Wall clock time and date at job start Mon Mar 8 2021 11:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00044 * 2 1 4 4 C 1.38755 * 120.02667 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97041 * 359.70867 * 4 3 2 6 6 O 1.42893 * 109.47405 * 75.00215 * 5 4 3 7 7 Si 1.86304 * 109.46683 * 194.99983 * 5 4 3 8 8 C 1.38195 * 120.05111 * 179.72977 * 4 3 2 9 9 C 1.38152 * 120.11104 * 359.97436 * 8 4 3 10 10 C 1.38789 * 120.05663 * 0.05185 * 9 8 4 11 11 O 1.35892 * 120.02776 * 179.97438 * 10 9 8 12 12 S 1.52198 * 114.00067 * 90.00030 * 11 10 9 13 13 O 1.42099 * 104.28021 * 191.07271 * 12 11 10 14 14 O 1.42101 * 104.27623 * 318.92654 * 12 11 10 15 15 C 1.81395 * 104.45245 * 74.99693 * 12 11 10 16 16 H 1.08999 * 112.84834 * 53.80685 * 15 12 11 17 17 C 1.53781 * 113.61626 * 185.00171 * 15 12 11 18 18 C 1.53773 * 87.08158 * 89.11702 * 17 15 12 19 19 H 1.09000 * 113.61837 * 270.80026 * 18 17 15 20 20 C 1.50697 * 113.61559 * 139.98256 * 18 17 15 21 21 C 1.38236 * 120.00011 * 299.72796 * 20 18 17 22 22 C 1.38240 * 120.00086 * 179.76686 * 21 20 18 23 23 C 1.38235 * 120.00038 * 0.50410 * 22 21 20 24 24 C 1.38242 * 119.99730 * 359.74759 * 23 22 21 25 25 C 1.38235 * 120.00250 * 119.99892 * 20 18 17 26 26 C 1.53776 * 87.08356 * 25.43340 * 18 17 15 27 27 C 1.38611 * 119.94447 * 359.95084 * 10 9 8 28 28 H 1.08996 * 109.47014 * 60.00044 * 1 2 3 29 29 H 1.08998 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46914 * 299.99692 * 1 2 3 31 31 H 1.09000 * 109.47052 * 314.99495 * 5 4 3 32 32 H 0.96697 * 114.00544 * 59.99087 * 6 5 4 33 33 H 1.48500 * 110.00180 * 58.68153 * 7 5 4 34 34 H 1.48501 * 109.99911 * 180.02562 * 7 5 4 35 35 H 1.07999 * 119.93794 * 180.02562 * 8 4 3 36 36 H 1.07999 * 119.96849 * 180.02562 * 9 8 4 37 37 H 1.09007 * 113.61621 * 203.66645 * 17 15 12 38 38 H 1.09008 * 113.61538 * 334.56722 * 17 15 12 39 39 H 1.07997 * 120.00113 * 359.97438 * 21 20 18 40 40 H 1.08001 * 120.00190 * 180.23165 * 22 21 20 41 41 H 1.08001 * 120.00148 * 179.72474 * 23 22 21 42 42 H 1.08001 * 119.99722 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00149 * 0.02562 * 25 20 18 44 44 H 1.09003 * 113.61767 * 220.01950 * 26 18 17 45 45 H 1.08998 * 113.61723 * 89.11123 * 26 18 17 46 46 H 1.07999 * 120.05521 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4316 1.2841 0.0005 5 6 4.2523 0.0202 0.0078 6 8 4.2202 -0.5760 -1.2904 7 14 6.0131 0.4259 0.4614 8 6 4.0595 2.5152 -0.0051 9 6 3.3099 3.6756 -0.0118 10 6 1.9236 3.6076 -0.0118 11 8 1.1868 4.7494 -0.0179 12 16 0.8515 5.2624 -1.4111 13 8 0.3269 6.5641 -1.1884 14 8 2.0489 5.0720 -2.1522 15 6 -0.4486 4.1450 -2.0042 16 1 -1.2908 4.0726 -1.3161 17 6 -0.8646 4.4028 -3.4620 18 6 0.2428 3.4170 -3.8699 19 1 1.2127 3.8895 -4.0250 20 6 -0.1500 2.5022 -5.0011 21 6 -1.2278 1.6486 -4.8574 22 6 -1.5911 0.8128 -5.8969 23 6 -0.8702 0.8232 -7.0764 24 6 0.2109 1.6731 -7.2182 25 6 0.5709 2.5125 -6.1806 26 6 0.0805 2.7814 -2.4790 27 6 1.2914 2.3741 -0.0061 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8403 -0.6764 0.7379 32 1 4.5725 -0.0110 -1.9916 33 1 6.0570 1.0756 1.7960 34 1 6.8331 -0.8122 0.4715 35 1 5.1381 2.5700 -0.0051 36 1 3.8030 4.6364 -0.0166 37 1 -1.8696 4.0526 -3.6978 38 1 -0.6830 5.4252 -3.7937 39 1 -1.7881 1.6370 -3.9342 40 1 -2.4354 0.1486 -5.7860 41 1 -1.1512 0.1671 -7.8869 42 1 0.7744 1.6809 -8.1395 43 1 1.4159 3.1759 -6.2912 44 1 1.0252 2.4946 -2.0170 45 1 -0.6660 1.9879 -2.4459 46 1 0.2128 2.3191 -0.0066 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:11 Heat of formation + Delta-G solvation = -70.933054 kcal Electronic energy + Delta-G solvation = -34199.759867 eV Core-core repulsion = 29730.118568 eV Total energy + Delta-G solvation = -4469.641299 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.61296 -41.25158 -40.87271 -39.04818 -38.68053 -38.23921 -37.31819 -37.19322 -32.67237 -32.26802 -31.84956 -31.63019 -28.74890 -27.23310 -27.03720 -26.89856 -24.02851 -23.82340 -23.55125 -22.97978 -21.80895 -21.01863 -19.84443 -18.96935 -18.73015 -18.39406 -18.23888 -17.76161 -17.25856 -17.09852 -16.68510 -16.61075 -16.36755 -16.00544 -15.79974 -15.68401 -15.43237 -15.28130 -15.03155 -14.65546 -14.51000 -14.31056 -14.24209 -14.12481 -13.97198 -13.74056 -13.56655 -13.32713 -13.30470 -13.25505 -13.18899 -12.92316 -12.70776 -12.55510 -12.35034 -12.21088 -12.05587 -11.96776 -11.91255 -11.60648 -11.45348 -10.48107 -10.19565 -9.87373 -9.65930 -9.50142 -5.08981 -1.19355 -0.25796 0.02010 0.35122 0.44773 0.90084 1.21337 1.59866 1.94154 1.98663 2.14122 2.36701 2.56401 2.75255 2.93374 3.15579 3.29884 3.37587 3.43039 3.52593 3.58440 3.61884 3.72197 3.79381 3.88212 3.95661 3.97360 3.99847 4.04727 4.13074 4.17240 4.24061 4.28052 4.34287 4.37970 4.42931 4.49577 4.51563 4.55880 4.66984 4.68689 4.73624 4.90683 4.96349 4.96843 5.03021 5.10027 5.31514 5.51183 5.58832 5.64284 6.02760 6.03838 6.56724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.293 6.293 3 C 0.170 3.830 4 C -0.134 4.134 5 C -0.058 4.058 6 O -0.532 6.532 7 Si 0.681 3.319 8 C -0.060 4.060 9 C -0.117 4.117 10 C 0.107 3.893 11 O -0.661 6.661 12 S 2.611 3.389 13 O -0.920 6.920 14 O -0.938 6.938 15 C -0.660 4.660 16 H 0.150 0.850 17 C -0.086 4.086 18 C -0.088 4.088 19 H 0.123 0.877 20 C -0.071 4.071 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.105 4.105 27 C -0.217 4.217 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.378 0.622 33 H -0.253 1.253 34 H -0.251 1.251 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -2.661 -1.665 3.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.205 6.205 3 C 0.123 3.877 4 C -0.136 4.136 5 C -0.168 4.168 6 O -0.336 6.336 7 Si 0.582 3.418 8 C -0.078 4.078 9 C -0.137 4.137 10 C 0.066 3.934 11 O -0.620 6.620 12 S 2.705 3.295 13 O -0.918 6.918 14 O -0.936 6.936 15 C -0.766 4.766 16 H 0.168 0.832 17 C -0.124 4.124 18 C -0.107 4.107 19 H 0.141 0.859 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.238 4.238 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.225 0.775 33 H -0.178 1.178 34 H -0.175 1.175 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.122 0.878 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.187 -2.838 -0.557 2.898 hybrid contribution -1.853 -0.212 0.200 1.876 sum -1.666 -3.050 -0.357 3.494 Atomic orbital electron populations 1.23278 0.77895 1.05038 1.01614 1.86241 1.21580 1.25107 1.87573 1.18384 0.91240 0.83888 0.94208 1.20010 0.91538 0.96605 1.05447 1.24965 1.08482 0.93697 0.89705 1.86569 1.86917 1.44205 1.15957 0.95056 0.76598 0.84465 0.85657 1.20763 0.99961 0.90063 0.97005 1.21193 0.91202 1.00648 1.00694 1.17671 0.89555 0.80793 1.05388 1.85726 1.72741 1.46038 1.57462 1.05080 0.76030 0.75293 0.73119 1.93669 1.81555 1.34077 1.82532 1.93652 1.42018 1.86132 1.71815 1.32581 1.20133 1.14470 1.09447 0.83243 1.22649 1.01098 1.00614 0.88033 1.21924 1.00386 0.95903 0.92438 0.85930 1.19502 0.95952 0.96978 0.94671 1.20971 0.97149 0.96558 0.98994 1.21155 0.99815 0.99029 0.93558 1.21225 0.95810 0.99073 0.97802 1.21214 0.97204 0.96017 0.98946 1.21127 0.99702 0.99158 0.92950 1.23163 1.02538 0.92909 0.95646 1.21343 1.01631 0.90986 1.09832 0.92238 0.87365 0.92203 0.86502 0.77527 1.17767 1.17512 0.83090 0.83272 0.87386 0.89917 0.86272 0.86018 0.85984 0.85809 0.85694 0.88951 0.87842 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.29 -0.06 9.82 -19.42 -0.19 -0.25 16 3 C 0.17 0.01 6.52 -39.24 -0.26 -0.25 16 4 C -0.13 0.06 5.27 -104.45 -0.55 -0.49 16 5 C -0.06 0.03 2.37 36.01 0.09 0.12 16 6 O -0.53 0.02 12.88 -35.23 -0.45 -0.43 16 7 Si 0.68 -1.22 29.91 -169.99 -5.08 -6.30 16 8 C -0.06 0.09 8.65 -39.63 -0.34 -0.25 16 9 C -0.12 0.01 9.04 -39.41 -0.36 -0.35 16 10 C 0.11 0.08 4.34 -39.24 -0.17 -0.09 16 11 O -0.66 -1.05 10.05 -51.73 -0.52 -1.57 16 12 S 2.61 4.10 5.07 -107.50 -0.55 3.55 16 13 O -0.92 -4.84 18.09 -67.04 -1.21 -6.05 16 14 O -0.94 -2.32 14.53 -67.04 -0.97 -3.29 16 15 C -0.66 1.12 4.13 -25.92 -0.11 1.01 16 16 H 0.15 -0.59 8.14 -51.93 -0.42 -1.01 16 17 C -0.09 0.13 7.15 -25.92 -0.19 -0.05 16 18 C -0.09 0.08 3.59 -90.97 -0.33 -0.25 16 19 H 0.12 -0.06 6.84 -51.93 -0.36 -0.42 16 20 C -0.07 0.00 5.29 -104.63 -0.55 -0.55 16 21 C -0.12 0.06 8.63 -39.58 -0.34 -0.28 16 22 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 23 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 24 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 25 C -0.11 -0.03 9.71 -39.58 -0.38 -0.41 16 26 C -0.11 0.21 5.06 -25.92 -0.13 0.08 16 27 C -0.22 0.13 5.21 -39.29 -0.20 -0.08 16 28 H 0.06 -0.26 6.60 -51.93 -0.34 -0.60 16 29 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 30 H 0.06 -0.24 7.67 -51.93 -0.40 -0.63 16 31 H 0.12 0.05 7.83 -51.93 -0.41 -0.36 16 32 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 33 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 34 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 35 H 0.15 -0.68 5.12 -52.49 -0.27 -0.95 16 36 H 0.15 -0.19 8.06 -52.49 -0.42 -0.62 16 37 H 0.11 -0.28 7.73 -51.93 -0.40 -0.68 16 38 H 0.08 -0.15 8.10 -51.92 -0.42 -0.57 16 39 H 0.12 -0.29 6.64 -52.49 -0.35 -0.63 16 40 H 0.12 -0.22 8.06 -52.49 -0.42 -0.65 16 41 H 0.12 -0.18 8.06 -52.49 -0.42 -0.61 16 42 H 0.12 -0.18 8.06 -52.49 -0.42 -0.61 16 43 H 0.13 -0.13 8.05 -52.49 -0.42 -0.55 16 44 H 0.09 -0.15 4.56 -51.93 -0.24 -0.39 16 45 H 0.10 -0.37 5.48 -51.93 -0.28 -0.65 16 46 H 0.15 -0.43 5.39 -52.49 -0.28 -0.71 16 LS Contribution 376.70 15.07 5.68 5.68 Total: 0.00 -10.23 376.70 -12.84 -23.07 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -5.51 Total: -12.33 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.03 Total: -2.06 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -3.35 Total: -11.60 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.30 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -0.55 Total: 3.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.23 -12.84 -23.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.864 kcal (2) G-P(sol) polarization free energy of solvation -10.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds