Wall clock time and date at job start Mon Mar 8 2021 12:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99610 * 2 1 4 4 O 1.20823 * 120.00635 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99870 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.85054 * 48.80294 * 5 3 2 7 7 C 1.53780 * 113.61385 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.08222 * 140.06806 * 7 5 3 9 9 H 1.08994 * 113.61985 * 89.19552 * 8 7 5 10 10 S 1.81404 * 113.61448 * 220.02076 * 8 7 5 11 11 O 1.42095 * 110.54059 * 66.84033 * 10 8 7 12 12 O 1.42100 * 110.53898 * 290.09007 * 10 8 7 13 13 O 1.52195 * 104.44695 * 178.46844 * 10 8 7 14 14 C 1.35994 * 114.00265 * 74.89412 * 13 10 8 15 15 C 1.39144 * 120.07288 * 263.80070 * 14 13 10 16 16 O 1.35991 * 120.07589 * 359.97438 * 15 14 13 17 17 C 1.42902 * 117.00205 * 272.84052 * 16 15 14 18 18 C 1.38571 * 119.85228 * 179.97438 * 15 14 13 19 19 C 1.50703 * 119.99942 * 179.97438 * 18 15 14 20 20 O 1.42898 * 109.47231 * 74.99840 * 19 18 15 21 21 Si 1.86307 * 109.47051 * 195.00226 * 19 18 15 22 22 C 1.38236 * 120.00132 * 0.25118 * 18 15 14 23 23 C 1.38254 * 120.14488 * 359.49524 * 22 18 15 24 24 C 1.38245 * 120.14569 * 0.50756 * 23 22 18 25 25 C 1.53787 * 87.16824 * 334.60622 * 8 7 5 26 26 H 1.08997 * 109.47266 * 299.99457 * 1 2 3 27 27 H 1.08996 * 109.47528 * 60.00173 * 1 2 3 28 28 H 1.09009 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08998 * 113.62024 * 25.51595 * 7 5 3 30 30 H 1.09005 * 113.68635 * 254.62331 * 7 5 3 31 31 H 1.09004 * 109.46883 * 55.44992 * 17 16 15 32 32 H 1.09007 * 109.46993 * 175.44208 * 17 16 15 33 33 H 1.08990 * 109.47350 * 295.44681 * 17 16 15 34 34 H 1.09002 * 109.46950 * 314.99851 * 19 18 15 35 35 H 0.96703 * 113.99880 * 59.99759 * 20 19 18 36 36 H 1.48497 * 110.00132 * 58.67838 * 21 19 18 37 37 H 1.48496 * 109.99428 * 180.02562 * 21 19 18 38 38 H 1.07998 * 119.92925 * 179.74506 * 22 18 15 39 39 H 1.07997 * 119.93003 * 180.25109 * 23 22 18 40 40 H 1.08001 * 119.99951 * 179.72582 * 24 23 22 41 41 H 1.08998 * 113.61078 * 139.94211 * 25 8 7 42 42 H 1.08997 * 113.61350 * 270.84020 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1076 2.7143 0.0011 8 6 5.1820 2.2262 0.9872 9 1 6.0819 1.8492 0.5013 10 16 5.5412 3.4092 2.3147 11 8 4.4178 3.5518 3.1730 12 8 6.2181 4.5471 1.7987 13 8 6.5843 2.7099 3.1746 14 6 7.8272 2.6820 2.6233 15 6 8.2498 1.5628 1.9128 16 8 7.4211 0.4942 1.7684 17 6 7.4455 -0.4903 2.8039 18 6 9.5169 1.5394 1.3525 19 6 9.9783 0.3287 0.5827 20 8 9.3424 0.3070 -0.6968 21 14 11.8261 0.4035 0.3568 22 6 10.3600 2.6243 1.5045 23 6 9.9382 3.7384 2.2061 24 6 8.6753 3.7683 2.7676 25 6 4.1945 1.1210 1.3977 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 3.4176 3.4402 0.4312 30 1 4.5099 3.0312 -0.9611 31 1 7.2450 -0.0135 3.7634 32 1 6.6832 -1.2441 2.6065 33 1 8.4266 -0.9642 2.8316 34 1 9.7159 -0.5741 1.1342 35 1 9.5318 1.0819 -1.2433 36 1 12.4978 0.4586 1.6800 37 1 12.2933 -0.7847 -0.4015 38 1 11.3489 2.6032 1.0709 39 1 10.5983 4.5857 2.3193 40 1 8.3498 4.6380 3.3189 41 1 4.6666 0.1522 1.5608 42 1 3.5283 1.4105 2.2103 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:21:44 Heat of formation + Delta-G solvation = -181.863324 kcal Electronic energy + Delta-G solvation = -32154.129486 eV Core-core repulsion = 27582.529546 eV Total energy + Delta-G solvation = -4571.599941 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60980 -41.81667 -40.31444 -39.51489 -38.72150 -38.24274 -37.56052 -37.27318 -37.15684 -32.67492 -31.39037 -29.84800 -28.40881 -27.70263 -27.14476 -26.91866 -24.68016 -23.45243 -23.22666 -21.51025 -20.68518 -19.70639 -19.46193 -19.08815 -18.60509 -18.54076 -18.07248 -17.54743 -17.40008 -17.09600 -16.72210 -16.67315 -16.48909 -16.03481 -15.86262 -15.57114 -15.40532 -14.72040 -14.54785 -14.41444 -14.27367 -14.10520 -13.92337 -13.75846 -13.65321 -13.47560 -13.39729 -13.26536 -13.17422 -13.12311 -13.03264 -12.82315 -12.65357 -12.25986 -12.03711 -11.92972 -11.76960 -11.58148 -11.39408 -11.19679 -10.59829 -10.25340 -10.07701 -5.21373 -1.12080 -0.31140 -0.20702 0.90046 1.09395 1.16288 1.47812 1.69623 1.81989 1.93729 2.42015 2.50196 2.68761 2.89328 3.04719 3.14089 3.19316 3.37197 3.57167 3.58535 3.67755 3.75420 3.90439 3.93827 4.04478 4.09536 4.18248 4.18670 4.24114 4.27046 4.32068 4.34053 4.41279 4.50710 4.54855 4.58141 4.62341 4.65677 4.76537 4.89313 4.94167 4.98065 5.26308 5.38340 6.05128 6.41968 6.72697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.500 6.500 5 C -0.094 4.094 6 H 0.138 0.862 7 C -0.088 4.088 8 C -0.636 4.636 9 H 0.169 0.831 10 S 2.596 3.404 11 O -0.920 6.920 12 O -0.947 6.947 13 O -0.656 6.656 14 C 0.042 3.958 15 C 0.119 3.881 16 O -0.325 6.325 17 C 0.029 3.971 18 C -0.127 4.127 19 C -0.060 4.060 20 O -0.529 6.529 21 Si 0.685 3.315 22 C -0.083 4.083 23 C -0.100 4.100 24 C -0.072 4.072 25 C -0.086 4.086 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.379 0.621 36 H -0.253 1.253 37 H -0.250 1.250 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -2.593 -2.168 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.310 3.690 4 O -0.387 6.387 5 C -0.114 4.114 6 H 0.156 0.844 7 C -0.126 4.126 8 C -0.743 4.743 9 H 0.187 0.813 10 S 2.692 3.308 11 O -0.918 6.918 12 O -0.945 6.945 13 O -0.615 6.615 14 C 0.000 4.000 15 C 0.073 3.927 16 O -0.241 6.241 17 C -0.064 4.064 18 C -0.128 4.128 19 C -0.171 4.171 20 O -0.334 6.334 21 Si 0.586 3.414 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.092 4.092 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.226 0.774 36 H -0.178 1.178 37 H -0.174 1.174 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.124 0.876 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.805 -2.811 -1.311 6.582 hybrid contribution -0.871 -0.622 0.212 1.091 sum 4.934 -3.433 -1.099 6.110 Atomic orbital electron populations 1.23348 0.75821 1.04053 1.02851 1.86509 1.23821 1.33099 1.83780 1.23522 0.91577 0.81594 0.72343 1.90702 1.66884 1.36389 1.44719 1.22435 0.87540 1.00084 1.01301 0.84446 1.22626 0.94094 0.95853 1.00052 1.32115 1.08374 1.15644 1.18210 0.81290 1.05517 0.74408 0.75330 0.75556 1.93664 1.50782 1.84893 1.62440 1.93646 1.71411 1.48168 1.81308 1.85707 1.27988 1.85485 1.62308 1.18538 0.83146 0.97526 1.00838 1.18521 0.90379 0.87488 0.96359 1.86065 1.60118 1.31335 1.46626 1.23179 1.02801 0.90342 0.90109 1.20642 0.92639 0.98279 1.01279 1.25013 1.09509 0.96845 0.85735 1.86575 1.74296 1.47158 1.25367 0.94882 0.73889 0.88162 0.84494 1.21201 0.99086 0.92341 0.97510 1.21168 0.95191 0.98751 0.96665 1.21475 0.93117 0.96995 0.97584 1.22600 0.95109 0.98832 0.95924 0.91613 0.91663 0.87798 0.87541 0.87738 0.92424 0.87808 0.93099 0.86910 0.77412 1.17774 1.17427 0.83724 0.83187 0.83233 0.87640 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.64 10.57 -39.24 -0.41 -1.06 16 3 C 0.47 1.19 7.49 36.01 0.27 1.46 16 4 O -0.50 -2.74 15.65 -18.75 -0.29 -3.04 16 5 C -0.09 0.02 4.26 -90.87 -0.39 -0.36 16 6 H 0.14 -0.34 8.14 -51.93 -0.42 -0.76 16 7 C -0.09 -0.01 6.99 -25.92 -0.18 -0.19 16 8 C -0.64 0.05 3.47 -25.91 -0.09 -0.04 16 9 H 0.17 -0.24 6.07 -51.93 -0.32 -0.56 16 10 S 2.60 7.65 5.12 -107.50 -0.55 7.10 16 11 O -0.92 -5.65 17.31 -67.04 -1.16 -6.81 16 12 O -0.95 -4.15 15.92 -67.04 -1.07 -5.22 16 13 O -0.66 -1.52 9.84 -54.22 -0.53 -2.06 16 14 C 0.04 0.05 4.91 -39.12 -0.19 -0.14 16 15 C 0.12 0.00 4.88 -39.12 -0.19 -0.19 16 16 O -0.32 0.14 7.57 -34.22 -0.26 -0.12 16 17 C 0.03 -0.06 10.98 101.05 1.11 1.05 16 18 C -0.13 0.20 5.27 -104.50 -0.55 -0.35 16 19 C -0.06 0.12 2.37 36.01 0.09 0.21 16 20 O -0.53 0.83 12.88 -35.23 -0.45 0.38 16 21 Si 0.69 -2.11 29.91 -169.99 -5.08 -7.19 16 22 C -0.08 0.27 8.66 -39.58 -0.34 -0.08 16 23 C -0.10 0.26 10.04 -39.57 -0.40 -0.14 16 24 C -0.07 0.00 8.65 -39.46 -0.34 -0.34 16 25 C -0.09 0.04 7.21 -25.83 -0.19 -0.15 16 26 H 0.07 0.01 8.13 -51.93 -0.42 -0.42 16 27 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 28 H 0.10 -0.27 8.14 -51.92 -0.42 -0.69 16 29 H 0.11 0.14 7.40 -51.93 -0.38 -0.25 16 30 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.05 -0.14 7.31 -51.93 -0.38 -0.52 16 34 H 0.11 -0.17 6.84 -51.93 -0.36 -0.52 16 35 H 0.38 -2.07 8.70 45.56 0.40 -1.68 16 36 H -0.25 0.20 7.11 56.52 0.40 0.60 16 37 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 38 H 0.15 -0.89 5.11 -52.49 -0.27 -1.16 16 39 H 0.15 -0.80 8.06 -52.49 -0.42 -1.23 16 40 H 0.15 -0.10 8.00 -52.49 -0.42 -0.52 16 41 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.11 0.05 7.41 -51.93 -0.39 -0.34 16 LS Contribution 364.75 15.07 5.50 5.50 Total: 0.00 -11.75 364.75 -9.76 -21.51 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: -5.11 Total: -10.80 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.33 Total: 1.82 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -4.18 Total: -17.92 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: -5.08 Total: -7.19 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -0.55 Total: 7.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -11.75 -9.76 -21.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.355 kcal (2) G-P(sol) polarization free energy of solvation -11.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds