Wall clock time and date at job start Mon Mar 8 2021 10:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.46958 * 2 1 4 4 C 1.34230 * 116.99761 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00268 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99762 * 180.02562 * 4 3 2 7 7 H 1.09001 * 112.85258 * 311.19543 * 6 4 3 8 8 C 1.53782 * 113.68945 * 82.46315 * 6 4 3 9 9 C 1.53788 * 87.07986 * 139.99108 * 8 6 4 10 10 F 1.39896 * 113.69223 * 220.00609 * 9 8 6 11 11 C 1.53000 * 113.61191 * 89.11808 * 9 8 6 12 12 S 1.81394 * 109.47461 * 82.50354 * 11 9 8 13 13 O 1.42103 * 110.54130 * 68.37374 * 12 11 9 14 14 O 1.42102 * 110.54019 * 291.62391 * 12 11 9 15 15 O 1.52203 * 104.45044 * 179.97438 * 12 11 9 16 16 C 1.35994 * 113.99777 * 75.00134 * 15 12 11 17 17 C 1.39160 * 120.07007 * 270.27136 * 16 15 12 18 18 O 1.35993 * 120.07340 * 0.02562 * 17 16 15 19 19 C 1.42898 * 116.99990 * 270.23020 * 18 17 16 20 20 C 1.38564 * 119.85207 * 180.23465 * 17 16 15 21 21 C 1.50702 * 120.00064 * 179.79845 * 20 17 16 22 22 O 1.42892 * 109.47242 * 74.71914 * 21 20 17 23 23 Si 1.86298 * 109.46915 * 194.72453 * 21 20 17 24 24 C 1.38242 * 119.99944 * 359.51773 * 20 17 16 25 25 C 1.38259 * 120.14682 * 0.22950 * 24 20 17 26 26 C 1.38240 * 120.14476 * 0.02562 * 25 24 20 27 27 C 1.53777 * 87.08091 * 334.56712 * 9 8 6 28 28 H 1.08999 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47432 * 299.99429 * 1 2 3 30 30 H 1.09005 * 109.47476 * 59.99499 * 1 2 3 31 31 H 1.09008 * 109.47182 * 240.00684 * 2 1 3 32 32 H 1.08997 * 109.47398 * 120.00132 * 2 1 3 33 33 H 1.08996 * 113.61694 * 25.44812 * 8 6 4 34 34 H 1.08997 * 113.61460 * 254.53925 * 8 6 4 35 35 H 1.09006 * 109.47140 * 322.50042 * 11 9 8 36 36 H 1.09004 * 109.46716 * 202.50627 * 11 9 8 37 37 H 1.08998 * 109.47306 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.46973 * 299.99945 * 19 18 17 39 39 H 1.08997 * 109.47352 * 60.00084 * 19 18 17 40 40 H 1.09000 * 109.46724 * 314.71960 * 21 20 17 41 41 H 0.96703 * 114.00176 * 180.02562 * 22 21 20 42 42 H 1.48506 * 109.99834 * 178.68053 * 23 21 20 43 43 H 1.48502 * 110.00011 * 299.99318 * 23 21 20 44 44 H 1.08003 * 119.92640 * 180.25394 * 24 20 17 45 45 H 1.07998 * 119.92590 * 180.02562 * 25 24 20 46 46 H 1.07998 * 119.99950 * 180.02562 * 26 25 24 47 47 H 1.08995 * 113.61491 * 139.97906 * 27 9 8 48 48 H 1.08999 * 113.61750 * 270.88352 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4707 3.5819 -0.7552 8 6 3.9868 3.5782 1.3964 9 6 5.3568 4.1434 0.9859 10 9 6.3114 4.1012 2.0078 11 6 5.2763 5.5108 0.3042 12 16 5.1609 6.8094 1.5654 13 8 6.3793 6.9109 2.2897 14 8 3.9116 6.7405 2.2392 15 8 5.0883 8.1054 0.7706 16 6 3.8821 8.3269 0.1828 17 6 3.6348 7.8522 -1.1017 18 8 4.5985 7.1653 -1.7717 19 6 5.5000 7.9294 -2.5751 20 6 2.4059 8.0847 -1.6982 21 6 2.1360 7.5760 -3.0909 22 8 1.9269 6.1631 -3.0498 23 14 0.6157 8.4094 -3.7726 24 6 1.4254 8.7782 -1.0136 25 6 1.6693 9.2453 0.2646 26 6 2.8950 9.0213 0.8635 27 6 5.4582 2.9682 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.0393 2.8524 2.2079 34 1 3.2298 4.3449 1.5613 35 1 4.3947 5.5464 -0.3358 36 1 6.1701 5.6689 -0.2994 37 1 6.2159 7.2611 -3.0536 38 1 4.9390 8.4674 -3.3392 39 1 6.0325 8.6424 -1.9458 40 1 2.9900 7.7985 -3.7307 41 1 1.7477 5.7667 -3.9134 42 1 0.3570 7.9399 -5.1576 43 1 -0.5558 8.1138 -2.9091 44 1 0.4666 8.9551 -1.4781 45 1 0.9007 9.7863 0.7964 46 1 3.0829 9.3869 1.8622 47 1 5.8889 3.2424 -0.9636 48 1 5.9129 2.0755 0.4288 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:13:47 Heat of formation + Delta-G solvation = -231.214590 kcal Electronic energy + Delta-G solvation = -39694.935982 eV Core-core repulsion = 34340.666796 eV Total energy + Delta-G solvation = -5354.269186 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.15820 -42.62022 -41.96926 -40.26107 -39.63368 -38.65948 -38.47312 -37.65584 -37.55375 -37.43974 -32.79918 -32.69559 -31.63993 -31.21072 -28.22133 -27.38040 -27.13664 -26.71979 -24.70791 -24.05576 -23.04812 -22.49642 -21.65529 -20.45065 -19.78324 -19.48079 -19.09853 -18.75862 -18.60552 -18.47558 -18.08307 -17.77025 -17.40039 -17.01914 -16.96070 -16.65078 -16.36809 -16.12770 -15.96993 -15.69694 -15.61145 -15.46176 -15.25795 -14.92353 -14.51527 -14.32990 -14.25743 -14.17052 -13.94628 -13.72976 -13.70115 -13.61933 -13.54897 -13.52380 -13.35205 -13.17665 -13.08776 -13.00649 -12.79537 -12.64192 -12.55557 -12.51885 -12.20207 -12.07516 -11.79587 -11.62180 -11.57184 -11.50188 -11.21998 -10.43850 -10.17067 -9.95440 -4.89210 -1.32988 -0.22358 -0.12946 0.80173 0.92883 1.28676 1.49529 1.63061 1.96890 2.09473 2.23048 2.47632 2.56028 2.71901 2.77750 2.89061 3.09613 3.18083 3.26603 3.49232 3.64809 3.72687 3.82221 3.88980 3.93168 3.99420 3.99916 4.02589 4.07263 4.15915 4.27413 4.29712 4.35579 4.37526 4.43420 4.48204 4.50705 4.53955 4.67339 4.71037 4.78187 4.83562 4.85568 4.89567 4.96367 5.08199 5.08827 5.15120 5.35090 5.43746 6.14670 6.54358 6.62182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.476 3.524 5 O -0.532 6.532 6 C -0.098 4.098 7 H 0.162 0.838 8 C -0.153 4.153 9 C 0.091 3.909 10 F -0.201 7.201 11 C -0.634 4.634 12 S 2.592 3.408 13 O -0.958 6.958 14 O -0.961 6.961 15 O -0.657 6.657 16 C 0.014 3.986 17 C 0.107 3.893 18 O -0.337 6.337 19 C 0.016 3.984 20 C -0.084 4.084 21 C -0.078 4.078 22 O -0.546 6.546 23 Si 0.761 3.239 24 C -0.083 4.083 25 C -0.092 4.092 26 C -0.086 4.086 27 C -0.114 4.114 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.396 0.604 42 H -0.288 1.288 43 H -0.282 1.282 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.151 0.849 47 H 0.123 0.877 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 5.184 -9.271 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.320 3.680 5 O -0.422 6.422 6 C -0.116 4.116 7 H 0.179 0.821 8 C -0.190 4.190 9 C 0.072 3.928 10 F -0.182 7.182 11 C -0.762 4.762 12 S 2.690 3.310 13 O -0.956 6.956 14 O -0.960 6.960 15 O -0.616 6.616 16 C -0.028 4.028 17 C 0.061 3.939 18 O -0.255 6.255 19 C -0.077 4.077 20 C -0.084 4.084 21 C -0.186 4.186 22 O -0.356 6.356 23 Si 0.666 3.334 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.107 4.107 27 C -0.153 4.153 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.201 0.799 36 H 0.199 0.801 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.246 0.754 42 H -0.215 1.215 43 H -0.209 1.209 44 H 0.181 0.819 45 H 0.196 0.804 46 H 0.169 0.831 47 H 0.142 0.858 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.592 5.122 -8.288 11.764 hybrid contribution 0.898 -1.740 -0.407 2.000 sum -5.694 3.383 -8.695 10.930 Atomic orbital electron populations 1.21831 0.90647 1.04317 1.03760 1.23304 0.96979 0.79125 1.02668 1.86530 1.23872 1.33717 1.83261 1.23598 0.80763 0.92317 0.71276 1.90679 1.61120 1.43880 1.46471 1.22367 0.97175 0.91018 1.01077 0.82088 1.23894 0.95956 1.02150 0.97039 1.21846 0.88518 0.94793 0.87686 1.92956 1.66591 1.97385 1.61243 1.31049 1.17198 1.09442 1.18516 1.05451 0.73968 0.75544 0.75995 1.93621 1.47904 1.84671 1.69435 1.93613 1.44462 1.85115 1.72789 1.85722 1.41708 1.60367 1.73822 1.18855 0.81889 1.07570 0.94512 1.18636 0.90551 0.95492 0.89223 1.86040 1.42668 1.33707 1.63042 1.23458 0.92260 0.97829 0.94170 1.19724 0.92895 0.99153 0.96668 1.24890 1.11433 0.86433 0.95880 1.86551 1.93347 1.18919 1.36757 0.94197 0.74310 0.89111 0.75827 1.21653 0.99130 0.94766 0.94563 1.21491 0.96081 0.98795 0.94630 1.21655 0.92642 0.95317 1.01059 1.23569 0.93688 0.96745 1.01257 0.88433 0.91379 0.91126 0.91024 0.91397 0.87165 0.86673 0.79867 0.80086 0.86088 0.91025 0.93052 0.88731 0.75372 1.21498 1.20896 0.81910 0.80379 0.83135 0.85833 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 10.29 71.98 0.74 1.17 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.65 10.22 -51.41 -0.53 -2.18 16 4 C 0.48 2.64 7.49 71.24 0.53 3.18 16 5 O -0.53 -5.99 15.65 21.99 0.34 -5.64 16 6 C -0.10 -0.02 3.91 -11.01 -0.04 -0.06 16 7 H 0.16 -0.75 7.65 -2.39 -0.02 -0.77 16 8 C -0.15 -0.35 7.09 31.12 0.22 -0.12 16 9 C 0.09 0.30 1.79 -10.27 -0.02 0.28 16 10 F -0.20 -2.04 16.31 44.97 0.73 -1.30 16 11 C -0.63 -0.25 4.10 71.98 0.29 0.05 16 12 S 2.59 21.23 4.89 -56.49 -0.28 20.96 16 13 O -0.96 -15.77 17.53 -118.57 -2.08 -17.85 16 14 O -0.96 -10.07 15.69 -118.57 -1.86 -11.93 16 15 O -0.66 -3.80 9.84 -60.50 -0.60 -4.40 16 16 C 0.01 0.04 4.81 22.57 0.11 0.14 16 17 C 0.11 -0.09 4.85 22.57 0.11 0.01 16 18 O -0.34 1.14 6.73 -79.60 -0.54 0.61 16 19 C 0.02 -0.12 10.91 113.37 1.24 1.11 16 20 C -0.08 0.31 5.30 -19.78 -0.10 0.20 16 21 C -0.08 0.54 2.36 71.24 0.17 0.71 16 22 O -0.55 2.53 12.86 -148.98 -1.92 0.61 16 23 Si 0.76 -6.31 30.20 68.60 2.07 -4.24 16 24 C -0.08 0.49 8.66 22.28 0.19 0.68 16 25 C -0.09 0.51 10.04 22.28 0.22 0.73 16 26 C -0.09 0.00 9.05 22.35 0.20 0.20 16 27 C -0.11 -0.05 6.89 31.12 0.21 0.17 16 28 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 31 H 0.07 0.11 8.13 -2.38 -0.02 0.09 16 32 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 33 H 0.11 0.31 8.10 -2.39 -0.02 0.29 16 34 H 0.11 0.12 7.51 -2.39 -0.02 0.10 16 35 H 0.18 -0.62 5.18 -2.39 -0.01 -0.63 16 36 H 0.18 -0.84 8.09 -2.39 -0.02 -0.86 16 37 H 0.12 -1.40 8.14 -2.39 -0.02 -1.42 16 38 H 0.07 -0.78 7.10 -2.39 -0.02 -0.80 16 39 H 0.05 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.09 -1.00 6.56 -2.39 -0.02 -1.01 16 41 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 42 H -0.29 0.88 7.11 99.48 0.71 1.59 16 43 H -0.28 0.79 6.75 99.48 0.67 1.46 16 44 H 0.16 -1.62 4.89 -2.91 -0.01 -1.63 16 45 H 0.18 -2.11 8.06 -2.91 -0.02 -2.14 16 46 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 47 H 0.12 -0.57 8.10 -2.39 -0.02 -0.59 16 48 H 0.11 0.38 7.44 -2.39 -0.02 0.36 16 Total: 0.00 -29.27 409.94 0.26 -29.01 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: 0.38 Total: -12.64 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.52 Total: 8.99 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -7.17 Total: -40.77 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.73 Total: -1.30 kcal Atomic # 14 Polarization: -6.31 SS G_CDS: 2.07 Total: -4.24 kcal Atomic # 16 Polarization: 21.23 SS G_CDS: -0.28 Total: 20.96 kcal Total: -29.27 0.26 -29.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.209 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds