Wall clock time and date at job start Mon Mar 8 2021 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35994 * 117.00256 * 2 1 4 4 C 1.38534 * 120.07137 * 264.36784 * 3 2 1 5 5 C 1.50696 * 119.99990 * 359.97438 * 4 3 2 6 6 O 1.42892 * 109.47357 * 75.27838 * 5 4 3 7 7 Si 1.86297 * 109.47307 * 195.27941 * 5 4 3 8 8 H 1.48506 * 109.47000 * 59.99609 * 7 5 4 9 9 H 1.48494 * 109.47410 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47096 * 300.00391 * 7 5 4 11 11 C 1.38283 * 119.99768 * 180.27293 * 4 3 2 12 12 C 1.38206 * 120.14871 * 359.72218 * 11 4 3 13 13 C 1.38293 * 120.14684 * 0.02562 * 12 11 4 14 14 C 1.38523 * 119.99553 * 359.97438 * 13 12 11 15 15 O 1.36000 * 120.07299 * 180.02562 * 14 13 12 16 16 S 1.52200 * 113.99792 * 274.50879 * 15 14 13 17 17 O 1.42108 * 104.27373 * 318.68312 * 16 15 14 18 18 O 1.42103 * 104.27518 * 190.82992 * 16 15 14 19 19 C 1.81402 * 104.45470 * 74.75417 * 16 15 14 20 20 C 1.53001 * 109.47082 * 174.59172 * 19 16 15 21 21 C 1.53004 * 109.46767 * 179.97438 * 20 19 16 22 22 Si 1.86298 * 109.46810 * 179.97438 * 21 20 19 23 23 C 1.86300 * 109.47041 * 60.00419 * 22 21 20 24 24 C 1.86302 * 109.46870 * 180.02562 * 22 21 20 25 25 C 1.86295 * 109.47324 * 300.00502 * 22 21 20 26 26 H 1.09000 * 109.47060 * 184.94085 * 1 2 3 27 27 H 1.09005 * 109.46684 * 304.93941 * 1 2 3 28 28 H 1.09002 * 109.47518 * 64.93563 * 1 2 3 29 29 H 1.09003 * 109.47436 * 315.28033 * 5 4 3 30 30 H 0.96703 * 114.00475 * 59.99366 * 6 5 4 31 31 H 1.07998 * 119.92722 * 179.73849 * 11 4 3 32 32 H 1.07993 * 119.93027 * 179.97438 * 12 11 4 33 33 H 1.07995 * 120.00013 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.46814 * 294.59750 * 19 16 15 35 35 H 1.09001 * 109.46763 * 54.59341 * 19 16 15 36 36 H 1.08997 * 109.47279 * 300.00189 * 20 19 16 37 37 H 1.09000 * 109.46697 * 60.00227 * 20 19 16 38 38 H 1.08997 * 109.47478 * 300.00193 * 21 20 19 39 39 H 1.09001 * 109.46818 * 60.00328 * 21 20 19 40 40 H 1.08997 * 109.47081 * 59.99801 * 23 22 21 41 41 H 1.09001 * 109.47163 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47253 * 299.99912 * 23 22 21 43 43 H 1.09001 * 109.46992 * 60.00293 * 24 22 21 44 44 H 1.09001 * 109.47134 * 180.02562 * 24 22 21 45 45 H 1.08997 * 109.47245 * 300.00194 * 24 22 21 46 46 H 1.08991 * 109.47657 * 59.99993 * 25 22 21 47 47 H 1.09001 * 109.46938 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47200 * 299.99516 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4664 1.7768 -1.1931 5 6 2.2397 1.0484 -2.4927 6 8 0.8630 1.1497 -2.8617 7 14 3.2971 1.8101 -3.8241 8 1 4.7279 1.7049 -3.4406 9 1 3.0742 1.0920 -5.1046 10 1 2.9326 3.2402 -3.9880 11 6 3.0991 3.0063 -1.1908 12 6 3.3089 3.6768 -0.0006 13 6 2.8875 3.1207 1.1934 14 6 2.2530 1.8893 1.1981 15 8 1.8375 1.3413 2.3714 16 16 2.9130 0.5473 3.0990 17 8 3.5758 -0.1715 2.0678 18 8 2.2097 -0.1321 4.1301 19 6 4.0102 1.8095 3.8016 20 6 5.0677 1.1354 4.6780 21 6 5.9934 2.2000 5.2701 22 14 7.2806 1.3792 6.3379 23 6 8.2791 0.1926 5.3056 24 6 8.4074 2.6756 7.0594 25 6 6.4421 0.4488 7.7170 26 1 -0.3633 -1.0239 0.0885 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4354 -0.9309 29 1 2.5073 -0.0014 -2.3724 30 1 0.5548 2.0578 -2.9860 31 1 3.4299 3.4438 -2.1211 32 1 3.8038 4.6366 -0.0028 33 1 3.0530 3.6465 2.1221 34 1 4.5004 2.3545 2.9949 35 1 3.4257 2.5032 4.4060 36 1 4.5774 0.5904 5.4847 37 1 5.6520 0.4417 4.0735 38 1 6.4837 2.7446 4.4632 39 1 5.4093 2.8940 5.8744 40 1 8.7697 0.7369 4.4987 41 1 9.0325 -0.2873 5.9303 42 1 7.6196 -0.5658 4.8837 43 1 7.8229 3.3695 7.6635 44 1 9.1608 2.1954 7.6838 45 1 8.8980 3.2203 6.2528 46 1 5.7826 -0.3096 7.2953 47 1 7.1952 -0.0310 8.3420 48 1 5.8579 1.1431 8.3210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:47:03 Heat of formation + Delta-G solvation = -191.077647 kcal Electronic energy + Delta-G solvation = -29772.768935 eV Core-core repulsion = 25658.841756 eV Total energy + Delta-G solvation = -4113.927179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52326 -40.19039 -38.53862 -38.15963 -37.56740 -37.04033 -36.00214 -32.71146 -31.26876 -29.76971 -28.58073 -28.45267 -28.41363 -27.97401 -26.92166 -24.68345 -23.44433 -22.67473 -21.44060 -19.51195 -19.21287 -18.80233 -18.53803 -17.92482 -17.16048 -16.88150 -16.77632 -16.24456 -16.09395 -15.79870 -15.59806 -15.30708 -15.02327 -14.74148 -14.39226 -14.28267 -14.20586 -14.10973 -14.05457 -13.72071 -13.69317 -13.56798 -13.41482 -13.29908 -13.25335 -13.19963 -13.13708 -13.11292 -13.07477 -12.98560 -12.67553 -12.28137 -12.16731 -12.02410 -11.87340 -11.75140 -11.03591 -10.88072 -10.84505 -10.61215 -10.54424 -10.26928 -9.93602 -1.07600 -0.26328 -0.17382 0.96067 1.09561 1.29409 1.43849 1.67926 1.80077 1.81426 1.82758 1.99188 2.53121 2.62838 2.67016 2.94637 3.19740 3.40052 3.42529 3.53334 3.55572 3.70201 3.78384 3.89404 3.97525 4.17782 4.21633 4.40502 4.46370 4.49713 4.53524 4.61423 4.64742 4.66724 4.68174 4.72070 4.72558 4.73845 4.75452 4.76209 4.82970 4.86528 4.92725 4.99091 5.20055 5.29892 5.42372 5.51079 5.53446 6.33819 6.42168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.159 3.841 4 C -0.124 4.124 5 C -0.081 4.081 6 O -0.532 6.532 7 Si 0.954 3.046 8 H -0.245 1.245 9 H -0.248 1.248 10 H -0.250 1.250 11 C -0.098 4.098 12 C -0.100 4.100 13 C -0.119 4.119 14 C 0.044 3.956 15 O -0.660 6.660 16 S 2.583 3.417 17 O -0.935 6.935 18 O -0.924 6.924 19 C -0.651 4.651 20 C -0.101 4.101 21 C -0.405 4.405 22 Si 1.002 2.998 23 C -0.453 4.453 24 C -0.449 4.449 25 C -0.454 4.454 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.374 0.626 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 6.532 -1.539 7.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.238 6.238 3 C 0.112 3.888 4 C -0.125 4.125 5 C -0.191 4.191 6 O -0.337 6.337 7 Si 0.775 3.225 8 H -0.168 1.168 9 H -0.172 1.172 10 H -0.174 1.174 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.139 4.139 14 C 0.002 3.998 15 O -0.619 6.619 16 S 2.678 3.322 17 O -0.933 6.933 18 O -0.922 6.922 19 C -0.778 4.778 20 C -0.140 4.140 21 C -0.491 4.491 22 Si 1.199 2.801 23 C -0.561 4.561 24 C -0.556 4.556 25 C -0.561 4.561 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.221 0.779 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.242 5.433 -2.219 6.282 hybrid contribution -0.205 1.131 0.931 1.479 sum 2.037 6.563 -1.288 6.992 Atomic orbital electron populations 1.23243 0.77006 1.04172 1.01848 1.86044 1.20933 1.22783 1.94010 1.18496 0.94836 0.85500 0.89938 1.20654 1.01048 0.95278 0.95507 1.25055 0.90149 1.06645 0.97231 1.86573 1.24018 1.32273 1.90847 0.85652 0.79112 0.79433 0.78254 1.16821 1.17158 1.17403 1.21336 0.97017 0.93691 0.99563 1.21025 0.99494 1.00655 0.90679 1.21431 0.98357 0.93165 1.00980 1.18529 1.04665 0.94794 0.81818 1.85727 1.61013 1.75333 1.39780 1.05947 0.74924 0.76071 0.75232 1.93691 1.76178 1.69757 1.53701 1.93651 1.70095 1.69766 1.58666 1.31008 1.15082 1.19141 1.12603 1.20971 0.95670 0.98575 0.98752 1.26164 1.09562 1.04150 1.09234 0.79326 0.66683 0.67155 0.66966 1.26174 1.09268 1.11132 1.09500 1.26102 1.10392 1.12260 1.06881 1.26178 1.07868 1.08640 1.13442 0.88259 0.93225 0.91438 0.85445 0.77889 0.84160 0.83446 0.83448 0.84578 0.84345 0.89795 0.90022 0.90047 0.90026 0.91168 0.91092 0.91095 0.91260 0.91135 0.91272 0.91063 0.91099 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 11.13 101.05 1.12 1.18 16 2 O -0.32 -1.44 9.37 -34.62 -0.32 -1.76 16 3 C 0.16 0.47 5.08 -39.12 -0.20 0.28 16 4 C -0.12 -0.06 5.27 -104.50 -0.55 -0.61 16 5 C -0.08 0.03 2.38 36.00 0.09 0.12 16 6 O -0.53 0.32 11.54 -35.23 -0.41 -0.08 16 7 Si 0.95 -1.58 25.49 -169.99 -4.33 -5.91 16 8 H -0.25 0.23 7.11 56.52 0.40 0.63 16 9 H -0.25 0.01 7.11 56.52 0.40 0.41 16 10 H -0.25 0.66 6.73 56.52 0.38 1.04 16 11 C -0.10 0.17 8.65 -39.58 -0.34 -0.17 16 12 C -0.10 0.27 10.04 -39.57 -0.40 -0.13 16 13 C -0.12 0.17 8.44 -39.46 -0.33 -0.16 16 14 C 0.04 0.09 4.75 -39.12 -0.19 -0.10 16 15 O -0.66 -1.93 9.84 -54.23 -0.53 -2.46 16 16 S 2.58 7.98 5.16 -107.50 -0.56 7.42 16 17 O -0.93 -5.22 16.33 -67.11 -1.10 -6.32 16 18 O -0.92 -5.84 18.09 -67.04 -1.21 -7.05 16 19 C -0.65 0.90 5.10 37.16 0.19 1.09 16 20 C -0.10 0.12 4.59 -26.73 -0.12 -0.01 16 21 C -0.41 1.05 4.45 37.16 0.17 1.22 16 22 Si 1.00 -2.91 12.19 -169.99 -2.07 -4.98 16 23 C -0.45 0.68 8.65 101.05 0.87 1.55 16 24 C -0.45 0.86 8.65 101.05 0.87 1.73 16 25 C -0.45 0.62 8.65 101.05 0.87 1.49 16 26 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 0.05 6.76 -51.93 -0.35 -0.30 16 29 H 0.13 0.05 7.82 -51.93 -0.41 -0.36 16 30 H 0.37 -1.61 8.70 45.56 0.40 -1.22 16 31 H 0.14 -0.54 4.88 -52.49 -0.26 -0.79 16 32 H 0.15 -0.85 8.06 -52.49 -0.42 -1.27 16 33 H 0.15 -0.66 7.10 -52.49 -0.37 -1.03 16 34 H 0.14 -0.47 6.62 -51.93 -0.34 -0.81 16 35 H 0.14 -0.49 8.14 -51.92 -0.42 -0.91 16 36 H 0.08 -0.13 7.79 -51.93 -0.40 -0.53 16 37 H 0.08 -0.15 7.79 -51.93 -0.40 -0.55 16 38 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 39 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 43 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 44 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 46 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 47 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 48 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 LS Contribution 402.00 15.07 6.06 6.06 Total: 0.00 -10.42 402.00 -9.60 -20.02 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -7.18 Total: -12.41 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 2.06 Total: 7.48 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -3.57 Total: -17.68 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: -6.41 Total: -10.89 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -0.56 Total: 7.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -10.42 -9.60 -20.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.060 kcal (2) G-P(sol) polarization free energy of solvation -10.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds