Wall clock time and date at job start Mon Mar 8 2021 10:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47214 * 2 1 4 4 C 1.34225 * 116.99761 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00375 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99617 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.85223 * 311.19824 * 6 4 3 8 8 C 1.53780 * 113.69280 * 82.47068 * 6 4 3 9 9 C 1.54057 * 87.07904 * 139.98460 * 8 6 4 10 10 F 1.39899 * 113.61135 * 89.07469 * 9 8 6 11 11 C 1.52999 * 113.69546 * 220.05140 * 9 8 6 12 12 S 1.81396 * 109.47111 * 282.42606 * 11 9 8 13 13 O 1.42105 * 110.54405 * 286.22066 * 12 11 9 14 14 O 1.42101 * 110.54623 * 62.97391 * 12 11 9 15 15 O 1.52202 * 104.44782 * 174.59942 * 12 11 9 16 16 C 1.35994 * 113.99991 * 74.75830 * 15 12 11 17 17 C 1.39155 * 120.07302 * 94.23853 * 16 15 12 18 18 O 1.36000 * 120.07410 * 359.97438 * 17 16 15 19 19 C 1.42900 * 116.99514 * 84.11293 * 18 17 16 20 20 C 1.38569 * 119.85359 * 179.72568 * 17 16 15 21 21 C 1.50701 * 120.00076 * 180.27208 * 20 17 16 22 22 O 1.42898 * 109.47030 * 75.27077 * 21 20 17 23 23 Si 1.86299 * 109.47018 * 195.27318 * 21 20 17 24 24 C 1.38241 * 119.99581 * 0.54080 * 20 17 16 25 25 C 1.38248 * 120.14980 * 359.72989 * 24 20 17 26 26 C 1.38240 * 120.14568 * 0.02562 * 25 24 20 27 27 C 1.53776 * 86.98487 * 334.56930 * 9 8 6 28 28 H 1.08997 * 109.47408 * 299.99876 * 1 2 3 29 29 H 1.08996 * 109.46953 * 59.99976 * 1 2 3 30 30 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46940 * 239.99982 * 2 1 3 32 32 H 1.09004 * 109.46984 * 120.00292 * 2 1 3 33 33 H 1.08996 * 113.61558 * 254.53988 * 8 6 4 34 34 H 1.09000 * 113.61169 * 25.35644 * 8 6 4 35 35 H 1.09003 * 109.46764 * 42.42614 * 11 9 8 36 36 H 1.08993 * 109.47038 * 162.42350 * 11 9 8 37 37 H 1.09001 * 109.46913 * 184.94010 * 19 18 17 38 38 H 1.08998 * 109.47583 * 304.93730 * 19 18 17 39 39 H 1.08999 * 109.46925 * 64.94052 * 19 18 17 40 40 H 1.08998 * 109.47156 * 315.27324 * 21 20 17 41 41 H 0.96706 * 114.00187 * 60.00458 * 22 21 20 42 42 H 1.48496 * 110.00085 * 58.67755 * 23 21 20 43 43 H 1.48499 * 110.00029 * 180.02562 * 23 21 20 44 44 H 1.08007 * 119.92454 * 179.74900 * 24 20 17 45 45 H 1.08001 * 119.92689 * 180.02562 * 25 24 20 46 46 H 1.08008 * 120.00089 * 180.02562 * 26 25 24 47 47 H 1.08996 * 113.61652 * 270.83888 * 27 9 8 48 48 H 1.09002 * 113.61548 * 140.01767 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.4714 3.5816 -0.7546 8 6 3.9859 3.5785 1.3974 9 6 5.3587 4.1444 0.9870 10 9 5.2856 5.3940 0.3624 11 6 6.4022 4.0975 2.1049 12 16 6.0920 5.4453 3.2786 13 8 6.4780 6.6930 2.7185 14 8 4.8252 5.2825 3.9015 15 8 7.0944 5.2110 4.3996 16 6 8.3726 5.5457 4.0776 17 6 8.8646 6.8076 4.3969 18 8 8.0680 7.7091 5.0313 19 6 7.9870 7.6143 6.4548 20 6 10.1694 7.1418 4.0717 21 6 10.7075 8.5053 4.4215 22 8 10.9794 8.5649 5.8231 23 14 12.2791 8.8155 3.4702 24 6 10.9758 6.2264 3.4215 25 6 10.4853 4.9746 3.0993 26 6 9.1861 4.6331 3.4253 27 6 5.4583 2.9680 0.0016 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2288 4.3452 1.5616 34 1 4.0362 2.8527 2.2091 35 1 6.3358 3.1412 2.6240 36 1 7.3983 4.2103 1.6771 37 1 7.2543 8.3312 6.8255 38 1 7.6826 6.6059 6.7351 39 1 8.9621 7.8336 6.8897 40 1 9.9699 9.2646 4.1619 41 1 11.6291 7.9156 6.1257 42 1 12.0161 8.7246 2.0116 43 1 12.8202 10.1568 3.8068 44 1 11.9914 6.4895 3.1650 45 1 11.1185 4.2621 2.5917 46 1 8.8054 3.6543 3.1728 47 1 5.9126 2.0754 0.4317 48 1 5.8898 3.2405 -0.9615 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:43 Heat of formation + Delta-G solvation = -232.219646 kcal Electronic energy + Delta-G solvation = -38184.628118 eV Core-core repulsion = 32830.315350 eV Total energy + Delta-G solvation = -5354.312768 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.20613 -42.60603 -41.82405 -40.26119 -39.40856 -38.58156 -38.28061 -37.58622 -37.47498 -37.14156 -32.99336 -32.75123 -32.00037 -31.31751 -28.04247 -27.44103 -27.20083 -26.78302 -24.72138 -24.05294 -23.24904 -22.27140 -21.54402 -20.94788 -19.64479 -19.28044 -19.19299 -18.78227 -18.60606 -18.06361 -17.74699 -17.65225 -17.50801 -17.06670 -16.87967 -16.46291 -16.33829 -16.18494 -16.11072 -15.81066 -15.49566 -15.42879 -15.31511 -14.74990 -14.67267 -14.56608 -14.38402 -14.13280 -14.09509 -13.83379 -13.81256 -13.61767 -13.44370 -13.31345 -13.22458 -13.15061 -13.09428 -13.01592 -12.96826 -12.71258 -12.60485 -12.50954 -12.17434 -12.01076 -11.95313 -11.58059 -11.54467 -11.41654 -11.07525 -10.58219 -10.32588 -9.99158 -5.15137 -1.25494 -0.32430 -0.24207 0.88562 1.03295 1.17162 1.51711 1.57172 1.92111 1.94843 2.33594 2.52436 2.60061 2.65302 2.67726 2.95981 3.04347 3.06659 3.18367 3.39875 3.41008 3.50599 3.65485 3.71630 3.76824 3.84503 3.89470 3.92785 3.95133 4.14767 4.15999 4.21171 4.24589 4.26749 4.35707 4.42881 4.47904 4.51507 4.55449 4.59427 4.67414 4.69924 4.77102 4.78710 4.87390 4.88401 4.94314 4.98910 5.24795 5.38174 6.28357 6.43778 6.63844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.503 6.503 6 C -0.110 4.110 7 H 0.138 0.862 8 C -0.145 4.145 9 C 0.103 3.897 10 F -0.171 7.171 11 C -0.678 4.678 12 S 2.592 3.408 13 O -0.920 6.920 14 O -0.913 6.913 15 O -0.656 6.656 16 C 0.039 3.961 17 C 0.159 3.841 18 O -0.323 6.323 19 C 0.030 3.970 20 C -0.124 4.124 21 C -0.067 4.067 22 O -0.534 6.534 23 Si 0.689 3.311 24 C -0.082 4.082 25 C -0.100 4.100 26 C -0.120 4.120 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.124 0.876 41 H 0.377 0.623 42 H -0.252 1.252 43 H -0.250 1.250 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.121 0.879 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -5.321 -0.024 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.391 6.391 6 C -0.129 4.129 7 H 0.156 0.844 8 C -0.183 4.183 9 C 0.083 3.917 10 F -0.151 7.151 11 C -0.802 4.802 12 S 2.685 3.315 13 O -0.918 6.918 14 O -0.911 6.911 15 O -0.615 6.615 16 C -0.003 4.003 17 C 0.112 3.888 18 O -0.240 6.240 19 C -0.063 4.063 20 C -0.125 4.125 21 C -0.177 4.177 22 O -0.339 6.339 23 Si 0.590 3.410 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.158 4.158 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.141 0.859 41 H 0.224 0.776 42 H -0.176 1.176 43 H -0.174 1.174 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.166 0.834 47 H 0.139 0.861 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.830 -3.986 -0.240 6.267 hybrid contribution -0.701 -0.881 -0.290 1.163 sum 4.129 -4.867 -0.529 6.404 Atomic orbital electron populations 1.21830 0.92185 1.03339 1.03800 1.23129 0.95760 0.79596 1.02821 1.86523 1.24002 1.32980 1.83458 1.23201 0.80904 0.91789 0.72256 1.90683 1.60550 1.42725 1.45125 1.22480 0.97172 0.92115 1.01094 0.84385 1.23841 0.96064 1.01891 0.96460 1.21204 0.95402 0.82172 0.92887 1.93008 1.97005 1.41674 1.83403 1.31435 1.09592 1.24126 1.15029 1.05775 0.74857 0.76112 0.74795 1.93714 1.81051 1.38156 1.78893 1.93663 1.38197 1.86678 1.72561 1.85744 1.26909 1.87063 1.61782 1.18558 0.81283 0.94444 1.06059 1.18530 0.89305 0.86330 0.94668 1.86051 1.64761 1.51974 1.21174 1.23254 1.03441 1.02474 0.77137 1.20722 0.92406 0.98337 1.01040 1.25138 1.09065 0.94853 0.88662 1.86564 1.65311 1.60858 1.21145 0.95237 0.80586 0.85861 0.79364 1.21209 0.99574 0.93125 0.96089 1.21066 0.94353 0.96878 0.99549 1.21427 0.94872 0.99062 0.98683 1.23576 0.93798 0.97661 1.00815 0.91251 0.91293 0.89920 0.90982 0.90987 0.87071 0.86546 0.82195 0.82900 0.88263 0.93123 0.91371 0.85850 0.77581 1.17648 1.17438 0.83565 0.83145 0.83436 0.86057 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 10.29 37.16 0.38 0.64 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.53 10.22 -39.24 -0.40 -0.93 16 4 C 0.48 0.71 7.49 36.01 0.27 0.98 16 5 O -0.50 -1.86 15.65 -18.74 -0.29 -2.16 16 6 C -0.11 0.07 4.24 -90.95 -0.39 -0.31 16 7 H 0.14 -0.28 8.14 -51.93 -0.42 -0.71 16 8 C -0.14 0.07 6.68 -25.77 -0.17 -0.11 16 9 C 0.10 -0.02 1.58 -89.66 -0.14 -0.16 16 10 F -0.17 -0.38 16.75 2.25 0.04 -0.34 16 11 C -0.68 1.06 4.76 37.16 0.18 1.24 16 12 S 2.59 7.98 4.87 -107.50 -0.52 7.46 16 13 O -0.92 -5.68 16.16 -67.12 -1.08 -6.76 16 14 O -0.91 -5.03 17.71 -67.04 -1.19 -6.22 16 15 O -0.66 -1.62 9.84 -54.22 -0.53 -2.16 16 16 C 0.04 0.06 4.75 -39.12 -0.19 -0.12 16 17 C 0.16 0.45 5.08 -39.12 -0.20 0.25 16 18 O -0.32 -1.48 9.37 -34.68 -0.32 -1.81 16 19 C 0.03 0.05 11.13 101.05 1.12 1.18 16 20 C -0.12 -0.01 5.27 -104.50 -0.55 -0.56 16 21 C -0.07 0.01 2.38 36.01 0.09 0.10 16 22 O -0.53 0.40 11.54 -35.23 -0.41 0.00 16 23 Si 0.69 -1.39 29.92 -169.99 -5.09 -6.47 16 24 C -0.08 0.23 8.66 -39.58 -0.34 -0.11 16 25 C -0.10 0.37 10.04 -39.58 -0.40 -0.03 16 26 C -0.12 0.25 8.43 -39.46 -0.33 -0.08 16 27 C -0.12 0.18 6.85 -25.92 -0.18 0.00 16 28 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 32 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 33 H 0.11 -0.06 8.14 -51.93 -0.42 -0.49 16 34 H 0.12 -0.19 8.00 -51.93 -0.42 -0.60 16 35 H 0.16 -0.77 8.06 -51.92 -0.42 -1.19 16 36 H 0.15 -0.60 6.62 -51.93 -0.34 -0.94 16 37 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.05 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.07 0.04 6.76 -51.93 -0.35 -0.31 16 40 H 0.12 0.21 7.82 -51.93 -0.41 -0.19 16 41 H 0.38 -1.94 8.70 45.56 0.40 -1.55 16 42 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 43 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 44 H 0.15 -0.88 5.12 -52.48 -0.27 -1.15 16 45 H 0.15 -1.03 8.06 -52.49 -0.42 -1.46 16 46 H 0.15 -0.80 7.10 -52.48 -0.37 -1.17 16 47 H 0.12 -0.25 7.39 -51.93 -0.38 -0.63 16 48 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 LS Contribution 415.08 15.07 6.26 6.26 Total: 0.00 -13.46 415.08 -10.57 -24.04 By element: Atomic # 1 Polarization: -7.63 SS G_CDS: -6.41 Total: -14.04 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.61 Total: 3.14 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -4.23 Total: -20.03 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.09 Total: -6.47 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -0.52 Total: 7.46 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -13.46 -10.57 -24.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.183 kcal (2) G-P(sol) polarization free energy of solvation -13.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds