Wall clock time and date at job start Mon Mar 8 2021 12:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99610 * 2 1 4 4 O 1.20823 * 120.00635 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99870 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.85054 * 48.80294 * 5 3 2 7 7 C 1.53780 * 113.61385 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.08222 * 140.06806 * 7 5 3 9 9 H 1.08994 * 113.61985 * 89.19552 * 8 7 5 10 10 S 1.81404 * 113.61448 * 220.02076 * 8 7 5 11 11 O 1.42095 * 110.54059 * 66.84033 * 10 8 7 12 12 O 1.42100 * 110.53898 * 290.09007 * 10 8 7 13 13 O 1.52195 * 104.44695 * 178.46844 * 10 8 7 14 14 C 1.35994 * 114.00265 * 74.89412 * 13 10 8 15 15 C 1.39144 * 120.07288 * 263.80070 * 14 13 10 16 16 O 1.35991 * 120.07589 * 359.97438 * 15 14 13 17 17 C 1.42902 * 117.00205 * 272.84052 * 16 15 14 18 18 C 1.38571 * 119.85228 * 179.97438 * 15 14 13 19 19 C 1.50703 * 119.99942 * 179.97438 * 18 15 14 20 20 O 1.42898 * 109.47231 * 74.99840 * 19 18 15 21 21 Si 1.86307 * 109.47051 * 195.00226 * 19 18 15 22 22 C 1.38236 * 120.00132 * 0.25118 * 18 15 14 23 23 C 1.38254 * 120.14488 * 359.49524 * 22 18 15 24 24 C 1.38245 * 120.14569 * 0.50756 * 23 22 18 25 25 C 1.53787 * 87.16824 * 334.60622 * 8 7 5 26 26 H 1.08997 * 109.47266 * 299.99457 * 1 2 3 27 27 H 1.08996 * 109.47528 * 60.00173 * 1 2 3 28 28 H 1.09009 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08998 * 113.62024 * 25.51595 * 7 5 3 30 30 H 1.09005 * 113.68635 * 254.62331 * 7 5 3 31 31 H 1.09004 * 109.46883 * 55.44992 * 17 16 15 32 32 H 1.09007 * 109.46993 * 175.44208 * 17 16 15 33 33 H 1.08990 * 109.47350 * 295.44681 * 17 16 15 34 34 H 1.09002 * 109.46950 * 314.99851 * 19 18 15 35 35 H 0.96703 * 113.99880 * 59.99759 * 20 19 18 36 36 H 1.48497 * 110.00132 * 58.67838 * 21 19 18 37 37 H 1.48496 * 109.99428 * 180.02562 * 21 19 18 38 38 H 1.07998 * 119.92925 * 179.74506 * 22 18 15 39 39 H 1.07997 * 119.93003 * 180.25109 * 23 22 18 40 40 H 1.08001 * 119.99951 * 179.72582 * 24 23 22 41 41 H 1.08998 * 113.61078 * 139.94211 * 25 8 7 42 42 H 1.08997 * 113.61350 * 270.84020 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1076 2.7143 0.0011 8 6 5.1820 2.2262 0.9872 9 1 6.0819 1.8492 0.5013 10 16 5.5412 3.4092 2.3147 11 8 4.4178 3.5518 3.1730 12 8 6.2181 4.5471 1.7987 13 8 6.5843 2.7099 3.1746 14 6 7.8272 2.6820 2.6233 15 6 8.2498 1.5628 1.9128 16 8 7.4211 0.4942 1.7684 17 6 7.4455 -0.4903 2.8039 18 6 9.5169 1.5394 1.3525 19 6 9.9783 0.3287 0.5827 20 8 9.3424 0.3070 -0.6968 21 14 11.8261 0.4035 0.3568 22 6 10.3600 2.6243 1.5045 23 6 9.9382 3.7384 2.2061 24 6 8.6753 3.7683 2.7676 25 6 4.1945 1.1210 1.3977 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 3.4176 3.4402 0.4312 30 1 4.5099 3.0312 -0.9611 31 1 7.2450 -0.0135 3.7634 32 1 6.6832 -1.2441 2.6065 33 1 8.4266 -0.9642 2.8316 34 1 9.7159 -0.5741 1.1342 35 1 9.5318 1.0819 -1.2433 36 1 12.4978 0.4586 1.6800 37 1 12.2933 -0.7847 -0.4015 38 1 11.3489 2.6032 1.0709 39 1 10.5983 4.5857 2.3193 40 1 8.3498 4.6380 3.3189 41 1 4.6666 0.1522 1.5608 42 1 3.5283 1.4105 2.2103 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:21:43 Heat of formation + Delta-G solvation = -185.379240 kcal Electronic energy + Delta-G solvation = -32154.281948 eV Core-core repulsion = 27582.529546 eV Total energy + Delta-G solvation = -4571.752402 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58006 -41.95761 -40.27723 -39.57172 -38.61903 -38.46747 -37.48230 -37.44733 -37.37844 -32.53085 -31.25582 -29.91146 -28.24169 -27.71941 -27.13778 -26.75725 -24.64035 -23.51165 -23.14066 -21.56262 -20.70637 -19.82900 -19.47269 -19.09246 -18.66786 -18.51410 -18.15122 -17.57561 -17.38532 -17.12653 -16.67550 -16.65698 -16.42797 -15.96530 -15.80337 -15.42479 -15.33335 -14.79054 -14.52591 -14.45030 -14.28571 -14.13093 -13.95149 -13.81697 -13.61128 -13.55931 -13.42365 -13.36242 -13.29592 -13.13798 -13.04268 -12.76785 -12.64018 -12.16750 -11.91304 -11.88713 -11.86456 -11.66079 -11.35141 -11.24927 -10.41195 -10.14729 -9.93733 -4.97880 -1.23262 -0.19891 -0.11310 0.81578 0.99076 1.29941 1.64144 1.68879 2.01770 2.10441 2.36312 2.49497 2.65177 2.84523 2.99373 3.18418 3.27296 3.60053 3.63465 3.71223 3.84340 3.87180 3.93403 4.09842 4.21749 4.23731 4.25575 4.26611 4.30041 4.34232 4.36352 4.43721 4.51639 4.59554 4.65784 4.66920 4.73624 4.79954 4.91302 4.94779 5.08756 5.15004 5.26426 5.45574 6.17302 6.56933 6.83018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.538 6.538 5 C -0.086 4.086 6 H 0.169 0.831 7 C -0.098 4.098 8 C -0.611 4.611 9 H 0.190 0.810 10 S 2.592 3.408 11 O -0.966 6.966 12 O -0.970 6.970 13 O -0.661 6.661 14 C 0.012 3.988 15 C 0.111 3.889 16 O -0.331 6.331 17 C 0.022 3.978 18 C -0.130 4.130 19 C -0.067 4.067 20 O -0.545 6.545 21 Si 0.781 3.219 22 C -0.073 4.073 23 C -0.094 4.094 24 C -0.093 4.093 25 C -0.089 4.089 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.049 0.951 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.395 0.605 36 H -0.280 1.280 37 H -0.300 1.300 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -3.563 -3.535 9.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.427 6.427 5 C -0.106 4.106 6 H 0.187 0.813 7 C -0.137 4.137 8 C -0.721 4.721 9 H 0.207 0.793 10 S 2.692 3.308 11 O -0.964 6.964 12 O -0.968 6.968 13 O -0.620 6.620 14 C -0.030 4.030 15 C 0.065 3.935 16 O -0.247 6.247 17 C -0.072 4.072 18 C -0.131 4.131 19 C -0.176 4.176 20 O -0.352 6.352 21 Si 0.686 3.314 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.128 4.128 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.245 0.755 36 H -0.206 1.206 37 H -0.228 1.228 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.582 -3.741 -2.653 8.861 hybrid contribution -1.387 -0.421 0.611 1.573 sum 6.195 -4.162 -2.042 7.738 Atomic orbital electron populations 1.23566 0.74961 1.05771 1.02495 1.86510 1.24801 1.32673 1.83371 1.24090 0.92630 0.81227 0.71142 1.90686 1.67907 1.37557 1.46574 1.22582 0.85740 1.00203 1.02048 0.81309 1.22762 0.93854 0.96028 1.01022 1.31925 1.09170 1.14491 1.16551 0.79302 1.05460 0.73667 0.75818 0.75837 1.93599 1.52511 1.85971 1.64326 1.93597 1.71595 1.50009 1.81611 1.85671 1.28712 1.85204 1.62444 1.18910 0.82793 0.98799 1.02499 1.18665 0.91092 0.87261 0.96528 1.86029 1.60345 1.31383 1.46989 1.23348 1.03882 0.90357 0.89573 1.20814 0.92226 0.98983 1.01095 1.25180 1.10458 0.96340 0.85643 1.86537 1.74608 1.48501 1.25599 0.93839 0.70979 0.85743 0.80857 1.21589 1.00019 0.91216 0.96233 1.21543 0.94338 0.99868 0.95413 1.21712 0.94344 0.96808 0.98417 1.22696 0.94782 0.99745 0.95547 0.92248 0.91831 0.85056 0.89420 0.85335 0.93247 0.86001 0.92459 0.87741 0.75451 1.20640 1.22811 0.80410 0.80203 0.83764 0.85183 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.28 10.57 -51.36 -0.54 -1.82 16 3 C 0.47 2.62 7.49 71.24 0.53 3.15 16 4 O -0.54 -6.78 15.65 21.97 0.34 -6.44 16 5 C -0.09 0.09 4.26 -10.95 -0.05 0.04 16 6 H 0.17 -1.24 8.14 -2.39 -0.02 -1.26 16 7 C -0.10 -0.04 6.99 31.12 0.22 0.17 16 8 C -0.61 -0.06 3.47 31.12 0.11 0.05 16 9 H 0.19 -0.72 6.07 -2.39 -0.01 -0.74 16 10 S 2.59 20.70 5.12 -56.49 -0.29 20.41 16 11 O -0.97 -15.07 17.31 -118.57 -2.05 -17.12 16 12 O -0.97 -10.52 15.92 -118.57 -1.89 -12.41 16 13 O -0.66 -4.36 9.84 -60.50 -0.60 -4.95 16 14 C 0.01 0.04 4.91 22.57 0.11 0.15 16 15 C 0.11 -0.02 4.88 22.57 0.11 0.09 16 16 O -0.33 0.44 7.57 -79.58 -0.60 -0.16 16 17 C 0.02 -0.09 10.98 113.37 1.24 1.15 16 18 C -0.13 0.58 5.27 -19.78 -0.10 0.48 16 19 C -0.07 0.36 2.37 71.24 0.17 0.53 16 20 O -0.54 2.60 12.88 -148.98 -1.92 0.69 16 21 Si 0.78 -5.99 29.91 68.60 2.05 -3.94 16 22 C -0.07 0.62 8.66 22.27 0.19 0.81 16 23 C -0.09 0.62 10.04 22.28 0.22 0.85 16 24 C -0.09 -0.04 8.65 22.35 0.19 0.15 16 25 C -0.09 0.07 7.21 31.18 0.22 0.30 16 26 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 27 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 28 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 29 H 0.09 0.41 7.40 -2.39 -0.02 0.40 16 30 H 0.13 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.12 -1.03 8.14 -2.38 -0.02 -1.05 16 33 H 0.06 -0.33 7.31 -2.39 -0.02 -0.35 16 34 H 0.11 -0.40 6.84 -2.39 -0.02 -0.42 16 35 H 0.40 -5.17 8.70 -74.06 -0.64 -5.81 16 36 H -0.28 0.88 7.11 99.48 0.71 1.59 16 37 H -0.30 -0.26 7.11 99.48 0.71 0.45 16 38 H 0.18 -2.81 5.11 -2.91 -0.01 -2.83 16 39 H 0.18 -2.37 8.06 -2.91 -0.02 -2.39 16 40 H 0.14 0.07 8.00 -2.91 -0.02 0.05 16 41 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.09 0.24 7.41 -2.39 -0.02 0.22 16 Total: 0.00 -30.40 364.75 -0.65 -31.05 By element: Atomic # 1 Polarization: -14.91 SS G_CDS: 0.47 Total: -14.44 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 4.37 Total: 9.12 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -7.26 Total: -42.21 kcal Atomic # 14 Polarization: -5.99 SS G_CDS: 2.05 Total: -3.94 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -0.29 Total: 20.41 kcal Total: -30.40 -0.65 -31.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.328 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds