Wall clock time and date at job start Mon Mar 8 2021 13:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35994 * 117.00256 * 2 1 4 4 C 1.38534 * 120.07137 * 264.36784 * 3 2 1 5 5 C 1.50696 * 119.99990 * 359.97438 * 4 3 2 6 6 O 1.42892 * 109.47357 * 75.27838 * 5 4 3 7 7 Si 1.86297 * 109.47307 * 195.27941 * 5 4 3 8 8 H 1.48506 * 109.47000 * 59.99609 * 7 5 4 9 9 H 1.48494 * 109.47410 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47096 * 300.00391 * 7 5 4 11 11 C 1.38283 * 119.99768 * 180.27293 * 4 3 2 12 12 C 1.38206 * 120.14871 * 359.72218 * 11 4 3 13 13 C 1.38293 * 120.14684 * 0.02562 * 12 11 4 14 14 C 1.38523 * 119.99553 * 359.97438 * 13 12 11 15 15 O 1.36000 * 120.07299 * 180.02562 * 14 13 12 16 16 S 1.52200 * 113.99792 * 274.50879 * 15 14 13 17 17 O 1.42108 * 104.27373 * 318.68312 * 16 15 14 18 18 O 1.42103 * 104.27518 * 190.82992 * 16 15 14 19 19 C 1.81402 * 104.45470 * 74.75417 * 16 15 14 20 20 C 1.53001 * 109.47082 * 174.59172 * 19 16 15 21 21 C 1.53004 * 109.46767 * 179.97438 * 20 19 16 22 22 Si 1.86298 * 109.46810 * 179.97438 * 21 20 19 23 23 C 1.86300 * 109.47041 * 60.00419 * 22 21 20 24 24 C 1.86302 * 109.46870 * 180.02562 * 22 21 20 25 25 C 1.86295 * 109.47324 * 300.00502 * 22 21 20 26 26 H 1.09000 * 109.47060 * 184.94085 * 1 2 3 27 27 H 1.09005 * 109.46684 * 304.93941 * 1 2 3 28 28 H 1.09002 * 109.47518 * 64.93563 * 1 2 3 29 29 H 1.09003 * 109.47436 * 315.28033 * 5 4 3 30 30 H 0.96703 * 114.00475 * 59.99366 * 6 5 4 31 31 H 1.07998 * 119.92722 * 179.73849 * 11 4 3 32 32 H 1.07993 * 119.93027 * 179.97438 * 12 11 4 33 33 H 1.07995 * 120.00013 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.46814 * 294.59750 * 19 16 15 35 35 H 1.09001 * 109.46763 * 54.59341 * 19 16 15 36 36 H 1.08997 * 109.47279 * 300.00189 * 20 19 16 37 37 H 1.09000 * 109.46697 * 60.00227 * 20 19 16 38 38 H 1.08997 * 109.47478 * 300.00193 * 21 20 19 39 39 H 1.09001 * 109.46818 * 60.00328 * 21 20 19 40 40 H 1.08997 * 109.47081 * 59.99801 * 23 22 21 41 41 H 1.09001 * 109.47163 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47253 * 299.99912 * 23 22 21 43 43 H 1.09001 * 109.46992 * 60.00293 * 24 22 21 44 44 H 1.09001 * 109.47134 * 180.02562 * 24 22 21 45 45 H 1.08997 * 109.47245 * 300.00194 * 24 22 21 46 46 H 1.08991 * 109.47657 * 59.99993 * 25 22 21 47 47 H 1.09001 * 109.46938 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47200 * 299.99516 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4664 1.7768 -1.1931 5 6 2.2397 1.0484 -2.4927 6 8 0.8630 1.1497 -2.8617 7 14 3.2971 1.8101 -3.8241 8 1 4.7279 1.7049 -3.4406 9 1 3.0742 1.0920 -5.1046 10 1 2.9326 3.2402 -3.9880 11 6 3.0991 3.0063 -1.1908 12 6 3.3089 3.6768 -0.0006 13 6 2.8875 3.1207 1.1934 14 6 2.2530 1.8893 1.1981 15 8 1.8375 1.3413 2.3714 16 16 2.9130 0.5473 3.0990 17 8 3.5758 -0.1715 2.0678 18 8 2.2097 -0.1321 4.1301 19 6 4.0102 1.8095 3.8016 20 6 5.0677 1.1354 4.6780 21 6 5.9934 2.2000 5.2701 22 14 7.2806 1.3792 6.3379 23 6 8.2791 0.1926 5.3056 24 6 8.4074 2.6756 7.0594 25 6 6.4421 0.4488 7.7170 26 1 -0.3633 -1.0239 0.0885 27 1 -0.3633 0.5886 0.8425 28 1 -0.3634 0.4354 -0.9309 29 1 2.5073 -0.0014 -2.3724 30 1 0.5548 2.0578 -2.9860 31 1 3.4299 3.4438 -2.1211 32 1 3.8038 4.6366 -0.0028 33 1 3.0530 3.6465 2.1221 34 1 4.5004 2.3545 2.9949 35 1 3.4257 2.5032 4.4060 36 1 4.5774 0.5904 5.4847 37 1 5.6520 0.4417 4.0735 38 1 6.4837 2.7446 4.4632 39 1 5.4093 2.8940 5.8744 40 1 8.7697 0.7369 4.4987 41 1 9.0325 -0.2873 5.9303 42 1 7.6196 -0.5658 4.8837 43 1 7.8229 3.3695 7.6635 44 1 9.1608 2.1954 7.6838 45 1 8.8980 3.2203 6.2528 46 1 5.7826 -0.3096 7.2953 47 1 7.1952 -0.0310 8.3420 48 1 5.8579 1.1431 8.3210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:47:02 Heat of formation + Delta-G solvation = -190.860272 kcal Electronic energy + Delta-G solvation = -29772.759509 eV Core-core repulsion = 25658.841756 eV Total energy + Delta-G solvation = -4113.917753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53445 -40.22414 -38.57972 -38.43025 -37.49072 -37.29860 -35.87100 -32.60830 -31.21600 -29.61769 -28.42358 -28.31198 -28.25753 -28.06395 -26.84420 -24.69053 -23.33013 -22.54481 -21.47820 -19.59982 -19.24665 -18.85858 -18.62679 -17.92035 -17.19100 -16.87556 -16.75056 -16.12357 -16.05228 -15.78889 -15.63131 -15.38291 -14.88985 -14.62522 -14.34959 -14.18923 -14.13562 -14.02011 -13.96919 -13.59269 -13.56907 -13.48816 -13.40019 -13.35744 -13.33957 -13.17028 -13.13347 -13.04512 -12.97804 -12.95888 -12.74261 -12.14386 -12.08159 -11.83648 -11.81957 -11.62228 -11.14156 -10.70742 -10.68499 -10.46883 -10.42049 -10.16733 -9.87510 -1.15869 -0.17259 -0.11837 0.93486 1.15381 1.44040 1.57044 1.91861 1.95357 2.00456 2.03027 2.11016 2.49630 2.65015 2.74148 2.86101 3.29518 3.53015 3.58731 3.65968 3.75935 3.78645 3.94130 4.07754 4.17091 4.26104 4.29512 4.38962 4.41606 4.56250 4.61443 4.69431 4.75792 4.79416 4.80958 4.83468 4.86153 4.87999 4.88316 4.88857 4.90768 5.07460 5.10274 5.11485 5.46024 5.47626 5.60327 5.66289 5.67537 6.26382 6.70008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.119 3.881 4 C -0.134 4.134 5 C -0.091 4.091 6 O -0.548 6.548 7 Si 0.997 3.003 8 H -0.253 1.253 9 H -0.278 1.278 10 H -0.221 1.221 11 C -0.096 4.096 12 C -0.088 4.088 13 C -0.116 4.116 14 C 0.015 3.985 15 O -0.668 6.668 16 S 2.569 3.431 17 O -0.974 6.974 18 O -0.975 6.975 19 C -0.622 4.622 20 C -0.121 4.121 21 C -0.407 4.407 22 Si 1.068 2.932 23 C -0.475 4.475 24 C -0.460 4.460 25 C -0.477 4.477 26 H 0.102 0.898 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.390 0.610 31 H 0.166 0.834 32 H 0.191 0.809 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 10.432 -1.831 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.073 3.927 4 C -0.135 4.135 5 C -0.200 4.200 6 O -0.355 6.355 7 Si 0.817 3.183 8 H -0.177 1.177 9 H -0.203 1.203 10 H -0.143 1.143 11 C -0.114 4.114 12 C -0.105 4.105 13 C -0.136 4.136 14 C -0.027 4.027 15 O -0.627 6.627 16 S 2.671 3.329 17 O -0.973 6.973 18 O -0.973 6.973 19 C -0.753 4.753 20 C -0.160 4.160 21 C -0.493 4.493 22 Si 1.260 2.740 23 C -0.580 4.580 24 C -0.567 4.567 25 C -0.582 4.582 26 H 0.120 0.880 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.239 0.761 31 H 0.183 0.817 32 H 0.208 0.792 33 H 0.200 0.800 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.536 9.291 -2.500 10.251 hybrid contribution -0.581 -0.066 1.028 1.182 sum 2.955 9.225 -1.473 9.798 Atomic orbital electron populations 1.23295 0.76748 1.04399 1.02041 1.85994 1.21678 1.24696 1.94307 1.18971 0.96422 0.85720 0.91586 1.20831 1.01542 0.96364 0.94802 1.25258 0.90650 1.05849 0.98195 1.86528 1.24257 1.33898 1.90856 0.85079 0.77675 0.80199 0.75336 1.17693 1.20299 1.14314 1.21696 0.95814 0.92574 1.01321 1.21575 0.97868 1.01636 0.89464 1.21907 0.96854 0.91612 1.03205 1.18980 1.06424 0.96268 0.81009 1.85677 1.61287 1.75367 1.40386 1.06135 0.75119 0.77205 0.74441 1.93632 1.76665 1.72008 1.54979 1.93576 1.71755 1.72328 1.59632 1.30813 1.13788 1.17172 1.13556 1.21220 0.96191 0.99530 0.99072 1.26191 1.09202 1.04011 1.09870 0.78311 0.65309 0.65317 0.65029 1.26445 1.09631 1.11811 1.10133 1.26240 1.10630 1.12757 1.07105 1.26477 1.08054 1.09014 1.14685 0.87990 0.93656 0.90614 0.87727 0.76110 0.81726 0.79205 0.79972 0.81540 0.81264 0.90002 0.89863 0.88274 0.88552 0.90801 0.91634 0.91706 0.90985 0.91738 0.90842 0.91743 0.91627 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.13 113.37 1.26 1.46 16 2 O -0.35 -4.34 9.37 -79.25 -0.74 -5.09 16 3 C 0.12 0.92 5.08 22.57 0.11 1.03 16 4 C -0.13 -0.19 5.27 -19.78 -0.10 -0.29 16 5 C -0.09 -0.05 2.38 71.23 0.17 0.12 16 6 O -0.55 -0.07 11.54 -148.98 -1.72 -1.79 16 7 Si 1.00 -3.86 25.49 68.60 1.75 -2.12 16 8 H -0.25 0.68 7.11 99.48 0.71 1.39 16 9 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 10 H -0.22 1.89 6.73 99.48 0.67 2.56 16 11 C -0.10 0.54 8.65 22.27 0.19 0.74 16 12 C -0.09 0.79 10.04 22.28 0.22 1.02 16 13 C -0.12 0.62 8.44 22.35 0.19 0.81 16 14 C 0.02 0.07 4.75 22.57 0.11 0.17 16 15 O -0.67 -4.91 9.84 -60.57 -0.60 -5.50 16 16 S 2.57 19.95 5.16 -56.49 -0.29 19.66 16 17 O -0.97 -13.56 16.33 -118.50 -1.93 -15.50 16 18 O -0.97 -15.22 18.09 -118.57 -2.15 -17.37 16 19 C -0.62 2.89 5.10 71.98 0.37 3.26 16 20 C -0.12 0.42 4.59 30.60 0.14 0.56 16 21 C -0.41 3.22 4.45 71.98 0.32 3.54 16 22 Si 1.07 -7.23 12.19 68.60 0.84 -6.40 16 23 C -0.47 1.38 8.65 113.37 0.98 2.36 16 24 C -0.46 2.35 8.65 113.37 0.98 3.34 16 25 C -0.48 1.13 8.65 113.37 0.98 2.11 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.08 0.32 6.76 -2.39 -0.02 0.30 16 29 H 0.10 0.43 7.82 -2.39 -0.02 0.41 16 30 H 0.39 -3.21 8.70 -74.06 -0.64 -3.85 16 31 H 0.17 -1.83 4.88 -2.91 -0.01 -1.85 16 32 H 0.19 -3.31 8.06 -2.91 -0.02 -3.33 16 33 H 0.18 -2.42 7.10 -2.91 -0.02 -2.44 16 34 H 0.17 -1.76 6.62 -2.39 -0.02 -1.77 16 35 H 0.17 -1.76 8.14 -2.39 -0.02 -1.78 16 36 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 37 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 38 H 0.10 -1.06 7.96 -2.39 -0.02 -1.08 16 39 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16 40 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 41 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 42 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 43 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 44 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 46 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 47 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 48 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 Total: 0.00 -29.90 402.00 2.11 -27.80 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: 1.03 Total: -13.93 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.92 Total: 20.22 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -7.14 Total: -45.24 kcal Atomic # 14 Polarization: -11.10 SS G_CDS: 2.59 Total: -8.51 kcal Atomic # 16 Polarization: 19.95 SS G_CDS: -0.29 Total: 19.66 kcal Total: -29.90 2.11 -27.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.065 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds