Wall clock time and date at job start Mon Mar 8 2021 10:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47262 * 2 1 4 4 C 1.34224 * 117.00297 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00020 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00341 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47565 * 300.00597 * 6 4 3 8 8 C 1.53011 * 109.46761 * 60.00418 * 6 4 3 9 9 C 1.53003 * 109.46614 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47289 * 299.99464 * 9 8 6 11 11 F 1.39906 * 109.47366 * 300.00945 * 10 9 8 12 12 C 1.52998 * 109.47246 * 180.02562 * 10 9 8 13 13 S 1.81399 * 109.47240 * 60.00182 * 12 10 9 14 14 O 1.42105 * 110.54101 * 61.97839 * 13 12 10 15 15 O 1.42098 * 110.54365 * 285.22784 * 13 12 10 16 16 O 1.52196 * 104.45084 * 173.60028 * 13 12 10 17 17 C 1.35991 * 113.99724 * 75.44094 * 16 13 12 18 18 C 1.39157 * 120.07272 * 92.85643 * 17 16 13 19 19 O 1.35995 * 120.07480 * 0.02562 * 18 17 16 20 20 C 1.42900 * 117.00414 * 84.78714 * 19 18 17 21 21 C 1.38574 * 119.85288 * 179.71775 * 18 17 16 22 22 C 1.50697 * 119.99799 * 180.27498 * 21 18 17 23 23 O 1.42901 * 109.47303 * 285.27870 * 22 21 18 24 24 Si 1.86298 * 109.46761 * 165.28144 * 22 21 18 25 25 C 1.38237 * 120.00040 * 0.55930 * 21 18 17 26 26 C 1.38262 * 120.14657 * 359.71724 * 25 21 18 27 27 C 1.38245 * 120.14527 * 0.02562 * 26 25 21 28 28 C 1.53001 * 109.46866 * 60.00265 * 10 9 8 29 29 C 1.52996 * 109.47404 * 180.02562 * 6 4 3 30 30 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46781 * 300.00056 * 1 2 3 32 32 H 1.09002 * 109.47051 * 59.99837 * 1 2 3 33 33 H 1.09000 * 109.47321 * 240.00486 * 2 1 3 34 34 H 1.09002 * 109.47051 * 120.00162 * 2 1 3 35 35 H 1.09003 * 109.46687 * 299.99966 * 8 6 4 36 36 H 1.09000 * 109.46935 * 59.99793 * 8 6 4 37 37 H 1.09006 * 109.46351 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47345 * 59.99898 * 9 8 6 39 39 H 1.08998 * 109.46943 * 300.00161 * 12 10 9 40 40 H 1.09003 * 109.46843 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47106 * 304.78452 * 20 19 18 42 42 H 1.08995 * 109.46844 * 64.78013 * 20 19 18 43 43 H 1.08996 * 109.46860 * 184.77997 * 20 19 18 44 44 H 1.08998 * 109.47239 * 45.28152 * 22 21 18 45 45 H 0.96697 * 113.99970 * 300.00436 * 23 22 21 46 46 H 1.48506 * 109.99877 * 180.02562 * 24 22 21 47 47 H 1.48501 * 110.00254 * 301.31907 * 24 22 21 48 48 H 1.07995 * 119.92965 * 179.69740 * 25 21 18 49 49 H 1.07991 * 119.93087 * 179.97438 * 26 25 21 50 50 H 1.07999 * 119.99853 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46588 * 60.00373 * 28 10 9 52 52 H 1.08998 * 109.46960 * 179.97438 * 28 10 9 53 53 H 1.09006 * 109.46975 * 60.00682 * 29 6 4 54 54 H 1.08998 * 109.47281 * 300.00222 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 6 3.4486 3.6850 1.2487 9 6 4.0330 5.0991 1.2478 10 6 5.5609 5.0195 1.2483 11 9 5.9921 4.3374 2.3911 12 6 6.1452 6.4335 1.2480 13 16 5.5855 7.3194 2.7287 14 8 6.0502 6.6697 3.9040 15 8 4.2245 7.7052 2.5943 16 8 6.3528 8.6334 2.6979 17 6 5.8844 9.5262 1.7853 18 6 4.9412 10.4778 2.1612 19 8 4.4862 10.5174 3.4422 20 6 5.2696 11.2498 4.3867 21 6 4.4714 11.3891 1.2290 22 6 3.4546 12.4249 1.6341 23 8 2.1746 11.8057 1.7769 24 14 3.3617 13.7484 0.3263 25 6 4.9310 11.3442 -0.0740 26 6 5.8638 10.3951 -0.4489 27 6 6.3406 9.4864 0.4775 28 6 6.0330 4.2719 -0.0003 29 6 5.4486 2.8573 0.0001 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3601 3.7421 1.2482 36 1 3.7842 3.1533 2.1391 37 1 3.6970 5.6315 2.1377 38 1 3.6971 5.6305 0.3574 39 1 5.8093 6.9653 0.3578 40 1 7.2338 6.3768 1.2479 41 1 6.2918 10.8714 4.3820 42 1 5.2718 12.3055 4.1158 43 1 4.8426 11.1311 5.3825 44 1 3.7498 12.8721 2.5832 45 1 1.8484 11.3862 0.9691 46 1 2.3627 14.7765 0.7142 47 1 4.6942 14.3785 0.1456 48 1 4.5604 12.0519 -0.8007 49 1 6.2202 10.3629 -1.4678 50 1 7.0690 8.7458 0.1819 51 1 5.6971 4.8034 -0.8907 52 1 7.1215 4.2156 -0.0002 53 1 5.7846 2.3249 -0.8897 54 1 5.7845 2.3256 0.8903 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:30:53 Heat of formation + Delta-G solvation = -275.502660 kcal Electronic energy + Delta-G solvation = -43409.245584 eV Core-core repulsion = 37741.980686 eV Total energy + Delta-G solvation = -5667.264898 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -49.07800 -42.55558 -41.77717 -40.24075 -39.09806 -38.60877 -38.45704 -37.66906 -37.45764 -37.30653 -34.23009 -32.66272 -32.49187 -32.07350 -31.19723 -29.11272 -28.28704 -26.80375 -25.12585 -24.65142 -24.12940 -23.58669 -23.00705 -21.93197 -21.53274 -20.84819 -19.59073 -19.24726 -18.96810 -18.77828 -18.65201 -17.94951 -17.78937 -17.69501 -17.30608 -17.12024 -16.83842 -16.73106 -16.42642 -16.20264 -15.92992 -15.80658 -15.48004 -15.36294 -15.27881 -14.96839 -14.85046 -14.49438 -14.45770 -14.25520 -14.13991 -14.03192 -13.80746 -13.71601 -13.49724 -13.44175 -13.40185 -13.28204 -13.18237 -13.17592 -13.14398 -13.10917 -12.91498 -12.73340 -12.59405 -12.45287 -12.18513 -12.15991 -11.96331 -11.87539 -11.72822 -11.55882 -11.35861 -11.29291 -11.11719 -10.41377 -10.15384 -9.85744 -5.01425 -1.25719 -0.15724 -0.09454 0.89350 1.07463 1.27491 1.61032 1.67074 2.00902 2.14235 2.36020 2.61133 2.73364 2.87936 3.11006 3.26613 3.33583 3.37572 3.54451 3.63132 3.64434 3.73322 3.80127 3.84773 3.94575 3.96074 4.02332 4.03666 4.06475 4.11891 4.13023 4.16251 4.17249 4.24047 4.29331 4.30890 4.32622 4.45248 4.54211 4.60032 4.63057 4.76596 4.80079 4.80459 4.88757 4.91116 4.94754 4.95099 5.01770 5.09725 5.12167 5.13532 5.16455 5.26635 5.43494 5.53536 6.23392 6.64002 6.81951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.075 4.075 7 H 0.153 0.847 8 C -0.111 4.111 9 C -0.170 4.170 10 C 0.121 3.879 11 F -0.216 7.216 12 C -0.662 4.662 13 S 2.577 3.423 14 O -0.972 6.972 15 O -0.954 6.954 16 O -0.668 6.668 17 C 0.008 3.992 18 C 0.115 3.885 19 O -0.347 6.347 20 C 0.022 3.978 21 C -0.138 4.138 22 C -0.087 4.087 23 O -0.553 6.553 24 Si 0.807 3.193 25 C -0.075 4.075 26 C -0.083 4.083 27 C -0.114 4.114 28 C -0.120 4.120 29 C -0.111 4.111 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.204 0.796 40 H 0.181 0.819 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.395 0.605 46 H -0.304 1.304 47 H -0.271 1.271 48 H 0.181 0.819 49 H 0.199 0.801 50 H 0.186 0.814 51 H 0.134 0.866 52 H 0.100 0.900 53 H 0.090 0.910 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 4.855 -14.531 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.170 0.830 8 C -0.149 4.149 9 C -0.207 4.207 10 C 0.101 3.899 11 F -0.197 7.197 12 C -0.791 4.791 13 S 2.677 3.323 14 O -0.970 6.970 15 O -0.952 6.952 16 O -0.628 6.628 17 C -0.033 4.033 18 C 0.069 3.931 19 O -0.264 6.264 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.194 4.194 23 O -0.361 6.361 24 Si 0.710 3.290 25 C -0.093 4.093 26 C -0.100 4.100 27 C -0.133 4.133 28 C -0.158 4.158 29 C -0.149 4.149 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.221 0.779 40 H 0.199 0.801 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.245 0.755 46 H -0.233 1.233 47 H -0.197 1.197 48 H 0.198 0.802 49 H 0.216 0.784 50 H 0.203 0.797 51 H 0.153 0.847 52 H 0.118 0.882 53 H 0.109 0.891 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.422 5.654 -13.166 14.335 hybrid contribution 0.782 -1.094 1.825 2.267 sum 1.204 4.560 -11.341 12.283 Atomic orbital electron populations 1.21823 0.90615 1.04233 1.03817 1.23243 0.96971 0.79446 1.02352 1.86510 1.24214 1.33349 1.83443 1.24295 0.80594 0.93317 0.71039 1.90674 1.61165 1.44497 1.46707 1.21287 0.96490 0.88467 1.03116 0.82964 1.21468 1.02850 0.94320 0.96261 1.22687 0.92046 0.98960 1.07003 1.20930 0.95140 0.88256 0.85540 1.92954 1.91387 1.81850 1.53513 1.31459 1.16135 1.07946 1.23601 1.05889 0.74299 0.74344 0.77738 1.93609 1.81833 1.74855 1.46679 1.93668 1.35450 1.78797 1.87318 1.85716 1.71542 1.41901 1.63614 1.19055 1.00233 0.95176 0.88886 1.19043 0.93095 0.94684 0.86270 1.86116 1.50187 1.73807 1.16297 1.23280 0.95566 0.95799 0.92474 1.20875 1.00571 0.97474 0.95020 1.25509 0.83237 1.00989 1.09689 1.86558 1.31874 1.76139 1.41491 0.93791 0.78097 0.74606 0.82506 1.21648 0.95674 0.98651 0.93356 1.21677 0.94786 0.91910 1.01676 1.21954 1.00033 1.02574 0.88778 1.22171 1.03158 0.94321 0.96106 1.21493 0.91783 0.97756 1.03886 0.88668 0.91464 0.90853 0.91130 0.91970 0.88161 0.92765 0.91430 0.83988 0.77854 0.80092 0.93102 0.91840 0.87614 0.89296 0.75526 1.23253 1.19734 0.80244 0.78388 0.79688 0.84743 0.88173 0.89112 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.19 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.32 10.12 -51.36 -0.52 -1.84 16 4 C 0.46 2.20 7.25 71.24 0.52 2.72 16 5 O -0.54 -6.27 15.73 21.96 0.35 -5.92 16 6 C -0.08 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 8 C -0.11 0.06 5.01 30.60 0.15 0.21 16 9 C -0.17 0.38 4.56 30.59 0.14 0.52 16 10 C 0.12 -0.26 0.88 -10.80 -0.01 -0.27 16 11 F -0.22 -1.71 14.81 44.97 0.67 -1.04 16 12 C -0.66 4.27 4.43 71.98 0.32 4.58 16 13 S 2.58 18.65 4.37 -56.49 -0.25 18.40 16 14 O -0.97 -17.22 17.30 -118.57 -2.05 -19.27 16 15 O -0.95 -10.45 14.29 -118.19 -1.69 -12.13 16 16 O -0.67 -4.17 9.84 -60.47 -0.59 -4.76 16 17 C 0.01 0.02 4.76 22.57 0.11 0.12 16 18 C 0.12 0.65 5.02 22.57 0.11 0.77 16 19 O -0.35 -4.07 9.27 -77.59 -0.72 -4.79 16 20 C 0.02 0.14 11.04 113.37 1.25 1.39 16 21 C -0.14 0.16 5.27 -19.79 -0.10 0.05 16 22 C -0.09 0.01 2.37 71.23 0.17 0.18 16 23 O -0.55 -1.56 12.88 -148.98 -1.92 -3.47 16 24 Si 0.81 -4.94 29.92 68.60 2.05 -2.89 16 25 C -0.08 0.78 8.66 22.28 0.19 0.98 16 26 C -0.08 1.16 10.04 22.28 0.22 1.39 16 27 C -0.11 1.06 8.51 22.35 0.19 1.25 16 28 C -0.12 0.99 5.00 30.61 0.15 1.15 16 29 C -0.11 0.25 4.38 30.61 0.13 0.38 16 30 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 35 H 0.10 -0.22 8.11 -2.39 -0.02 -0.24 16 36 H 0.05 0.25 7.80 -2.39 -0.02 0.23 16 37 H 0.07 0.21 5.76 -2.38 -0.01 0.19 16 38 H 0.14 -1.49 8.14 -2.39 -0.02 -1.51 16 39 H 0.20 -3.40 6.81 -2.39 -0.02 -3.42 16 40 H 0.18 -2.12 8.14 -2.39 -0.02 -2.14 16 41 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.06 0.14 7.53 -2.39 -0.02 0.12 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.09 0.30 7.12 -2.39 -0.02 0.29 16 45 H 0.39 -2.71 8.70 -74.06 -0.64 -3.36 16 46 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 47 H -0.27 0.88 7.11 99.48 0.71 1.58 16 48 H 0.18 -3.21 5.12 -2.91 -0.01 -3.22 16 49 H 0.20 -4.58 8.06 -2.91 -0.02 -4.61 16 50 H 0.19 -3.28 7.27 -2.91 -0.02 -3.30 16 51 H 0.13 -2.23 8.14 -2.39 -0.02 -2.25 16 52 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 53 H 0.09 -0.28 8.10 -2.38 -0.02 -0.30 16 54 H 0.05 0.22 7.76 -2.39 -0.02 0.21 16 Total: 0.00 -45.30 444.87 0.36 -44.93 By element: Atomic # 1 Polarization: -24.87 SS G_CDS: 0.34 Total: -24.53 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 4.71 Total: 17.32 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -7.15 Total: -52.19 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.67 Total: -1.04 kcal Atomic # 14 Polarization: -4.94 SS G_CDS: 2.05 Total: -2.89 kcal Atomic # 16 Polarization: 18.65 SS G_CDS: -0.25 Total: 18.40 kcal Total: -45.30 0.36 -44.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.570 kcal (2) G-P(sol) polarization free energy of solvation -45.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds