Wall clock time and date at job start Mon Mar 8 2021 11:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00021 * 2 1 4 4 C 1.39150 * 120.07260 * 270.27160 * 3 2 1 5 5 O 1.35994 * 120.07293 * 0.02562 * 4 3 2 6 6 S 1.52197 * 114.00002 * 270.26933 * 5 4 3 7 7 O 1.42100 * 104.27770 * 191.07165 * 6 5 4 8 8 O 1.42103 * 104.27941 * 318.93003 * 6 5 4 9 9 C 1.81402 * 104.44885 * 75.00346 * 6 5 4 10 10 C 1.52999 * 109.47385 * 180.02562 * 9 6 5 11 11 H 1.08998 * 112.84684 * 43.80203 * 10 9 6 12 12 C 1.53779 * 113.61387 * 174.99737 * 10 9 6 13 13 C 1.53780 * 87.08042 * 89.11644 * 12 10 9 14 14 O 1.42900 * 113.61194 * 270.79969 * 13 12 10 15 15 C 1.42898 * 113.99993 * 294.80933 * 14 13 12 16 16 C 1.52998 * 113.61898 * 139.97995 * 13 12 10 17 17 F 1.39900 * 109.47016 * 54.75252 * 16 13 12 18 18 F 1.39899 * 109.47370 * 174.75584 * 16 13 12 19 19 F 1.39908 * 109.47086 * 294.75405 * 16 13 12 20 20 C 1.53782 * 113.61360 * 272.49736 * 10 9 6 21 21 C 1.38573 * 119.85076 * 180.27426 * 4 3 2 22 22 C 1.38239 * 119.99933 * 359.72801 * 21 4 3 23 23 C 1.38254 * 120.14903 * 359.97438 * 22 21 4 24 24 C 1.38241 * 120.14318 * 0.04699 * 23 22 21 25 25 C 1.50705 * 119.99736 * 179.97438 * 24 23 22 26 26 O 1.42899 * 109.47140 * 104.99827 * 25 24 23 27 27 Si 1.86297 * 109.46898 * 344.99846 * 25 24 23 28 28 H 1.09004 * 109.47311 * 299.99734 * 1 2 3 29 29 H 1.08994 * 109.47245 * 60.00096 * 1 2 3 30 30 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46837 * 299.99714 * 9 6 5 32 32 H 1.09000 * 109.46933 * 59.99591 * 9 6 5 33 33 H 1.08997 * 113.61358 * 203.66120 * 12 10 9 34 34 H 1.08990 * 113.61503 * 334.48283 * 12 10 9 35 35 H 1.08998 * 109.47197 * 302.48010 * 15 14 13 36 36 H 1.09000 * 109.46719 * 62.48405 * 15 14 13 37 37 H 1.08999 * 109.47220 * 182.48146 * 15 14 13 38 38 H 1.09003 * 113.61504 * 25.43123 * 20 10 9 39 39 H 1.08997 * 113.61469 * 156.33429 * 20 10 9 40 40 H 1.08003 * 119.99737 * 179.74885 * 21 4 3 41 41 H 1.08000 * 119.92607 * 180.02562 * 22 21 4 42 42 H 1.07995 * 119.92505 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46738 * 224.99961 * 25 24 23 44 44 H 0.96695 * 113.99945 * 300.00365 * 26 25 24 45 45 H 1.48492 * 110.00158 * 58.68154 * 27 25 24 46 46 H 1.48508 * 109.99873 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3578 1.8356 -1.2042 5 8 2.0450 1.2352 -2.3836 6 16 3.1387 0.3251 -2.9242 7 8 2.7226 0.0263 -4.2496 8 8 4.3424 1.0390 -2.6776 9 6 3.0518 -1.1561 -1.8806 10 6 4.1159 -2.1595 -2.3296 11 1 5.0804 -1.6926 -2.5294 12 6 4.2083 -3.4034 -1.4301 13 6 3.1454 -4.0428 -2.3391 14 8 1.8037 -3.7822 -1.9220 15 6 1.4639 -4.3625 -0.6612 16 6 3.3996 -5.5228 -2.6322 17 9 3.5279 -6.2215 -1.4270 18 9 2.3261 -6.0448 -3.3619 19 9 4.5773 -5.6554 -3.3758 20 6 3.6414 -3.1010 -3.4491 21 6 2.9921 3.0676 -1.1988 22 6 3.3089 3.6768 0.0010 23 6 2.9939 3.0597 1.1974 24 6 2.3615 1.8304 1.1991 25 6 2.0202 1.1605 2.5053 26 8 0.6165 1.2755 2.7470 27 14 2.9581 1.9833 3.8888 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.2295 -0.8792 -0.8413 32 1 2.0641 -1.6078 -1.9725 33 1 5.1765 -3.9021 -1.4727 34 1 3.8656 -3.2308 -0.4099 35 1 1.6210 -5.4403 -0.7032 36 1 2.0940 -3.9335 0.1178 37 1 0.4174 -4.1564 -0.4366 38 1 2.8397 -2.6848 -4.0592 39 1 4.4547 -3.5171 -4.0436 40 1 3.2386 3.5521 -2.1321 41 1 3.8028 4.6372 0.0038 42 1 3.2426 3.5391 2.1327 43 1 2.2953 0.1069 2.4559 44 1 0.3005 2.1877 2.8030 45 1 2.6158 3.4271 3.9462 46 1 2.6306 1.3313 5.1823 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:45 Heat of formation + Delta-G solvation = -287.539450 kcal Electronic energy + Delta-G solvation = -41634.036052 eV Core-core repulsion = 35785.324818 eV Total energy + Delta-G solvation = -5848.711234 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.098 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -51.26370 -48.79448 -48.73265 -42.57567 -41.44275 -40.25822 -38.59935 -38.40738 -37.57652 -37.39642 -37.25194 -32.59181 -31.78696 -31.20554 -28.38836 -28.06402 -27.78441 -26.86401 -26.79161 -24.69345 -23.64200 -23.09292 -21.67585 -20.64868 -19.97566 -19.58984 -19.55624 -19.30894 -19.16427 -18.78302 -18.57041 -17.85510 -17.27099 -17.13517 -16.92166 -16.51587 -16.45722 -16.01421 -15.94761 -15.78881 -15.67997 -15.63628 -15.58896 -15.39662 -15.26017 -15.13235 -14.90888 -14.87568 -14.63706 -14.51209 -14.29140 -14.16405 -14.00973 -13.50012 -13.49486 -13.38183 -13.33201 -13.25633 -13.18536 -13.10125 -12.91701 -12.70087 -12.29600 -12.17564 -12.12790 -12.07806 -11.67341 -11.40912 -11.11914 -10.79962 -10.64220 -10.15396 -9.94691 -4.86679 -1.15186 -0.19342 -0.11093 0.91399 1.30746 1.51963 1.60993 1.99949 2.08431 2.09379 2.41952 2.54601 2.57030 2.62589 2.84632 2.86349 3.15578 3.24230 3.30851 3.33752 3.47957 3.52094 3.66598 3.81919 3.91672 4.01738 4.09545 4.21985 4.30162 4.31789 4.35849 4.39307 4.46308 4.49564 4.54268 4.57527 4.59965 4.67892 4.74912 4.77322 4.82872 4.85627 4.91867 4.98006 5.09634 5.15076 5.44894 5.72891 6.17711 6.48407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.334 6.334 3 C 0.104 3.896 4 C 0.019 3.981 5 O -0.667 6.667 6 S 2.588 3.412 7 O -0.965 6.965 8 O -0.969 6.969 9 C -0.605 4.605 10 C -0.097 4.097 11 H 0.124 0.876 12 C -0.124 4.124 13 C 0.039 3.961 14 O -0.344 6.344 15 C 0.004 3.996 16 C 0.433 3.567 17 F -0.182 7.182 18 F -0.188 7.188 19 F -0.176 7.176 20 C -0.138 4.138 21 C -0.091 4.091 22 C -0.092 4.092 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.077 4.077 26 O -0.539 6.539 27 Si 0.771 3.229 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.127 0.873 44 H 0.386 0.614 45 H -0.265 1.265 46 H -0.304 1.304 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 3.771 7.971 9.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.251 6.251 3 C 0.058 3.942 4 C -0.022 4.022 5 O -0.627 6.627 6 S 2.688 3.312 7 O -0.964 6.964 8 O -0.968 6.968 9 C -0.735 4.735 10 C -0.116 4.116 11 H 0.142 0.858 12 C -0.163 4.163 13 C -0.003 4.003 14 O -0.262 6.262 15 C -0.091 4.091 16 C 0.379 3.621 17 F -0.163 7.163 18 F -0.170 7.170 19 F -0.157 7.157 20 C -0.175 4.175 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.186 4.186 26 O -0.348 6.348 27 Si 0.676 3.324 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.195 0.805 42 H 0.185 0.815 43 H 0.145 0.855 44 H 0.236 0.764 45 H -0.191 1.191 46 H -0.232 1.232 Dipole moment (debyes) X Y Z Total from point charges 2.181 3.948 7.913 9.108 hybrid contribution -1.687 -0.764 -0.409 1.897 sum 0.494 3.184 7.504 8.167 Atomic orbital electron populations 1.23354 0.76630 1.05004 1.01755 1.85976 1.21749 1.23094 1.94275 1.18696 0.97791 0.87519 0.90240 1.18873 1.07353 0.96018 0.80004 1.85689 1.65436 1.68168 1.43364 1.05565 0.72873 0.77185 0.75532 1.93596 1.81358 1.85394 1.36016 1.93609 1.48167 1.69042 1.85970 1.30555 1.09815 1.16182 1.16923 1.21849 0.98250 0.94502 0.97017 0.85788 1.23618 0.98896 0.93983 0.99756 1.24046 0.87634 0.86418 1.02246 1.88043 1.25006 1.73917 1.39259 1.23292 1.03537 0.97933 0.84315 1.21488 0.74091 0.92220 0.74340 1.93179 1.95583 1.82109 1.45461 1.93189 1.56455 1.88978 1.78337 1.93174 1.48574 1.96569 1.77391 1.23633 1.03002 0.95064 0.95806 1.21645 0.95192 0.92400 1.01898 1.21498 0.98170 1.01597 0.89724 1.21672 0.95086 0.93123 1.00442 1.20669 1.01144 0.95600 0.94652 1.25212 0.87047 1.07597 0.98725 1.86608 1.21428 1.33354 1.93370 0.93856 0.88509 0.76514 0.73568 0.91072 0.94032 0.86951 0.81556 0.82399 0.85487 0.86794 0.93649 0.90864 0.87033 0.88742 0.84650 0.83511 0.80546 0.81471 0.85476 0.76409 1.19095 1.23246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 11.11 113.37 1.26 1.19 16 2 O -0.33 0.53 6.69 -79.64 -0.53 0.00 16 3 C 0.10 -0.07 4.85 22.57 0.11 0.04 16 4 C 0.02 0.05 4.81 22.57 0.11 0.16 16 5 O -0.67 -4.14 9.84 -60.50 -0.60 -4.73 16 6 S 2.59 15.79 5.16 -56.49 -0.29 15.50 16 7 O -0.97 -12.88 18.09 -118.57 -2.15 -15.03 16 8 O -0.97 -8.26 16.26 -118.57 -1.93 -10.19 16 9 C -0.60 0.71 4.09 71.98 0.29 1.01 16 10 C -0.10 0.28 3.84 -10.27 -0.04 0.24 16 11 H 0.12 -0.74 8.13 -2.39 -0.02 -0.76 16 12 C -0.12 0.66 6.52 31.12 0.20 0.86 16 13 C 0.04 0.00 0.85 -10.27 -0.01 -0.01 16 14 O -0.34 -0.33 8.36 -148.98 -1.25 -1.57 16 15 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 16 C 0.43 1.31 2.51 71.98 0.18 1.49 16 17 F -0.18 -0.51 15.24 44.97 0.69 0.18 16 18 F -0.19 -1.37 17.09 44.97 0.77 -0.60 16 19 F -0.18 -0.51 15.82 44.97 0.71 0.20 16 20 C -0.14 0.02 6.89 31.12 0.21 0.24 16 21 C -0.09 0.01 9.05 22.35 0.20 0.21 16 22 C -0.09 0.59 10.04 22.27 0.22 0.82 16 23 C -0.09 0.66 8.66 22.27 0.19 0.86 16 24 C -0.12 0.59 5.27 -19.78 -0.10 0.48 16 25 C -0.08 0.49 2.38 71.24 0.17 0.66 16 26 O -0.54 2.36 10.87 -148.98 -1.62 0.74 16 27 Si 0.77 -6.22 30.24 68.60 2.07 -4.14 16 28 H 0.07 -0.21 6.06 -2.38 -0.01 -0.22 16 29 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.17 -0.79 5.98 -2.39 -0.01 -0.81 16 32 H 0.16 -0.17 6.08 -2.39 -0.01 -0.18 16 33 H 0.13 -1.03 8.06 -2.39 -0.02 -1.05 16 34 H 0.11 -0.93 6.70 -2.39 -0.02 -0.94 16 35 H 0.04 -0.07 6.25 -2.39 -0.01 -0.08 16 36 H 0.07 -0.50 6.76 -2.39 -0.02 -0.52 16 37 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 39 H 0.14 -0.42 7.01 -2.39 -0.02 -0.43 16 40 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.18 -2.23 8.06 -2.91 -0.02 -2.25 16 42 H 0.17 -2.12 4.85 -2.91 -0.01 -2.14 16 43 H 0.13 -0.87 7.82 -2.38 -0.02 -0.88 16 44 H 0.39 -3.83 8.70 -74.06 -0.64 -4.47 16 45 H -0.27 1.73 6.68 99.48 0.66 2.39 16 46 H -0.30 -0.23 7.11 99.48 0.71 0.48 16 Total: 0.00 -23.96 389.79 0.49 -23.46 By element: Atomic # 1 Polarization: -13.65 SS G_CDS: 0.42 Total: -13.22 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.19 Total: 9.41 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -8.07 Total: -30.78 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 2.17 Total: -0.22 kcal Atomic # 14 Polarization: -6.22 SS G_CDS: 2.07 Total: -4.14 kcal Atomic # 16 Polarization: 15.79 SS G_CDS: -0.29 Total: 15.50 kcal Total: -23.96 0.49 -23.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -264.076 kcal (2) G-P(sol) polarization free energy of solvation -23.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds