Wall clock time and date at job start Mon Mar 8 2021 10:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47214 * 2 1 4 4 C 1.34225 * 116.99761 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00375 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99617 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.85223 * 311.19824 * 6 4 3 8 8 C 1.53780 * 113.69280 * 82.47068 * 6 4 3 9 9 C 1.54057 * 87.07904 * 139.98460 * 8 6 4 10 10 F 1.39899 * 113.61135 * 89.07469 * 9 8 6 11 11 C 1.52999 * 113.69546 * 220.05140 * 9 8 6 12 12 S 1.81396 * 109.47111 * 282.42606 * 11 9 8 13 13 O 1.42105 * 110.54405 * 286.22066 * 12 11 9 14 14 O 1.42101 * 110.54623 * 62.97391 * 12 11 9 15 15 O 1.52202 * 104.44782 * 174.59942 * 12 11 9 16 16 C 1.35994 * 113.99991 * 74.75830 * 15 12 11 17 17 C 1.39155 * 120.07302 * 94.23853 * 16 15 12 18 18 O 1.36000 * 120.07410 * 359.97438 * 17 16 15 19 19 C 1.42900 * 116.99514 * 84.11293 * 18 17 16 20 20 C 1.38569 * 119.85359 * 179.72568 * 17 16 15 21 21 C 1.50701 * 120.00076 * 180.27208 * 20 17 16 22 22 O 1.42898 * 109.47030 * 75.27077 * 21 20 17 23 23 Si 1.86299 * 109.47018 * 195.27318 * 21 20 17 24 24 C 1.38241 * 119.99581 * 0.54080 * 20 17 16 25 25 C 1.38248 * 120.14980 * 359.72989 * 24 20 17 26 26 C 1.38240 * 120.14568 * 0.02562 * 25 24 20 27 27 C 1.53776 * 86.98487 * 334.56930 * 9 8 6 28 28 H 1.08997 * 109.47408 * 299.99876 * 1 2 3 29 29 H 1.08996 * 109.46953 * 59.99976 * 1 2 3 30 30 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46940 * 239.99982 * 2 1 3 32 32 H 1.09004 * 109.46984 * 120.00292 * 2 1 3 33 33 H 1.08996 * 113.61558 * 254.53988 * 8 6 4 34 34 H 1.09000 * 113.61169 * 25.35644 * 8 6 4 35 35 H 1.09003 * 109.46764 * 42.42614 * 11 9 8 36 36 H 1.08993 * 109.47038 * 162.42350 * 11 9 8 37 37 H 1.09001 * 109.46913 * 184.94010 * 19 18 17 38 38 H 1.08998 * 109.47583 * 304.93730 * 19 18 17 39 39 H 1.08999 * 109.46925 * 64.94052 * 19 18 17 40 40 H 1.08998 * 109.47156 * 315.27324 * 21 20 17 41 41 H 0.96706 * 114.00187 * 60.00458 * 22 21 20 42 42 H 1.48496 * 110.00085 * 58.67755 * 23 21 20 43 43 H 1.48499 * 110.00029 * 180.02562 * 23 21 20 44 44 H 1.08007 * 119.92454 * 179.74900 * 24 20 17 45 45 H 1.08001 * 119.92689 * 180.02562 * 25 24 20 46 46 H 1.08008 * 120.00089 * 180.02562 * 26 25 24 47 47 H 1.08996 * 113.61652 * 270.83888 * 27 9 8 48 48 H 1.09002 * 113.61548 * 140.01767 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.4714 3.5816 -0.7546 8 6 3.9859 3.5785 1.3974 9 6 5.3587 4.1444 0.9870 10 9 5.2856 5.3940 0.3624 11 6 6.4022 4.0975 2.1049 12 16 6.0920 5.4453 3.2786 13 8 6.4780 6.6930 2.7185 14 8 4.8252 5.2825 3.9015 15 8 7.0944 5.2110 4.3996 16 6 8.3726 5.5457 4.0776 17 6 8.8646 6.8076 4.3969 18 8 8.0680 7.7091 5.0313 19 6 7.9870 7.6143 6.4548 20 6 10.1694 7.1418 4.0717 21 6 10.7075 8.5053 4.4215 22 8 10.9794 8.5649 5.8231 23 14 12.2791 8.8155 3.4702 24 6 10.9758 6.2264 3.4215 25 6 10.4853 4.9746 3.0993 26 6 9.1861 4.6331 3.4253 27 6 5.4583 2.9680 0.0016 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2288 4.3452 1.5616 34 1 4.0362 2.8527 2.2091 35 1 6.3358 3.1412 2.6240 36 1 7.3983 4.2103 1.6771 37 1 7.2543 8.3312 6.8255 38 1 7.6826 6.6059 6.7351 39 1 8.9621 7.8336 6.8897 40 1 9.9699 9.2646 4.1619 41 1 11.6291 7.9156 6.1257 42 1 12.0161 8.7246 2.0116 43 1 12.8202 10.1568 3.8068 44 1 11.9914 6.4895 3.1650 45 1 11.1185 4.2621 2.5917 46 1 8.8054 3.6543 3.1728 47 1 5.9126 2.0754 0.4317 48 1 5.8898 3.2405 -0.9615 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:41 Heat of formation + Delta-G solvation = -236.618509 kcal Electronic energy + Delta-G solvation = -38184.818867 eV Core-core repulsion = 32830.315350 eV Total energy + Delta-G solvation = -5354.503517 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.25658 -42.58752 -41.88341 -40.27171 -39.38146 -38.60329 -38.52370 -37.58001 -37.51226 -37.36925 -32.92076 -32.64867 -31.93281 -31.22330 -28.11952 -27.33683 -27.15261 -26.73289 -24.70379 -23.99713 -23.14634 -22.28944 -21.57512 -20.90334 -19.71636 -19.34368 -19.20946 -18.82574 -18.65099 -18.07964 -17.76723 -17.67291 -17.47021 -17.04702 -16.89934 -16.49774 -16.36703 -16.20890 -15.98555 -15.83423 -15.44260 -15.43034 -15.40000 -14.73108 -14.66594 -14.49471 -14.34066 -14.22357 -14.11407 -13.72659 -13.70025 -13.51886 -13.51023 -13.43631 -13.31541 -13.18354 -13.11075 -12.98338 -12.95013 -12.76265 -12.55085 -12.46526 -12.17889 -11.95819 -11.91082 -11.59549 -11.53189 -11.46057 -11.16414 -10.50183 -10.18777 -9.88780 -5.03880 -1.34045 -0.20097 -0.12976 0.83479 0.95728 1.26020 1.53244 1.67591 2.01022 2.11391 2.28265 2.59796 2.62292 2.64600 2.74602 2.91121 3.12833 3.16627 3.28753 3.52995 3.56875 3.71808 3.79287 3.81572 3.94666 3.95497 4.01055 4.05209 4.09118 4.22645 4.26199 4.29134 4.29899 4.32316 4.37437 4.39967 4.47988 4.59896 4.66173 4.72192 4.74172 4.79408 4.87203 4.90396 4.99179 5.08150 5.10423 5.12427 5.37872 5.49626 6.23194 6.56683 6.75846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.478 3.522 5 O -0.527 6.527 6 C -0.110 4.110 7 H 0.148 0.852 8 C -0.155 4.155 9 C 0.091 3.909 10 F -0.189 7.189 11 C -0.654 4.654 12 S 2.581 3.419 13 O -0.966 6.966 14 O -0.956 6.956 15 O -0.661 6.661 16 C 0.007 3.993 17 C 0.117 3.883 18 O -0.355 6.355 19 C 0.028 3.972 20 C -0.138 4.138 21 C -0.084 4.084 22 O -0.550 6.550 23 Si 0.810 3.190 24 C -0.076 4.076 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.108 4.108 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.200 0.800 36 H 0.185 0.815 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.396 0.604 42 H -0.280 1.280 43 H -0.301 1.301 44 H 0.181 0.819 45 H 0.197 0.803 46 H 0.186 0.814 47 H 0.134 0.866 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 -8.176 -1.386 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.321 3.679 5 O -0.416 6.416 6 C -0.129 4.129 7 H 0.166 0.834 8 C -0.192 4.192 9 C 0.072 3.928 10 F -0.169 7.169 11 C -0.782 4.782 12 S 2.680 3.320 13 O -0.965 6.965 14 O -0.955 6.955 15 O -0.620 6.620 16 C -0.035 4.035 17 C 0.070 3.930 18 O -0.272 6.272 19 C -0.065 4.065 20 C -0.139 4.139 21 C -0.192 4.192 22 O -0.359 6.359 23 Si 0.714 3.286 24 C -0.093 4.093 25 C -0.104 4.104 26 C -0.137 4.137 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.218 0.782 36 H 0.203 0.797 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.246 0.754 42 H -0.206 1.206 43 H -0.230 1.230 44 H 0.198 0.802 45 H 0.214 0.786 46 H 0.203 0.797 47 H 0.152 0.848 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.170 -6.827 -1.541 10.019 hybrid contribution -1.427 -0.015 0.131 1.433 sum 5.743 -6.842 -1.410 9.043 Atomic orbital electron populations 1.21842 0.90989 1.04312 1.03639 1.23298 0.96780 0.79059 1.02838 1.86534 1.24230 1.33842 1.83270 1.23567 0.80681 0.92262 0.71347 1.90663 1.60917 1.43624 1.46391 1.22589 0.98092 0.90989 1.01228 0.83411 1.23969 0.96107 1.02065 0.97068 1.21447 0.95835 0.81907 0.93651 1.92977 1.97106 1.43032 1.83799 1.31296 1.10925 1.22981 1.13013 1.05774 0.74206 0.76838 0.75190 1.93655 1.81396 1.41759 1.79647 1.93600 1.40435 1.87485 1.73937 1.85701 1.27625 1.86941 1.61754 1.19027 0.81186 0.95217 1.08063 1.19040 0.90546 0.87104 0.96271 1.85997 1.65872 1.53331 1.21984 1.23303 1.03930 1.02391 0.76899 1.20874 0.92066 0.98945 1.02055 1.25424 1.09976 0.94391 0.89407 1.86513 1.66342 1.61851 1.21152 0.94061 0.76541 0.82467 0.75565 1.21656 1.00517 0.92884 0.94288 1.21671 0.93943 0.96975 0.97835 1.21970 0.95031 0.99667 0.97008 1.23593 0.92958 0.97040 1.01008 0.91443 0.91375 0.88388 0.90991 0.90957 0.87833 0.85406 0.78233 0.79734 0.88196 0.93299 0.90573 0.89257 0.75379 1.20640 1.22966 0.80185 0.78562 0.79714 0.84780 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.00 6.19 71.98 0.45 0.45 16 3 O -0.36 -1.12 10.22 -51.37 -0.52 -1.64 16 4 C 0.48 1.22 7.49 71.24 0.53 1.76 16 5 O -0.53 -3.49 15.65 21.99 0.34 -3.14 16 6 C -0.11 0.22 4.24 -11.01 -0.05 0.17 16 7 H 0.15 -0.65 8.14 -2.39 -0.02 -0.66 16 8 C -0.15 0.15 6.68 31.21 0.21 0.36 16 9 C 0.09 -0.12 1.58 -10.18 -0.02 -0.13 16 10 F -0.19 -0.93 16.75 44.97 0.75 -0.18 16 11 C -0.65 3.18 4.76 71.98 0.34 3.53 16 12 S 2.58 19.75 4.87 -56.49 -0.27 19.48 16 13 O -0.97 -14.74 16.16 -118.49 -1.91 -16.65 16 14 O -0.96 -13.14 17.71 -118.57 -2.10 -15.24 16 15 O -0.66 -4.18 9.84 -60.50 -0.60 -4.77 16 16 C 0.01 0.03 4.75 22.57 0.11 0.13 16 17 C 0.12 0.86 5.08 22.57 0.11 0.98 16 18 O -0.35 -4.56 9.37 -79.28 -0.74 -5.30 16 19 C 0.03 0.20 11.13 113.37 1.26 1.46 16 20 C -0.14 -0.09 5.27 -19.78 -0.10 -0.20 16 21 C -0.08 -0.09 2.38 71.24 0.17 0.08 16 22 O -0.55 0.06 11.54 -148.98 -1.72 -1.66 16 23 Si 0.81 -3.53 29.92 68.60 2.05 -1.48 16 24 C -0.08 0.61 8.66 22.27 0.19 0.81 16 25 C -0.09 0.97 10.04 22.27 0.22 1.20 16 26 C -0.12 0.80 8.43 22.35 0.19 0.99 16 27 C -0.11 0.54 6.85 31.12 0.21 0.75 16 28 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 32 H 0.07 -0.02 8.13 -2.38 -0.02 -0.04 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.13 -0.47 8.00 -2.39 -0.02 -0.49 16 35 H 0.20 -2.60 8.06 -2.39 -0.02 -2.62 16 36 H 0.19 -2.07 6.62 -2.39 -0.02 -2.08 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 0.31 6.76 -2.39 -0.02 0.30 16 40 H 0.09 0.64 7.82 -2.39 -0.02 0.62 16 41 H 0.40 -3.99 8.70 -74.05 -0.64 -4.64 16 42 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 43 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 44 H 0.18 -2.83 5.12 -2.91 -0.01 -2.85 16 45 H 0.20 -3.96 8.06 -2.91 -0.02 -3.98 16 46 H 0.19 -2.84 7.10 -2.91 -0.02 -2.86 16 47 H 0.13 -0.97 7.39 -2.39 -0.02 -0.99 16 48 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -38.62 415.08 0.26 -38.35 By element: Atomic # 1 Polarization: -21.78 SS G_CDS: 0.41 Total: -21.37 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 4.58 Total: 13.62 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -7.25 Total: -48.41 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.75 Total: -0.18 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.05 Total: -1.48 kcal Atomic # 16 Polarization: 19.75 SS G_CDS: -0.27 Total: 19.48 kcal Total: -38.62 0.26 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.265 kcal (2) G-P(sol) polarization free energy of solvation -38.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds