Wall clock time and date at job start Mon Mar 8 2021 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00044 * 2 1 4 4 C 1.38755 * 120.02667 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97041 * 359.70867 * 4 3 2 6 6 O 1.42893 * 109.47405 * 75.00215 * 5 4 3 7 7 Si 1.86304 * 109.46683 * 194.99983 * 5 4 3 8 8 C 1.38195 * 120.05111 * 179.72977 * 4 3 2 9 9 C 1.38152 * 120.11104 * 359.97436 * 8 4 3 10 10 C 1.38789 * 120.05663 * 0.05185 * 9 8 4 11 11 O 1.35892 * 120.02776 * 179.97438 * 10 9 8 12 12 S 1.52198 * 114.00067 * 90.00030 * 11 10 9 13 13 O 1.42099 * 104.28021 * 191.07271 * 12 11 10 14 14 O 1.42101 * 104.27623 * 318.92654 * 12 11 10 15 15 C 1.81395 * 104.45245 * 74.99693 * 12 11 10 16 16 H 1.08999 * 112.84834 * 53.80685 * 15 12 11 17 17 C 1.53781 * 113.61626 * 185.00171 * 15 12 11 18 18 C 1.53773 * 87.08158 * 89.11702 * 17 15 12 19 19 H 1.09000 * 113.61837 * 270.80026 * 18 17 15 20 20 C 1.50697 * 113.61559 * 139.98256 * 18 17 15 21 21 C 1.38236 * 120.00011 * 299.72796 * 20 18 17 22 22 C 1.38240 * 120.00086 * 179.76686 * 21 20 18 23 23 C 1.38235 * 120.00038 * 0.50410 * 22 21 20 24 24 C 1.38242 * 119.99730 * 359.74759 * 23 22 21 25 25 C 1.38235 * 120.00250 * 119.99892 * 20 18 17 26 26 C 1.53776 * 87.08356 * 25.43340 * 18 17 15 27 27 C 1.38611 * 119.94447 * 359.95084 * 10 9 8 28 28 H 1.08996 * 109.47014 * 60.00044 * 1 2 3 29 29 H 1.08998 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46914 * 299.99692 * 1 2 3 31 31 H 1.09000 * 109.47052 * 314.99495 * 5 4 3 32 32 H 0.96697 * 114.00544 * 59.99087 * 6 5 4 33 33 H 1.48500 * 110.00180 * 58.68153 * 7 5 4 34 34 H 1.48501 * 109.99911 * 180.02562 * 7 5 4 35 35 H 1.07999 * 119.93794 * 180.02562 * 8 4 3 36 36 H 1.07999 * 119.96849 * 180.02562 * 9 8 4 37 37 H 1.09007 * 113.61621 * 203.66645 * 17 15 12 38 38 H 1.09008 * 113.61538 * 334.56722 * 17 15 12 39 39 H 1.07997 * 120.00113 * 359.97438 * 21 20 18 40 40 H 1.08001 * 120.00190 * 180.23165 * 22 21 20 41 41 H 1.08001 * 120.00148 * 179.72474 * 23 22 21 42 42 H 1.08001 * 119.99722 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00149 * 0.02562 * 25 20 18 44 44 H 1.09003 * 113.61767 * 220.01950 * 26 18 17 45 45 H 1.08998 * 113.61723 * 89.11123 * 26 18 17 46 46 H 1.07999 * 120.05521 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4316 1.2841 0.0005 5 6 4.2523 0.0202 0.0078 6 8 4.2202 -0.5760 -1.2904 7 14 6.0131 0.4259 0.4614 8 6 4.0595 2.5152 -0.0051 9 6 3.3099 3.6756 -0.0118 10 6 1.9236 3.6076 -0.0118 11 8 1.1868 4.7494 -0.0179 12 16 0.8515 5.2624 -1.4111 13 8 0.3269 6.5641 -1.1884 14 8 2.0489 5.0720 -2.1522 15 6 -0.4486 4.1450 -2.0042 16 1 -1.2908 4.0726 -1.3161 17 6 -0.8646 4.4028 -3.4620 18 6 0.2428 3.4170 -3.8699 19 1 1.2127 3.8895 -4.0250 20 6 -0.1500 2.5022 -5.0011 21 6 -1.2278 1.6486 -4.8574 22 6 -1.5911 0.8128 -5.8969 23 6 -0.8702 0.8232 -7.0764 24 6 0.2109 1.6731 -7.2182 25 6 0.5709 2.5125 -6.1806 26 6 0.0805 2.7814 -2.4790 27 6 1.2914 2.3741 -0.0061 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8403 -0.6764 0.7379 32 1 4.5725 -0.0110 -1.9916 33 1 6.0570 1.0756 1.7960 34 1 6.8331 -0.8122 0.4715 35 1 5.1381 2.5700 -0.0051 36 1 3.8030 4.6364 -0.0166 37 1 -1.8696 4.0526 -3.6978 38 1 -0.6830 5.4252 -3.7937 39 1 -1.7881 1.6370 -3.9342 40 1 -2.4354 0.1486 -5.7860 41 1 -1.1512 0.1671 -7.8869 42 1 0.7744 1.6809 -8.1395 43 1 1.4159 3.1759 -6.2912 44 1 1.0252 2.4946 -2.0170 45 1 -0.6660 1.9879 -2.4459 46 1 0.2128 2.3191 -0.0066 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_197687_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:10 Heat of formation + Delta-G solvation = -70.646882 kcal Electronic energy + Delta-G solvation = -34199.747458 eV Core-core repulsion = 29730.118568 eV Total energy + Delta-G solvation = -4469.628890 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.58015 -41.15852 -40.81188 -38.98192 -38.59517 -38.36637 -37.40943 -37.20670 -32.59985 -32.18796 -31.76350 -31.52445 -28.52178 -27.12663 -26.92355 -26.83286 -23.93229 -23.77255 -23.47993 -22.90852 -21.77717 -20.95053 -19.83117 -19.00449 -18.66159 -18.35871 -18.17794 -17.67617 -17.18782 -17.01003 -16.58144 -16.54529 -16.28839 -16.02091 -15.71988 -15.57119 -15.32327 -15.19662 -14.96415 -14.65031 -14.41688 -14.27958 -14.20685 -14.11646 -13.84145 -13.66716 -13.58063 -13.39941 -13.32569 -13.22942 -13.17560 -12.77946 -12.55738 -12.46972 -12.25588 -12.15505 -11.96453 -11.92211 -11.80659 -11.49981 -11.35442 -10.42175 -10.11366 -9.80731 -9.58938 -9.42280 -4.98940 -1.22992 -0.20970 0.09695 0.41995 0.51257 0.87061 1.29920 1.67135 1.99792 2.16135 2.21732 2.35971 2.58582 2.82147 3.03733 3.18624 3.39862 3.50867 3.56429 3.63271 3.70412 3.71831 3.84157 3.89889 4.01287 4.13150 4.16196 4.20979 4.26264 4.29020 4.32351 4.38447 4.46983 4.50350 4.52198 4.61162 4.63935 4.67199 4.72447 4.74886 4.80068 4.82431 5.00377 5.04667 5.09539 5.13246 5.19549 5.41286 5.58791 5.65869 5.71686 6.12799 6.17703 6.81906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.311 6.311 3 C 0.161 3.839 4 C -0.142 4.142 5 C -0.064 4.064 6 O -0.549 6.549 7 Si 0.774 3.226 8 C -0.056 4.056 9 C -0.133 4.133 10 C 0.087 3.913 11 O -0.667 6.667 12 S 2.609 3.391 13 O -0.967 6.967 14 O -0.956 6.956 15 C -0.640 4.640 16 H 0.180 0.820 17 C -0.090 4.090 18 C -0.095 4.095 19 H 0.112 0.888 20 C -0.076 4.076 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.102 4.102 27 C -0.214 4.214 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.394 0.606 33 H -0.280 1.280 34 H -0.297 1.297 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -3.483 -1.682 4.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.224 6.224 3 C 0.114 3.886 4 C -0.144 4.144 5 C -0.173 4.173 6 O -0.357 6.357 7 Si 0.679 3.321 8 C -0.073 4.073 9 C -0.153 4.153 10 C 0.046 3.954 11 O -0.626 6.626 12 S 2.707 3.293 13 O -0.966 6.966 14 O -0.954 6.954 15 C -0.750 4.750 16 H 0.197 0.803 17 C -0.128 4.128 18 C -0.113 4.113 19 H 0.130 0.870 20 C -0.076 4.076 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.234 4.234 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.244 0.756 33 H -0.207 1.207 34 H -0.225 1.225 35 H 0.195 0.805 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.108 0.892 45 H 0.145 0.855 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.886 -3.615 -0.586 3.768 hybrid contribution -1.526 -0.070 0.181 1.539 sum -2.412 -3.685 -0.404 4.423 Atomic orbital electron populations 1.23557 0.76418 1.06155 1.02881 1.86225 1.23309 1.25251 1.87606 1.18532 0.91557 0.84123 0.94356 1.20155 0.91769 0.96854 1.05582 1.25084 1.09413 0.93370 0.89451 1.86523 1.87278 1.45242 1.16612 0.94006 0.73486 0.81366 0.83276 1.21012 1.01199 0.89180 0.95921 1.21449 0.91392 1.01483 1.00986 1.17957 0.89991 0.80932 1.06532 1.85691 1.73059 1.46603 1.57275 1.04943 0.76401 0.75130 0.72856 1.93608 1.82235 1.37368 1.83353 1.93617 1.43466 1.86329 1.72022 1.32306 1.19285 1.13359 1.10048 0.80252 1.22796 1.01764 1.00571 0.87694 1.21939 1.00221 0.96211 0.92932 0.87014 1.19630 0.96136 0.97201 0.94644 1.21230 0.97005 0.96045 0.99804 1.21438 1.00225 0.99330 0.93514 1.21470 0.95956 0.99365 0.98536 1.21416 0.97618 0.96220 0.99410 1.21331 1.00276 0.99639 0.93508 1.23273 1.03149 0.93045 0.94484 1.21484 1.02729 0.90125 1.09065 0.90622 0.86481 0.91237 0.87854 0.75642 1.20675 1.22517 0.80494 0.82760 0.85585 0.90077 0.84104 0.84522 0.84981 0.84980 0.85390 0.89242 0.85450 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 0.04 9.82 -92.42 -0.91 -0.87 16 3 C 0.16 -0.05 6.52 22.49 0.15 0.10 16 4 C -0.14 0.15 5.27 -19.75 -0.10 0.05 16 5 C -0.06 0.07 2.37 71.24 0.17 0.23 16 6 O -0.55 0.06 12.88 -148.98 -1.92 -1.86 16 7 Si 0.77 -2.72 29.91 68.60 2.05 -0.67 16 8 C -0.06 0.18 8.65 22.24 0.19 0.37 16 9 C -0.13 -0.03 9.04 22.38 0.20 0.17 16 10 C 0.09 0.15 4.34 22.49 0.10 0.24 16 11 O -0.67 -2.50 10.05 -61.43 -0.62 -3.11 16 12 S 2.61 10.03 5.07 -56.49 -0.29 9.75 16 13 O -0.97 -11.68 18.09 -118.57 -2.15 -13.83 16 14 O -0.96 -5.91 14.53 -118.57 -1.72 -7.63 16 15 C -0.64 2.96 4.13 31.12 0.13 3.09 16 16 H 0.18 -1.88 8.14 -2.39 -0.02 -1.90 16 17 C -0.09 0.37 7.15 31.12 0.22 0.60 16 18 C -0.09 0.21 3.59 -11.02 -0.04 0.17 16 19 H 0.11 -0.02 6.84 -2.39 -0.02 -0.04 16 20 C -0.08 0.05 5.29 -19.87 -0.11 -0.05 16 21 C -0.12 0.32 8.63 22.27 0.19 0.51 16 22 C -0.13 0.20 10.05 22.27 0.22 0.42 16 23 C -0.14 0.03 10.05 22.27 0.22 0.25 16 24 C -0.13 -0.07 10.05 22.27 0.22 0.16 16 25 C -0.13 -0.12 9.71 22.27 0.22 0.10 16 26 C -0.10 0.57 5.06 31.12 0.16 0.72 16 27 C -0.21 0.40 5.21 22.46 0.12 0.51 16 28 H 0.08 -0.83 6.60 -2.39 -0.02 -0.85 16 29 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 30 H 0.07 -0.66 7.67 -2.39 -0.02 -0.68 16 31 H 0.10 0.16 7.83 -2.39 -0.02 0.14 16 32 H 0.39 -3.29 8.70 -74.06 -0.64 -3.93 16 33 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 34 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 35 H 0.18 -1.75 5.12 -2.91 -0.01 -1.76 16 36 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 37 H 0.13 -0.94 7.73 -2.38 -0.02 -0.95 16 38 H 0.08 -0.30 8.10 -2.38 -0.02 -0.31 16 39 H 0.14 -1.08 6.64 -2.91 -0.02 -1.10 16 40 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 42 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 43 H 0.13 -0.12 8.05 -2.91 -0.02 -0.14 16 44 H 0.09 -0.38 4.56 -2.39 -0.01 -0.39 16 45 H 0.13 -1.30 5.48 -2.39 -0.01 -1.31 16 46 H 0.17 -1.27 5.39 -2.91 -0.02 -1.29 16 Total: 0.00 -25.37 376.70 -1.74 -27.11 By element: Atomic # 1 Polarization: -18.06 SS G_CDS: 0.43 Total: -17.63 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 3.38 Total: 8.74 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -7.31 Total: -27.30 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.67 kcal Atomic # 16 Polarization: 10.03 SS G_CDS: -0.29 Total: 9.75 kcal Total: -25.37 -1.74 -27.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.538 kcal (2) G-P(sol) polarization free energy of solvation -25.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds