Wall clock time and date at job start Mon Mar 8 2021 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00589 * 2 1 4 4 C 1.38740 * 120.03328 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.97407 * 0.02562 * 4 3 2 6 6 O 1.42897 * 109.47027 * 74.97757 * 5 4 3 7 7 Si 1.86299 * 109.47496 * 194.98025 * 5 4 3 8 8 C 1.38196 * 120.05609 * 180.02562 * 4 3 2 9 9 C 1.38156 * 120.11232 * 359.97438 * 8 4 3 10 10 C 1.38790 * 120.04871 * 0.04567 * 9 8 4 11 11 O 1.35900 * 120.02848 * 179.97438 * 10 9 8 12 12 S 1.52203 * 114.00214 * 89.99829 * 11 10 9 13 13 O 1.42103 * 104.27616 * 318.93263 * 12 11 10 14 14 O 1.42097 * 104.27829 * 191.07576 * 12 11 10 15 15 C 1.81400 * 104.44698 * 75.00215 * 12 11 10 16 16 C 1.53001 * 109.46768 * 180.02562 * 15 12 11 17 17 H 1.08999 * 112.91236 * 43.75113 * 16 15 12 18 18 C 1.53777 * 113.61307 * 175.00288 * 16 15 12 19 19 C 1.53787 * 87.08360 * 89.11409 * 18 16 15 20 20 O 1.42901 * 113.61417 * 270.80280 * 19 18 16 21 21 C 1.42905 * 113.99684 * 294.81739 * 20 19 18 22 22 C 1.52997 * 113.61536 * 139.98201 * 19 18 16 23 23 F 1.39900 * 109.46970 * 54.75702 * 22 19 18 24 24 F 1.39894 * 109.47087 * 174.76152 * 22 19 18 25 25 F 1.39905 * 109.47131 * 294.76412 * 22 19 18 26 26 C 1.53783 * 113.61368 * 272.49851 * 16 15 12 27 27 C 1.38616 * 119.95111 * 0.23219 * 10 9 8 28 28 H 1.08989 * 109.46961 * 59.99800 * 1 2 3 29 29 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47049 * 299.99956 * 1 2 3 31 31 H 1.09003 * 109.46959 * 314.98376 * 5 4 3 32 32 H 0.96701 * 114.00107 * 179.97438 * 6 5 4 33 33 H 1.48496 * 110.00160 * 178.68281 * 7 5 4 34 34 H 1.48499 * 109.99759 * 300.00136 * 7 5 4 35 35 H 1.08002 * 119.94329 * 180.02562 * 8 4 3 36 36 H 1.07996 * 119.97497 * 180.02562 * 9 8 4 37 37 H 1.08997 * 109.46930 * 60.00389 * 15 12 11 38 38 H 1.08999 * 109.47205 * 300.00232 * 15 12 11 39 39 H 1.08999 * 113.61591 * 203.66531 * 18 16 15 40 40 H 1.09004 * 113.61406 * 334.48074 * 18 16 15 41 41 H 1.09003 * 109.47186 * 302.48311 * 21 20 19 42 42 H 1.08999 * 109.46890 * 62.48167 * 21 20 19 43 43 H 1.08997 * 109.46981 * 182.48213 * 21 20 19 44 44 H 1.08997 * 113.61399 * 25.43178 * 26 16 15 45 45 H 1.08994 * 113.61486 * 156.33686 * 26 16 15 46 46 H 1.08002 * 120.05723 * 179.74773 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.2523 0.0202 -0.0017 6 8 4.2184 -0.5686 -1.3033 7 14 6.0138 0.4231 0.4518 8 6 4.0595 2.5151 0.0000 9 6 3.3099 3.6756 0.0005 10 6 1.9237 3.6076 0.0015 11 8 1.1868 4.7494 0.0025 12 16 0.8501 5.2702 -1.3874 13 8 2.0467 5.0840 -2.1308 14 8 0.3257 6.5706 -1.1568 15 6 -0.4506 4.1562 -1.9854 16 6 -0.8789 4.5806 -3.3916 17 1 -0.0348 4.8245 -4.0367 18 6 -1.8945 3.6257 -4.0407 19 6 -2.9952 4.4800 -3.3899 20 8 -3.3550 4.0464 -2.0766 21 6 -3.9599 2.7523 -2.0373 22 6 -4.2086 4.7084 -4.2934 23 9 -4.7077 3.4746 -4.7245 24 9 -5.2004 5.3889 -3.5792 25 9 -3.8270 5.4703 -5.4030 26 6 -1.9900 5.6437 -3.4026 27 6 1.2914 2.3741 0.0068 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8413 -0.6806 0.7249 32 1 4.7271 -1.3876 -1.3779 33 1 6.8266 -0.8192 0.4852 34 1 6.5856 1.3779 -0.5313 35 1 5.1382 2.5700 -0.0008 36 1 3.8030 4.6364 0.0005 37 1 -1.3078 4.2050 -1.3139 38 1 -0.0696 3.1353 -2.0146 39 1 -1.8973 3.6659 -5.1300 40 1 -1.8448 2.6074 -3.6549 41 1 -4.8474 2.7466 -2.6702 42 1 -3.2504 2.0084 -2.3997 43 1 -4.2434 2.5148 -1.0119 44 1 -2.0183 6.2550 -2.5005 45 1 -2.0188 6.2357 -4.3173 46 1 0.2128 2.3191 0.0117 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:14:29 Heat of formation + Delta-G solvation = -289.458776 kcal Electronic energy + Delta-G solvation = -40506.280340 eV Core-core repulsion = 34657.485879 eV Total energy + Delta-G solvation = -5848.794462 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.098 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -51.28835 -48.82222 -48.75514 -42.46486 -41.49704 -40.80040 -38.57111 -38.44556 -37.44164 -37.41850 -37.27837 -32.67648 -31.90805 -31.42382 -28.48243 -28.33475 -27.85488 -26.92356 -26.83332 -23.95607 -23.77048 -23.27660 -21.81905 -20.78678 -20.09525 -19.73862 -19.58708 -19.31929 -18.99750 -18.67794 -18.54544 -17.87690 -17.37298 -17.27863 -17.11559 -16.70104 -16.51103 -16.38004 -15.88124 -15.82383 -15.70375 -15.63437 -15.44262 -15.39606 -15.30809 -15.17088 -14.94053 -14.90723 -14.71091 -14.38587 -14.29623 -14.19015 -14.07842 -13.77910 -13.51387 -13.47042 -13.32964 -13.30144 -13.19652 -12.98572 -12.84248 -12.70748 -12.36721 -12.24884 -12.18949 -12.13487 -12.05476 -11.81611 -11.47197 -10.84921 -10.44631 -10.26486 -9.45834 -4.90212 -1.23462 -0.22868 0.09328 0.86646 1.29381 1.49244 1.61767 1.95070 2.04284 2.16421 2.19079 2.38151 2.51274 2.57277 2.76984 2.81126 3.07468 3.22836 3.27461 3.29800 3.47241 3.49060 3.59293 3.70137 3.80715 3.94952 3.98550 4.16165 4.17710 4.26984 4.29565 4.31976 4.36409 4.39981 4.44209 4.47297 4.52280 4.63565 4.69862 4.72443 4.74726 4.80531 4.82281 4.86973 4.97549 5.06945 5.39072 5.68146 6.17652 6.62341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.310 6.310 3 C 0.167 3.833 4 C -0.101 4.101 5 C -0.076 4.076 6 O -0.552 6.552 7 Si 0.761 3.239 8 C -0.063 4.063 9 C -0.137 4.137 10 C 0.092 3.908 11 O -0.665 6.665 12 S 2.591 3.409 13 O -0.970 6.970 14 O -0.957 6.957 15 C -0.623 4.623 16 C -0.098 4.098 17 H 0.122 0.878 18 C -0.127 4.127 19 C 0.040 3.960 20 O -0.344 6.344 21 C -0.001 4.001 22 C 0.432 3.568 23 F -0.182 7.182 24 F -0.187 7.187 25 F -0.177 7.177 26 C -0.138 4.138 27 C -0.221 4.221 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.395 0.605 33 H -0.284 1.284 34 H -0.286 1.286 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.134 0.866 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -7.832 2.807 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.223 6.223 3 C 0.120 3.880 4 C -0.103 4.103 5 C -0.185 4.185 6 O -0.362 6.362 7 Si 0.665 3.335 8 C -0.081 4.081 9 C -0.157 4.157 10 C 0.050 3.950 11 O -0.624 6.624 12 S 2.690 3.310 13 O -0.969 6.969 14 O -0.955 6.955 15 C -0.752 4.752 16 C -0.117 4.117 17 H 0.140 0.860 18 C -0.165 4.165 19 C -0.003 4.003 20 O -0.262 6.262 21 C -0.096 4.096 22 C 0.378 3.622 23 F -0.163 7.163 24 F -0.169 7.169 25 F -0.158 7.158 26 C -0.175 4.175 27 C -0.242 4.242 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.245 0.755 33 H -0.210 1.210 34 H -0.213 1.213 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.118 0.882 45 H 0.152 0.848 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.000 -6.760 2.824 7.395 hybrid contribution -1.514 -0.886 -1.276 2.169 sum -0.514 -7.646 1.549 7.819 Atomic orbital electron populations 1.23563 0.76104 1.06326 1.02986 1.86192 1.23573 1.24999 1.87528 1.18494 0.91303 0.84400 0.93755 1.19111 0.91215 0.95061 1.04914 1.24848 1.10612 0.94706 0.88305 1.86552 1.75039 1.44622 1.30005 0.94176 0.71790 0.79666 0.87826 1.21055 1.01365 0.89784 0.95894 1.21390 0.91771 1.01088 1.01486 1.17956 0.89793 0.81207 1.05996 1.85715 1.72890 1.46462 1.57330 1.05491 0.76552 0.75927 0.73000 1.93643 1.44331 1.86583 1.72321 1.93615 1.81846 1.37163 1.82906 1.30685 1.19350 1.17802 1.07409 1.21814 0.99139 0.97526 0.93242 0.85990 1.23644 0.90212 0.99983 1.02672 1.24042 0.88655 1.02286 0.85294 1.88042 1.79707 1.36470 1.21961 1.23381 0.97757 0.83194 1.05287 1.21495 0.86082 0.74060 0.80584 1.93180 1.89237 1.43153 1.90778 1.93193 1.65013 1.80578 1.78089 1.93176 1.90937 1.76387 1.55325 1.23636 0.91310 0.95433 1.07133 1.21541 1.02824 0.89746 1.10046 0.90830 0.86209 0.90820 0.88901 0.75492 1.21049 1.21350 0.81993 0.83161 0.81342 0.81495 0.85769 0.86484 0.93751 0.90502 0.86516 0.88235 0.84832 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.31 0.58 9.82 -92.42 -0.91 -0.33 16 3 C 0.17 -0.04 6.66 22.49 0.15 0.11 16 4 C -0.10 -0.08 5.31 -19.75 -0.10 -0.18 16 5 C -0.08 0.13 2.36 71.24 0.17 0.30 16 6 O -0.55 -0.48 12.86 -148.98 -1.92 -2.39 16 7 Si 0.76 -2.91 30.19 68.60 2.07 -0.83 16 8 C -0.06 -0.03 8.65 22.24 0.19 0.16 16 9 C -0.14 -0.38 9.05 22.38 0.20 -0.17 16 10 C 0.09 0.22 4.79 22.49 0.11 0.33 16 11 O -0.66 -2.44 10.05 -61.51 -0.62 -3.06 16 12 S 2.59 9.67 5.16 -56.49 -0.29 9.37 16 13 O -0.97 -8.03 16.26 -118.57 -1.93 -9.96 16 14 O -0.96 -10.34 18.09 -118.57 -2.15 -12.48 16 15 C -0.62 3.32 5.05 71.98 0.36 3.68 16 16 C -0.10 0.49 3.84 -10.27 -0.04 0.46 16 17 H 0.12 -0.85 8.13 -2.39 -0.02 -0.87 16 18 C -0.13 0.93 6.52 31.12 0.20 1.13 16 19 C 0.04 -0.09 0.85 -10.27 -0.01 -0.10 16 20 O -0.34 0.83 8.36 -148.98 -1.25 -0.42 16 21 C 0.00 0.01 10.43 113.37 1.18 1.19 16 22 C 0.43 0.65 2.51 71.98 0.18 0.83 16 23 F -0.18 -0.24 15.24 44.97 0.69 0.45 16 24 F -0.19 -1.08 17.09 44.97 0.77 -0.31 16 25 F -0.18 -0.35 15.82 44.97 0.71 0.36 16 26 C -0.14 0.30 6.89 31.12 0.21 0.52 16 27 C -0.22 0.48 7.45 22.46 0.17 0.65 16 28 H 0.07 -0.97 7.67 -2.39 -0.02 -0.98 16 29 H 0.12 -1.48 8.14 -2.39 -0.02 -1.50 16 30 H 0.07 -0.89 7.65 -2.39 -0.02 -0.91 16 31 H 0.09 -0.41 7.82 -2.39 -0.02 -0.43 16 32 H 0.39 -2.73 8.74 -74.06 -0.65 -3.38 16 33 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 34 H -0.29 -0.60 6.75 99.48 0.67 0.08 16 35 H 0.16 -0.50 4.89 -2.91 -0.01 -0.51 16 36 H 0.15 0.18 8.06 -2.91 -0.02 0.15 16 37 H 0.17 -1.24 6.13 -2.39 -0.01 -1.25 16 38 H 0.17 -1.80 6.62 -2.39 -0.02 -1.81 16 39 H 0.12 -1.12 8.06 -2.39 -0.02 -1.14 16 40 H 0.12 -1.32 6.70 -2.38 -0.02 -1.34 16 41 H 0.04 -0.19 6.25 -2.39 -0.01 -0.20 16 42 H 0.08 -0.89 6.76 -2.39 -0.02 -0.91 16 43 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 44 H 0.10 -0.01 8.10 -2.39 -0.02 -0.03 16 45 H 0.13 -0.58 7.01 -2.39 -0.02 -0.60 16 46 H 0.18 -1.65 5.76 -2.91 -0.02 -1.67 16 Total: 0.00 -27.27 393.60 -0.29 -27.56 By element: Atomic # 1 Polarization: -18.35 SS G_CDS: 0.43 Total: -17.92 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.09 Total: 9.97 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -8.76 Total: -28.64 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 2.17 Total: 0.49 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.07 Total: -0.83 kcal Atomic # 16 Polarization: 9.67 SS G_CDS: -0.29 Total: 9.37 kcal Total: -27.27 -0.29 -27.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -261.897 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds