Wall clock time and date at job start Mon Mar 8 2021 11:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00021 * 2 1 4 4 C 1.39150 * 120.07260 * 270.27160 * 3 2 1 5 5 O 1.35994 * 120.07293 * 0.02562 * 4 3 2 6 6 S 1.52197 * 114.00002 * 270.26933 * 5 4 3 7 7 O 1.42100 * 104.27770 * 191.07165 * 6 5 4 8 8 O 1.42103 * 104.27941 * 318.93003 * 6 5 4 9 9 C 1.81402 * 104.44885 * 75.00346 * 6 5 4 10 10 C 1.52999 * 109.47385 * 180.02562 * 9 6 5 11 11 H 1.08998 * 112.84684 * 43.80203 * 10 9 6 12 12 C 1.53779 * 113.61387 * 174.99737 * 10 9 6 13 13 C 1.53780 * 87.08042 * 89.11644 * 12 10 9 14 14 O 1.42900 * 113.61194 * 270.79969 * 13 12 10 15 15 C 1.42898 * 113.99993 * 294.80933 * 14 13 12 16 16 C 1.52998 * 113.61898 * 139.97995 * 13 12 10 17 17 F 1.39900 * 109.47016 * 54.75252 * 16 13 12 18 18 F 1.39899 * 109.47370 * 174.75584 * 16 13 12 19 19 F 1.39908 * 109.47086 * 294.75405 * 16 13 12 20 20 C 1.53782 * 113.61360 * 272.49736 * 10 9 6 21 21 C 1.38573 * 119.85076 * 180.27426 * 4 3 2 22 22 C 1.38239 * 119.99933 * 359.72801 * 21 4 3 23 23 C 1.38254 * 120.14903 * 359.97438 * 22 21 4 24 24 C 1.38241 * 120.14318 * 0.04699 * 23 22 21 25 25 C 1.50705 * 119.99736 * 179.97438 * 24 23 22 26 26 O 1.42899 * 109.47140 * 104.99827 * 25 24 23 27 27 Si 1.86297 * 109.46898 * 344.99846 * 25 24 23 28 28 H 1.09004 * 109.47311 * 299.99734 * 1 2 3 29 29 H 1.08994 * 109.47245 * 60.00096 * 1 2 3 30 30 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46837 * 299.99714 * 9 6 5 32 32 H 1.09000 * 109.46933 * 59.99591 * 9 6 5 33 33 H 1.08997 * 113.61358 * 203.66120 * 12 10 9 34 34 H 1.08990 * 113.61503 * 334.48283 * 12 10 9 35 35 H 1.08998 * 109.47197 * 302.48010 * 15 14 13 36 36 H 1.09000 * 109.46719 * 62.48405 * 15 14 13 37 37 H 1.08999 * 109.47220 * 182.48146 * 15 14 13 38 38 H 1.09003 * 113.61504 * 25.43123 * 20 10 9 39 39 H 1.08997 * 113.61469 * 156.33429 * 20 10 9 40 40 H 1.08003 * 119.99737 * 179.74885 * 21 4 3 41 41 H 1.08000 * 119.92607 * 180.02562 * 22 21 4 42 42 H 1.07995 * 119.92505 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46738 * 224.99961 * 25 24 23 44 44 H 0.96695 * 113.99945 * 300.00365 * 26 25 24 45 45 H 1.48492 * 110.00158 * 58.68154 * 27 25 24 46 46 H 1.48508 * 109.99873 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3578 1.8356 -1.2042 5 8 2.0450 1.2352 -2.3836 6 16 3.1387 0.3251 -2.9242 7 8 2.7226 0.0263 -4.2496 8 8 4.3424 1.0390 -2.6776 9 6 3.0518 -1.1561 -1.8806 10 6 4.1159 -2.1595 -2.3296 11 1 5.0804 -1.6926 -2.5294 12 6 4.2083 -3.4034 -1.4301 13 6 3.1454 -4.0428 -2.3391 14 8 1.8037 -3.7822 -1.9220 15 6 1.4639 -4.3625 -0.6612 16 6 3.3996 -5.5228 -2.6322 17 9 3.5279 -6.2215 -1.4270 18 9 2.3261 -6.0448 -3.3619 19 9 4.5773 -5.6554 -3.3758 20 6 3.6414 -3.1010 -3.4491 21 6 2.9921 3.0676 -1.1988 22 6 3.3089 3.6768 0.0010 23 6 2.9939 3.0597 1.1974 24 6 2.3615 1.8304 1.1991 25 6 2.0202 1.1605 2.5053 26 8 0.6165 1.2755 2.7470 27 14 2.9581 1.9833 3.8888 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.2295 -0.8792 -0.8413 32 1 2.0641 -1.6078 -1.9725 33 1 5.1765 -3.9021 -1.4727 34 1 3.8656 -3.2308 -0.4099 35 1 1.6210 -5.4403 -0.7032 36 1 2.0940 -3.9335 0.1178 37 1 0.4174 -4.1564 -0.4366 38 1 2.8397 -2.6848 -4.0592 39 1 4.4547 -3.5171 -4.0436 40 1 3.2386 3.5521 -2.1321 41 1 3.8028 4.6372 0.0038 42 1 3.2426 3.5391 2.1327 43 1 2.2953 0.1069 2.4559 44 1 0.3005 2.1877 2.8030 45 1 2.6158 3.4271 3.9462 46 1 2.6306 1.3313 5.1823 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:46 Heat of formation + Delta-G solvation = -286.821887 kcal Electronic energy + Delta-G solvation = -41634.004936 eV Core-core repulsion = 35785.324818 eV Total energy + Delta-G solvation = -5848.680118 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.098 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.15494 -48.70253 -48.58223 -42.61764 -41.51481 -40.31017 -38.71436 -38.22042 -37.74413 -37.39729 -37.09742 -32.74096 -31.80600 -31.32643 -28.49667 -28.19317 -27.77984 -27.03527 -26.90822 -24.74419 -23.65242 -23.24202 -21.67743 -20.67911 -19.94281 -19.58263 -19.46267 -19.26912 -19.17143 -18.82521 -18.58030 -17.88417 -17.35224 -17.18938 -17.04752 -16.56030 -16.47618 -16.13285 -16.09245 -15.87340 -15.75697 -15.59912 -15.49788 -15.45652 -15.22947 -15.04085 -14.80839 -14.77835 -14.62059 -14.61847 -14.33682 -14.16966 -14.05319 -13.59611 -13.46533 -13.38437 -13.32652 -13.25696 -13.12939 -13.06041 -13.01336 -12.84943 -12.40525 -12.28125 -12.26568 -12.10223 -11.84750 -11.45174 -11.23204 -10.85745 -10.83924 -10.26844 -10.08527 -5.14131 -1.09303 -0.31641 -0.20602 0.93768 1.09715 1.37517 1.56307 1.77568 1.93214 2.00615 2.46689 2.49363 2.56936 2.63040 2.82160 2.91396 3.04740 3.09561 3.24065 3.29402 3.35536 3.52151 3.53537 3.64722 3.74354 3.91622 3.93842 4.07533 4.12921 4.15651 4.20395 4.26018 4.30601 4.36479 4.39354 4.44425 4.48450 4.53389 4.60628 4.63522 4.68710 4.70700 4.76839 4.87394 4.93135 4.98342 5.27008 5.63407 6.06829 6.15006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.332 6.332 3 C 0.113 3.887 4 C 0.048 3.952 5 O -0.658 6.658 6 S 2.589 3.411 7 O -0.922 6.922 8 O -0.950 6.950 9 C -0.625 4.625 10 C -0.092 4.092 11 H 0.108 0.892 12 C -0.135 4.135 13 C 0.043 3.957 14 O -0.331 6.331 15 C 0.011 3.989 16 C 0.437 3.563 17 F -0.181 7.181 18 F -0.173 7.173 19 F -0.174 7.174 20 C -0.128 4.128 21 C -0.071 4.071 22 C -0.099 4.099 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.071 4.071 26 O -0.524 6.524 27 Si 0.694 3.306 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.376 0.624 45 H -0.256 1.256 46 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 3.205 6.076 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.249 6.249 3 C 0.066 3.934 4 C 0.005 3.995 5 O -0.617 6.617 6 S 2.685 3.315 7 O -0.920 6.920 8 O -0.948 6.948 9 C -0.752 4.752 10 C -0.111 4.111 11 H 0.126 0.874 12 C -0.174 4.174 13 C 0.001 3.999 14 O -0.248 6.248 15 C -0.085 4.085 16 C 0.382 3.618 17 F -0.163 7.163 18 F -0.155 7.155 19 F -0.156 7.156 20 C -0.165 4.165 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.180 4.180 26 O -0.331 6.331 27 Si 0.595 3.405 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.143 0.857 44 H 0.223 0.777 45 H -0.181 1.181 46 H -0.178 1.178 Dipole moment (debyes) X Y Z Total from point charges 1.335 3.350 6.067 7.058 hybrid contribution -1.366 -0.570 0.084 1.483 sum -0.031 2.779 6.151 6.750 Atomic orbital electron populations 1.23280 0.76814 1.04183 1.02187 1.86001 1.21543 1.23089 1.94274 1.18569 0.97413 0.87220 0.90171 1.18493 1.05682 0.95116 0.80161 1.85726 1.65741 1.67772 1.42445 1.05684 0.73418 0.76526 0.75842 1.93656 1.80769 1.84628 1.32968 1.93652 1.47375 1.68019 1.85801 1.30731 1.09243 1.18188 1.17086 1.21739 0.97919 0.94386 0.97085 0.87362 1.23564 0.98900 0.95312 0.99605 1.23908 0.87097 0.87571 1.01366 1.88054 1.24607 1.73851 1.38311 1.23136 1.02410 0.98383 0.84575 1.21174 0.74533 0.91458 0.74592 1.93185 1.95608 1.81938 1.45534 1.93223 1.55678 1.88652 1.77917 1.93183 1.48581 1.96500 1.77308 1.23498 1.02888 0.94622 0.95447 1.21403 0.94580 0.92388 1.00771 1.21152 0.99106 1.00805 0.90604 1.21386 0.96381 0.93766 0.99614 1.20534 1.01407 0.95296 0.95053 1.25011 0.87175 1.07127 0.98730 1.86633 1.20939 1.32129 1.93369 0.94723 0.89789 0.78681 0.77297 0.91167 0.93090 0.88331 0.83311 0.82587 0.87016 0.88259 0.92800 0.92476 0.88132 0.87373 0.85755 0.83345 0.83355 0.83814 0.85687 0.77665 1.18100 1.17760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.11 101.05 1.12 1.08 16 2 O -0.33 0.24 6.69 -34.23 -0.23 0.01 16 3 C 0.11 -0.03 4.85 -39.12 -0.19 -0.22 16 4 C 0.05 0.05 4.81 -39.12 -0.19 -0.14 16 5 O -0.66 -1.46 9.84 -54.22 -0.53 -2.00 16 6 S 2.59 5.90 5.16 -107.50 -0.55 5.35 16 7 O -0.92 -4.97 18.09 -67.04 -1.21 -6.18 16 8 O -0.95 -3.45 16.26 -67.04 -1.09 -4.54 16 9 C -0.63 0.41 4.09 37.16 0.15 0.57 16 10 C -0.09 0.12 3.84 -89.81 -0.35 -0.23 16 11 H 0.11 -0.29 8.13 -51.93 -0.42 -0.71 16 12 C -0.14 0.28 6.52 -25.92 -0.17 0.11 16 13 C 0.04 0.00 0.85 -89.81 -0.08 -0.08 16 14 O -0.33 -0.14 8.36 -35.23 -0.29 -0.43 16 15 C 0.01 -0.02 10.43 101.05 1.05 1.04 16 16 C 0.44 0.60 2.51 37.16 0.09 0.69 16 17 F -0.18 -0.26 15.24 2.25 0.03 -0.23 16 18 F -0.17 -0.54 17.09 2.25 0.04 -0.50 16 19 F -0.17 -0.24 15.82 2.25 0.04 -0.21 16 20 C -0.13 0.05 6.89 -25.92 -0.18 -0.13 16 21 C -0.07 0.02 9.05 -39.46 -0.36 -0.34 16 22 C -0.10 0.25 10.04 -39.58 -0.40 -0.15 16 23 C -0.09 0.28 8.66 -39.57 -0.34 -0.07 16 24 C -0.12 0.23 5.27 -104.50 -0.55 -0.32 16 25 C -0.07 0.18 2.38 36.01 0.09 0.27 16 26 O -0.52 0.94 10.87 -35.23 -0.38 0.55 16 27 Si 0.69 -2.32 30.24 -169.99 -5.14 -7.47 16 28 H 0.07 -0.10 6.06 -51.93 -0.31 -0.42 16 29 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.10 -0.28 8.14 -51.93 -0.42 -0.71 16 31 H 0.15 -0.30 5.98 -51.92 -0.31 -0.61 16 32 H 0.16 -0.12 6.08 -51.92 -0.32 -0.43 16 33 H 0.11 -0.35 8.06 -51.93 -0.42 -0.77 16 34 H 0.10 -0.30 6.70 -51.93 -0.35 -0.64 16 35 H 0.05 -0.04 6.25 -51.93 -0.32 -0.37 16 36 H 0.06 -0.15 6.76 -51.93 -0.35 -0.51 16 37 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 38 H 0.11 0.04 8.10 -51.93 -0.42 -0.38 16 39 H 0.12 -0.22 7.01 -51.93 -0.36 -0.58 16 40 H 0.15 -0.16 8.06 -52.48 -0.42 -0.58 16 41 H 0.15 -0.76 8.06 -52.49 -0.42 -1.19 16 42 H 0.14 -0.70 4.85 -52.49 -0.25 -0.95 16 43 H 0.13 -0.35 7.82 -51.93 -0.41 -0.75 16 44 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 45 H -0.26 0.54 6.68 56.52 0.38 0.92 16 46 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 LS Contribution 389.79 15.07 5.87 5.87 Total: 0.00 -9.55 389.79 -8.93 -18.48 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -5.19 Total: -10.81 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.29 Total: 2.09 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -3.74 Total: -12.58 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.11 Total: -0.94 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: -5.14 Total: -7.47 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -0.55 Total: 5.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -9.55 -8.93 -18.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -268.338 kcal (2) G-P(sol) polarization free energy of solvation -9.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds