Wall clock time and date at job start Mon Mar 8 2021 10:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35998 * 116.99749 * 2 1 4 4 C 1.39155 * 120.07228 * 90.00046 * 3 2 1 5 5 O 1.36003 * 120.07119 * 359.97438 * 4 3 2 6 6 S 1.52196 * 114.00136 * 90.00107 * 5 4 3 7 7 O 1.42108 * 104.27388 * 318.92328 * 6 5 4 8 8 O 1.42099 * 104.27438 * 191.07361 * 6 5 4 9 9 C 1.81392 * 104.45353 * 74.99671 * 6 5 4 10 10 H 1.09006 * 112.84772 * 53.80213 * 9 6 5 11 11 C 1.53785 * 113.61554 * 184.99931 * 9 6 5 12 12 C 1.53786 * 87.07804 * 140.06505 * 11 9 6 13 13 H 1.09000 * 113.61092 * 219.93157 * 12 11 9 14 14 O 1.42897 * 113.61005 * 89.11897 * 12 11 9 15 15 C 1.42905 * 113.99732 * 149.99699 * 14 12 11 16 16 C 1.50701 * 109.47046 * 179.97438 * 15 14 12 17 17 C 1.38234 * 120.00243 * 89.99998 * 16 15 14 18 18 C 1.38234 * 120.00240 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 20 20 C 1.38238 * 119.99752 * 359.47832 * 19 18 17 21 21 C 1.38234 * 120.00005 * 0.52168 * 20 19 18 22 22 C 1.53779 * 113.69048 * 282.53840 * 9 6 5 23 23 C 1.38563 * 119.85827 * 180.25429 * 4 3 2 24 24 C 1.38245 * 119.99142 * 359.42355 * 23 4 3 25 25 C 1.38251 * 120.14939 * 0.60587 * 24 23 4 26 26 C 1.38244 * 120.14479 * 359.66899 * 25 24 23 27 27 C 1.50703 * 119.99978 * 180.02562 * 26 25 24 28 28 O 1.42902 * 109.47130 * 104.97784 * 27 26 25 29 29 Si 1.86302 * 109.47100 * 344.98257 * 27 26 25 30 30 H 1.08997 * 109.46937 * 299.99581 * 1 2 3 31 31 H 1.08997 * 109.47149 * 60.00144 * 1 2 3 32 32 H 1.09002 * 109.46694 * 179.97438 * 1 2 3 33 33 H 1.08994 * 113.60972 * 25.51684 * 11 9 6 34 34 H 1.08994 * 113.68862 * 254.62397 * 11 9 6 35 35 H 1.08996 * 109.47095 * 59.99642 * 15 14 12 36 36 H 1.08999 * 109.47350 * 299.99578 * 15 14 12 37 37 H 1.07999 * 119.99751 * 359.97438 * 17 16 15 38 38 H 1.08002 * 119.99744 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 40 40 H 1.07999 * 119.99927 * 180.24100 * 20 19 18 41 41 H 1.08001 * 120.00310 * 179.72165 * 21 20 19 42 42 H 1.08995 * 113.61833 * 105.45871 * 22 9 6 43 43 H 1.09001 * 113.61377 * 334.54915 * 22 9 6 44 44 H 1.07995 * 120.00735 * 179.72572 * 23 4 3 45 45 H 1.08000 * 119.92713 * 180.29517 * 24 23 4 46 46 H 1.07999 * 119.92599 * 179.69975 * 25 24 23 47 47 H 1.08992 * 109.47279 * 224.98068 * 27 26 25 48 48 H 0.96695 * 114.00257 * 300.00203 * 28 27 26 49 49 H 1.48498 * 110.00015 * 180.02562 * 29 27 26 50 50 H 1.48500 * 109.99741 * 301.31826 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3630 1.8331 1.2042 5 8 2.0551 1.2300 2.3838 6 16 3.1536 0.3239 2.9210 7 8 3.6410 -0.3552 1.7717 8 8 2.5332 -0.3868 3.9836 9 6 4.4075 1.4655 3.5652 10 1 4.0006 2.1825 4.2783 11 6 5.6845 0.7640 4.0574 12 6 6.4713 1.9228 3.4224 13 1 7.3854 1.6062 2.9200 14 8 6.6776 3.0265 4.3062 15 6 7.8807 3.7555 4.0547 16 6 7.9953 4.8908 5.0391 17 6 8.6394 4.6962 6.2467 18 6 8.7441 5.7374 7.1499 19 6 8.1999 6.9717 6.8479 20 6 7.5605 7.1679 5.6381 21 6 7.4558 6.1267 4.7348 22 6 5.2767 2.1094 2.4722 23 6 2.9872 3.0701 1.1991 24 6 3.3049 3.6788 -0.0008 25 6 2.9899 3.0619 -1.1972 26 6 2.3620 1.8303 -1.1990 27 6 2.0206 1.1604 -2.5051 28 8 2.9352 0.0887 -2.7441 29 14 2.1424 2.4009 -3.8897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 5.8649 -0.1993 3.5804 34 1 5.7700 0.7214 5.1431 35 1 7.8582 4.1551 3.0408 36 1 8.7378 3.0912 4.1644 37 1 9.0601 3.7305 6.4848 38 1 9.2469 5.5852 8.0935 39 1 8.2778 7.7840 7.5554 40 1 7.1387 8.1333 5.4005 41 1 6.9523 6.2786 3.7915 42 1 5.0319 3.1537 2.2784 43 1 5.3457 1.5138 1.5619 44 1 3.2300 3.5565 2.1322 45 1 3.7957 4.6409 -0.0036 46 1 3.2354 3.5429 -2.1325 47 1 1.0050 0.7676 -2.4575 48 1 3.8600 0.3655 -2.7986 49 1 1.8076 1.7529 -5.1832 50 1 1.2193 3.5363 -3.6370 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:20:31 Heat of formation + Delta-G solvation = -107.085805 kcal Electronic energy + Delta-G solvation = -37884.055633 eV Core-core repulsion = 32938.626821 eV Total energy + Delta-G solvation = -4945.428811 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.126 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.53086 -40.88933 -40.16756 -40.04424 -38.56688 -38.14579 -37.47766 -37.10853 -36.98801 -32.81762 -32.63204 -31.88891 -31.26817 -28.29009 -27.67428 -27.29881 -26.71788 -26.41957 -24.60365 -23.57777 -23.14688 -22.37484 -21.74773 -21.02963 -19.66019 -19.23566 -18.86968 -18.46669 -18.22781 -17.82843 -17.43090 -17.39182 -16.81266 -16.74061 -16.61544 -16.45117 -16.11397 -15.90313 -15.63106 -15.46725 -15.38806 -15.31884 -14.78872 -14.51580 -14.39427 -14.24606 -14.21534 -13.97201 -13.91793 -13.71528 -13.59960 -13.54605 -13.34581 -13.27739 -13.17538 -13.07686 -12.96172 -12.70143 -12.26862 -12.16369 -12.13488 -11.97438 -11.92889 -11.85379 -11.29292 -11.13600 -10.73520 -10.44857 -10.17600 -9.93566 -9.90133 -9.84761 -5.16915 -1.02554 -0.23397 -0.15916 0.24656 0.42244 1.02473 1.17484 1.52772 1.87843 2.00341 2.29529 2.48854 2.60966 2.78267 2.91127 3.09798 3.19267 3.29354 3.34470 3.48213 3.58597 3.62314 3.70895 3.78746 3.79503 3.84924 3.93373 4.00567 4.04381 4.13391 4.15920 4.19593 4.20125 4.26061 4.29525 4.30165 4.43928 4.45630 4.52871 4.57676 4.64052 4.66975 4.68149 4.68709 4.77057 4.80902 4.94062 4.96802 4.98572 5.04162 5.31160 5.45864 5.54032 5.55979 5.98054 6.04328 6.30496 6.58356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.155 3.845 4 C 0.045 3.955 5 O -0.659 6.659 6 S 2.592 3.408 7 O -0.929 6.929 8 O -0.926 6.926 9 C -0.640 4.640 10 H 0.159 0.841 11 C -0.109 4.109 12 C 0.080 3.920 13 H 0.089 0.911 14 O -0.356 6.356 15 C 0.102 3.898 16 C -0.095 4.095 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.082 4.082 26 C -0.131 4.131 27 C -0.064 4.064 28 O -0.525 6.525 29 Si 0.687 3.313 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.112 0.888 48 H 0.378 0.622 49 H -0.250 1.250 50 H -0.254 1.254 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.132 7.213 -2.728 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.108 3.892 4 C 0.003 3.997 5 O -0.618 6.618 6 S 2.687 3.313 7 O -0.927 6.927 8 O -0.925 6.925 9 C -0.746 4.746 10 H 0.177 0.823 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.107 0.893 14 O -0.275 6.275 15 C 0.026 3.974 16 C -0.096 4.096 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.175 4.175 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.101 4.101 26 C -0.132 4.132 27 C -0.174 4.174 28 O -0.330 6.330 29 Si 0.588 3.412 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.129 0.871 48 H 0.225 0.775 49 H -0.174 1.174 50 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges 3.550 6.544 -3.249 8.123 hybrid contribution -0.208 0.242 1.017 1.066 sum 3.343 6.786 -2.232 7.887 Atomic orbital electron populations 1.23178 0.77915 1.04415 1.00996 1.86190 1.20016 1.22797 1.94024 1.18524 0.95012 0.85593 0.90027 1.18464 1.06069 0.94363 0.80813 1.85710 1.63281 1.70840 1.41922 1.05735 0.74951 0.75342 0.75244 1.93701 1.80980 1.71166 1.46881 1.93641 1.72865 1.68479 1.57465 1.32210 1.14238 1.16932 1.11263 0.82294 1.22867 0.90444 0.97412 1.04056 1.22820 0.97047 0.87276 0.90824 0.89323 1.87983 1.41519 1.42627 1.55362 1.21441 0.87333 0.91655 0.97003 1.19554 1.00121 0.94156 0.95726 1.21094 0.98421 0.99071 0.93021 1.21207 0.99990 0.93238 0.99638 1.21274 0.97365 0.97444 0.96916 1.21196 0.99611 0.99129 0.94225 1.21060 0.98332 0.92579 0.99699 1.23505 0.95066 1.03102 0.95804 1.21445 0.97578 0.92771 1.00855 1.21037 1.00133 1.00725 0.90533 1.21153 0.96413 0.93537 0.98968 1.20731 1.01644 0.95295 0.95505 1.25071 0.96528 0.97321 0.98483 1.86606 1.19838 1.32461 1.94119 0.95002 0.90605 0.78028 0.77591 0.92765 0.93245 0.87776 0.87560 0.88112 0.91954 0.91927 0.85871 0.85725 0.85817 0.85754 0.85933 0.88305 0.86934 0.83269 0.83381 0.83804 0.87078 0.77475 1.17430 1.17832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.91 101.05 1.10 1.15 16 2 O -0.31 -1.49 9.02 -41.55 -0.37 -1.87 16 3 C 0.16 0.44 4.94 -39.12 -0.19 0.24 16 4 C 0.05 0.08 4.63 -39.12 -0.18 -0.10 16 5 O -0.66 -2.18 9.84 -54.25 -0.53 -2.72 16 6 S 2.59 8.85 5.15 -107.50 -0.55 8.30 16 7 O -0.93 -4.81 15.14 -68.54 -1.04 -5.85 16 8 O -0.93 -6.70 18.09 -67.04 -1.21 -7.92 16 9 C -0.64 0.28 3.91 -25.92 -0.10 0.18 16 10 H 0.16 -0.22 8.14 -51.93 -0.42 -0.64 16 11 C -0.11 0.10 7.50 -25.91 -0.19 -0.09 16 12 C 0.08 -0.14 4.38 -25.92 -0.11 -0.25 16 13 H 0.09 -0.31 7.87 -51.93 -0.41 -0.72 16 14 O -0.36 0.03 10.25 -35.23 -0.36 -0.33 16 15 C 0.10 -0.15 5.90 36.01 0.21 0.07 16 16 C -0.10 -0.01 5.51 -104.62 -0.58 -0.59 16 17 C -0.10 -0.03 9.70 -39.58 -0.38 -0.41 16 18 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 19 C -0.11 0.00 10.05 -39.58 -0.40 -0.39 16 20 C -0.12 0.02 10.05 -39.58 -0.40 -0.37 16 21 C -0.10 0.02 9.70 -39.58 -0.38 -0.36 16 22 C -0.14 0.31 5.16 -25.92 -0.13 0.17 16 23 C -0.11 0.18 6.71 -39.46 -0.26 -0.08 16 24 C -0.11 0.39 10.04 -39.57 -0.40 -0.01 16 25 C -0.08 0.24 8.66 -39.57 -0.34 -0.10 16 26 C -0.13 -0.01 5.27 -104.50 -0.55 -0.56 16 27 C -0.06 0.00 2.38 36.01 0.09 0.09 16 28 O -0.53 -0.58 12.88 -35.23 -0.45 -1.03 16 29 Si 0.69 -1.48 29.92 -169.99 -5.09 -6.56 16 30 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.05 0.00 7.10 -51.93 -0.37 -0.37 16 32 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.11 -0.22 8.10 -51.93 -0.42 -0.64 16 34 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.06 -0.19 8.08 -51.93 -0.42 -0.61 16 36 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 37 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 38 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 39 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 40 H 0.12 -0.25 8.06 -52.49 -0.42 -0.67 16 41 H 0.12 -0.25 8.06 -52.49 -0.42 -0.68 16 42 H 0.10 -0.38 5.97 -51.93 -0.31 -0.69 16 43 H 0.11 -0.29 7.54 -51.93 -0.39 -0.68 16 44 H 0.15 -0.58 6.60 -52.49 -0.35 -0.93 16 45 H 0.15 -1.00 8.06 -52.49 -0.42 -1.43 16 46 H 0.14 -0.86 5.12 -52.49 -0.27 -1.13 16 47 H 0.11 0.09 6.55 -51.93 -0.34 -0.25 16 48 H 0.38 -1.23 8.70 45.56 0.40 -0.83 16 49 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 50 H -0.25 0.04 7.11 56.52 0.40 0.44 16 LS Contribution 420.57 15.07 6.34 6.34 Total: 0.00 -13.22 420.57 -13.61 -26.83 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: -6.72 Total: -13.36 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.61 Total: -1.84 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -3.97 Total: -19.70 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -5.09 Total: -6.56 kcal Atomic # 16 Polarization: 8.85 SS G_CDS: -0.55 Total: 8.30 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -13.22 -13.61 -26.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.255 kcal (2) G-P(sol) polarization free energy of solvation -13.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds