Wall clock time and date at job start Mon Mar 8 2021 10:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35998 * 116.99749 * 2 1 4 4 C 1.39155 * 120.07228 * 90.00046 * 3 2 1 5 5 O 1.36003 * 120.07119 * 359.97438 * 4 3 2 6 6 S 1.52196 * 114.00136 * 90.00107 * 5 4 3 7 7 O 1.42108 * 104.27388 * 318.92328 * 6 5 4 8 8 O 1.42099 * 104.27438 * 191.07361 * 6 5 4 9 9 C 1.81392 * 104.45353 * 74.99671 * 6 5 4 10 10 H 1.09006 * 112.84772 * 53.80213 * 9 6 5 11 11 C 1.53785 * 113.61554 * 184.99931 * 9 6 5 12 12 C 1.53786 * 87.07804 * 140.06505 * 11 9 6 13 13 H 1.09000 * 113.61092 * 219.93157 * 12 11 9 14 14 O 1.42897 * 113.61005 * 89.11897 * 12 11 9 15 15 C 1.42905 * 113.99732 * 149.99699 * 14 12 11 16 16 C 1.50701 * 109.47046 * 179.97438 * 15 14 12 17 17 C 1.38234 * 120.00243 * 89.99998 * 16 15 14 18 18 C 1.38234 * 120.00240 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 20 20 C 1.38238 * 119.99752 * 359.47832 * 19 18 17 21 21 C 1.38234 * 120.00005 * 0.52168 * 20 19 18 22 22 C 1.53779 * 113.69048 * 282.53840 * 9 6 5 23 23 C 1.38563 * 119.85827 * 180.25429 * 4 3 2 24 24 C 1.38245 * 119.99142 * 359.42355 * 23 4 3 25 25 C 1.38251 * 120.14939 * 0.60587 * 24 23 4 26 26 C 1.38244 * 120.14479 * 359.66899 * 25 24 23 27 27 C 1.50703 * 119.99978 * 180.02562 * 26 25 24 28 28 O 1.42902 * 109.47130 * 104.97784 * 27 26 25 29 29 Si 1.86302 * 109.47100 * 344.98257 * 27 26 25 30 30 H 1.08997 * 109.46937 * 299.99581 * 1 2 3 31 31 H 1.08997 * 109.47149 * 60.00144 * 1 2 3 32 32 H 1.09002 * 109.46694 * 179.97438 * 1 2 3 33 33 H 1.08994 * 113.60972 * 25.51684 * 11 9 6 34 34 H 1.08994 * 113.68862 * 254.62397 * 11 9 6 35 35 H 1.08996 * 109.47095 * 59.99642 * 15 14 12 36 36 H 1.08999 * 109.47350 * 299.99578 * 15 14 12 37 37 H 1.07999 * 119.99751 * 359.97438 * 17 16 15 38 38 H 1.08002 * 119.99744 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 40 40 H 1.07999 * 119.99927 * 180.24100 * 20 19 18 41 41 H 1.08001 * 120.00310 * 179.72165 * 21 20 19 42 42 H 1.08995 * 113.61833 * 105.45871 * 22 9 6 43 43 H 1.09001 * 113.61377 * 334.54915 * 22 9 6 44 44 H 1.07995 * 120.00735 * 179.72572 * 23 4 3 45 45 H 1.08000 * 119.92713 * 180.29517 * 24 23 4 46 46 H 1.07999 * 119.92599 * 179.69975 * 25 24 23 47 47 H 1.08992 * 109.47279 * 224.98068 * 27 26 25 48 48 H 0.96695 * 114.00257 * 300.00203 * 28 27 26 49 49 H 1.48498 * 110.00015 * 180.02562 * 29 27 26 50 50 H 1.48500 * 109.99741 * 301.31826 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3630 1.8331 1.2042 5 8 2.0551 1.2300 2.3838 6 16 3.1536 0.3239 2.9210 7 8 3.6410 -0.3552 1.7717 8 8 2.5332 -0.3868 3.9836 9 6 4.4075 1.4655 3.5652 10 1 4.0006 2.1825 4.2783 11 6 5.6845 0.7640 4.0574 12 6 6.4713 1.9228 3.4224 13 1 7.3854 1.6062 2.9200 14 8 6.6776 3.0265 4.3062 15 6 7.8807 3.7555 4.0547 16 6 7.9953 4.8908 5.0391 17 6 8.6394 4.6962 6.2467 18 6 8.7441 5.7374 7.1499 19 6 8.1999 6.9717 6.8479 20 6 7.5605 7.1679 5.6381 21 6 7.4558 6.1267 4.7348 22 6 5.2767 2.1094 2.4722 23 6 2.9872 3.0701 1.1991 24 6 3.3049 3.6788 -0.0008 25 6 2.9899 3.0619 -1.1972 26 6 2.3620 1.8303 -1.1990 27 6 2.0206 1.1604 -2.5051 28 8 2.9352 0.0887 -2.7441 29 14 2.1424 2.4009 -3.8897 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 5.8649 -0.1993 3.5804 34 1 5.7700 0.7214 5.1431 35 1 7.8582 4.1551 3.0408 36 1 8.7378 3.0912 4.1644 37 1 9.0601 3.7305 6.4848 38 1 9.2469 5.5852 8.0935 39 1 8.2778 7.7840 7.5554 40 1 7.1387 8.1333 5.4005 41 1 6.9523 6.2786 3.7915 42 1 5.0319 3.1537 2.2784 43 1 5.3457 1.5138 1.5619 44 1 3.2300 3.5565 2.1322 45 1 3.7957 4.6409 -0.0036 46 1 3.2354 3.5429 -2.1325 47 1 1.0050 0.7676 -2.4575 48 1 3.8600 0.3655 -2.7986 49 1 1.8076 1.7529 -5.1832 50 1 1.2193 3.5363 -3.6370 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:20:29 Heat of formation + Delta-G solvation = -110.562466 kcal Electronic energy + Delta-G solvation = -37884.206392 eV Core-core repulsion = 32938.626821 eV Total energy + Delta-G solvation = -4945.579571 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.126 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.54252 -40.76486 -40.21799 -39.93283 -38.58858 -38.44872 -37.46064 -37.30730 -36.97281 -32.70133 -32.52716 -31.78246 -31.19232 -28.34182 -27.59190 -27.17861 -26.61763 -26.33596 -24.59854 -23.47529 -23.04415 -22.25559 -21.76500 -20.96909 -19.74327 -19.22895 -18.96891 -18.55699 -18.19946 -17.74467 -17.39363 -17.30366 -16.78030 -16.70841 -16.57171 -16.38276 -16.03055 -15.86352 -15.65096 -15.42696 -15.40494 -15.28588 -14.75203 -14.41592 -14.30042 -14.25363 -14.18786 -14.07570 -13.80798 -13.64193 -13.50587 -13.48025 -13.39848 -13.33350 -13.22574 -13.14650 -13.10484 -12.73551 -12.19513 -12.06441 -12.03807 -11.87032 -11.82134 -11.71414 -11.34527 -11.16300 -10.56672 -10.40645 -10.05781 -9.83863 -9.81743 -9.75872 -5.01814 -1.13772 -0.12469 -0.08345 0.33662 0.50553 0.94287 1.27346 1.66858 2.00047 2.14889 2.40875 2.44090 2.62859 2.71372 2.98595 3.15248 3.24720 3.32912 3.48788 3.63415 3.67512 3.82901 3.86782 3.94074 3.95313 3.98835 4.10452 4.13222 4.16312 4.17719 4.24024 4.26145 4.31096 4.39262 4.43466 4.44871 4.50774 4.60399 4.62729 4.68700 4.73598 4.78083 4.81915 4.83575 4.90771 4.98122 5.09480 5.12982 5.16244 5.16555 5.53360 5.55517 5.63059 5.65843 6.09993 6.23097 6.24926 6.81366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.346 6.346 3 C 0.116 3.884 4 C 0.014 3.986 5 O -0.671 6.671 6 S 2.585 3.415 7 O -0.957 6.957 8 O -0.984 6.984 9 C -0.617 4.617 10 H 0.171 0.829 11 C -0.124 4.124 12 C 0.084 3.916 13 H 0.112 0.888 14 O -0.373 6.373 15 C 0.100 3.900 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.104 4.104 24 C -0.088 4.088 25 C -0.073 4.073 26 C -0.141 4.141 27 C -0.087 4.087 28 O -0.552 6.552 29 Si 0.807 3.193 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.196 0.804 46 H 0.181 0.819 47 H 0.090 0.910 48 H 0.395 0.605 49 H -0.303 1.303 50 H -0.272 1.272 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 10.626 -3.963 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.263 6.263 3 C 0.070 3.930 4 C -0.027 4.027 5 O -0.630 6.630 6 S 2.686 3.314 7 O -0.956 6.956 8 O -0.983 6.983 9 C -0.728 4.728 10 H 0.189 0.811 11 C -0.163 4.163 12 C 0.025 3.975 13 H 0.129 0.871 14 O -0.292 6.292 15 C 0.024 3.976 16 C -0.107 4.107 17 C -0.133 4.133 18 C -0.156 4.156 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.124 4.124 22 C -0.169 4.169 23 C -0.124 4.124 24 C -0.105 4.105 25 C -0.091 4.091 26 C -0.142 4.142 27 C -0.194 4.194 28 O -0.360 6.360 29 Si 0.710 3.290 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.191 0.809 45 H 0.213 0.787 46 H 0.198 0.802 47 H 0.107 0.893 48 H 0.244 0.756 49 H -0.231 1.231 50 H -0.198 1.198 Dipole moment (debyes) X Y Z Total from point charges 5.510 9.911 -4.455 12.184 hybrid contribution -0.804 -0.785 1.385 1.784 sum 4.706 9.126 -3.070 10.717 Atomic orbital electron populations 1.23271 0.77612 1.04816 1.01361 1.86128 1.20874 1.24964 1.94334 1.18993 0.96559 0.85758 0.91660 1.18923 1.08127 0.95861 0.79828 1.85664 1.63581 1.70899 1.42833 1.05754 0.75354 0.76010 0.74245 1.93648 1.81421 1.72819 1.47691 1.93554 1.74749 1.71146 1.58805 1.32053 1.12364 1.15896 1.12483 0.81092 1.23090 0.90370 0.98530 1.04270 1.22826 0.97970 0.86313 0.90384 0.87053 1.87958 1.42122 1.43067 1.56067 1.21547 0.87149 0.91292 0.97566 1.19836 0.99914 0.95014 0.95947 1.21326 0.98966 0.99465 0.93553 1.21436 1.00396 0.93554 1.00217 1.21528 0.97601 0.97797 0.97568 1.21490 0.99544 1.00028 0.94209 1.21364 0.98207 0.92364 1.00497 1.23645 0.93625 1.04413 0.95194 1.21845 0.96404 0.91165 1.02951 1.21607 0.98226 1.01687 0.89026 1.21593 0.94462 0.91953 1.01073 1.20865 1.02491 0.96552 0.94316 1.25520 0.95508 0.97996 1.00388 1.86555 1.21299 1.33912 1.94255 0.93768 0.88431 0.74636 0.72210 0.93267 0.91927 0.87478 0.86916 0.88363 0.89791 0.91196 0.85300 0.84926 0.84772 0.84276 0.83912 0.85715 0.86450 0.80910 0.78724 0.80248 0.89252 0.75557 1.23141 1.19792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.91 113.37 1.24 1.39 16 2 O -0.35 -4.43 9.02 -72.67 -0.66 -5.09 16 3 C 0.12 0.82 4.94 22.57 0.11 0.93 16 4 C 0.01 0.06 4.63 22.57 0.10 0.17 16 5 O -0.67 -5.89 9.84 -60.60 -0.60 -6.49 16 6 S 2.59 23.56 5.15 -56.49 -0.29 23.27 16 7 O -0.96 -12.49 15.14 -117.13 -1.77 -14.26 16 8 O -0.98 -18.00 18.09 -118.57 -2.15 -20.14 16 9 C -0.62 0.73 3.91 31.12 0.12 0.85 16 10 H 0.17 -0.59 8.14 -2.38 -0.02 -0.61 16 11 C -0.12 0.27 7.50 31.12 0.23 0.50 16 12 C 0.08 -0.49 4.38 31.12 0.14 -0.35 16 13 H 0.11 -1.11 7.87 -2.39 -0.02 -1.13 16 14 O -0.37 0.94 10.25 -148.98 -1.53 -0.59 16 15 C 0.10 -0.53 5.90 71.24 0.42 -0.11 16 16 C -0.11 0.13 5.51 -19.86 -0.11 0.02 16 17 C -0.12 -0.03 9.70 22.27 0.22 0.19 16 18 C -0.14 -0.04 10.05 22.27 0.22 0.19 16 19 C -0.13 0.05 10.05 22.27 0.22 0.28 16 20 C -0.13 0.21 10.05 22.27 0.22 0.43 16 21 C -0.11 0.24 9.70 22.27 0.22 0.46 16 22 C -0.13 0.89 5.16 31.12 0.16 1.06 16 23 C -0.10 0.60 6.71 22.35 0.15 0.75 16 24 C -0.09 1.02 10.04 22.27 0.22 1.24 16 25 C -0.07 0.65 8.66 22.27 0.19 0.85 16 26 C -0.14 0.00 5.27 -19.79 -0.10 -0.10 16 27 C -0.09 -0.06 2.38 71.24 0.17 0.11 16 28 O -0.55 -1.89 12.88 -148.98 -1.92 -3.81 16 29 Si 0.81 -4.40 29.92 68.60 2.05 -2.35 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.18 7.10 -2.39 -0.02 0.17 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 -0.41 8.10 -2.39 -0.02 -0.43 16 34 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.08 -0.82 8.08 -2.39 -0.02 -0.84 16 36 H 0.07 -0.49 8.09 -2.39 -0.02 -0.51 16 37 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 38 H 0.13 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.13 -0.49 8.06 -2.91 -0.02 -0.52 16 40 H 0.14 -0.76 8.06 -2.91 -0.02 -0.78 16 41 H 0.14 -1.03 8.06 -2.91 -0.02 -1.05 16 42 H 0.12 -1.50 5.97 -2.39 -0.01 -1.51 16 43 H 0.12 -0.83 7.54 -2.39 -0.02 -0.85 16 44 H 0.17 -1.93 6.60 -2.91 -0.02 -1.95 16 45 H 0.20 -3.99 8.06 -2.91 -0.02 -4.02 16 46 H 0.18 -2.99 5.12 -2.91 -0.01 -3.00 16 47 H 0.09 0.35 6.55 -2.39 -0.02 0.34 16 48 H 0.39 -2.44 8.70 -74.06 -0.64 -3.09 16 49 H -0.30 -1.00 7.11 99.48 0.71 -0.29 16 50 H -0.27 0.67 7.11 99.48 0.71 1.38 16 Total: 0.00 -37.05 420.57 -2.33 -39.39 By element: Atomic # 1 Polarization: -19.15 SS G_CDS: 0.38 Total: -18.78 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 4.15 Total: 8.86 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -8.62 Total: -50.39 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.05 Total: -2.35 kcal Atomic # 16 Polarization: 23.56 SS G_CDS: -0.29 Total: 23.27 kcal Total: -37.05 -2.33 -39.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.177 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds