 16 38 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 39 H 0.07 -0.08 7.66 -2.39 -0.02 -0.09 16 40 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.10 0.32 7.82 -2.38 -0.02 0.30 16 42 H 0.39 -3.61 8.70 -74.05 -0.64 -4.25 16 43 H -0.27 0.67 7.11 99.48 0.71 1.37 16 44 H -0.30 -0.89 7.11 99.48 0.71 -0.18 16 45 H 0.19 -3.17 5.12 -2.91 -0.01 -3.18 16 46 H 0.19 -3.22 7.53 -2.92 -0.02 -3.25 16 47 H 0.13 -1.10 7.41 -2.39 -0.02 -1.11 16 48 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: 0.00 -34.08 414.82 -0.25 -34.33 By element: Atomic # 1 Polarization: -20.23 SS G_CDS: 0.41 Total: -19.82 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.45 Total: 13.27 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -7.63 Total: -34.08 kcal Atomic # 9 Polarization: -0.52 SS G_CDS: 0.74 Total: 0.22 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.05 Total: -2.61 kcal Atomic # 16 Polarization: 8.96 SS G_CDS: -0.28 Total: 8.68 kcal Total: -34.08 -0.25 -34.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.894 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds