Wall clock time and date at job start Mon Mar 8 2021 10:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 117.00348 * 2 1 4 4 C 1.38518 * 120.07472 * 265.29979 * 3 2 1 5 5 C 1.50700 * 120.00190 * 359.97438 * 4 3 2 6 6 O 1.42909 * 109.46854 * 75.00354 * 5 4 3 7 7 Si 1.86301 * 109.47378 * 195.00430 * 5 4 3 8 8 H 1.48503 * 109.46809 * 60.00464 * 7 5 4 9 9 H 1.48502 * 109.46881 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46917 * 300.00402 * 7 5 4 11 11 C 1.38288 * 119.99887 * 179.97438 * 4 3 2 12 12 C 1.38205 * 120.14494 * 0.02562 * 11 4 3 13 13 C 1.38288 * 120.14800 * 0.02562 * 12 11 4 14 14 C 1.38522 * 119.99840 * 359.70004 * 13 12 11 15 15 O 1.35990 * 120.07222 * 180.02562 * 14 13 12 16 16 S 1.52203 * 113.99880 * 271.70129 * 15 14 13 17 17 O 1.42096 * 106.40543 * 188.72695 * 16 15 14 18 18 O 1.42103 * 106.40202 * 321.64941 * 16 15 14 19 19 C 1.76199 * 107.21674 * 75.18381 * 16 15 14 20 20 C 1.38228 * 120.00329 * 263.00125 * 19 16 15 21 21 C 1.38236 * 120.00268 * 180.02562 * 20 19 16 22 22 C 1.38240 * 119.99976 * 359.97013 * 21 20 19 23 Xx 1.80997 * 120.00018 * 179.97438 * 22 21 20 24 23 F 9.76641 * 140.18835 * 265.92855 * 3 1 2 25 24 F 1.60999 * 89.99664 * 135.00339 * 23 22 21 26 25 F 1.60998 * 89.99999 * 315.00710 * 23 22 21 27 26 F 1.60990 * 90.00014 * 225.00291 * 23 22 21 28 27 F 1.61006 * 89.99880 * 45.00539 * 23 22 21 29 28 C 1.38234 * 119.99545 * 359.96400 * 22 21 20 30 29 C 1.38235 * 119.99708 * 82.72776 * 19 16 15 31 30 H 1.08998 * 109.47378 * 175.52343 * 1 2 3 32 31 H 1.08996 * 109.46735 * 295.52918 * 1 2 3 33 32 H 1.09003 * 109.47311 * 55.52457 * 1 2 3 34 33 H 1.09002 * 109.47544 * 315.01127 * 5 4 3 35 34 H 0.96702 * 113.99484 * 60.00551 * 6 5 4 36 35 H 1.07997 * 119.92280 * 179.97438 * 11 4 3 37 36 H 1.08003 * 119.92304 * 179.97438 * 12 11 4 38 37 H 1.07994 * 119.99940 * 179.97438 * 13 12 11 39 38 H 1.08004 * 119.99810 * 359.97347 * 20 19 16 40 39 H 1.08001 * 119.99923 * 179.97438 * 21 20 19 41 40 H 1.08000 * 119.99704 * 180.02562 * 29 22 21 42 41 H 1.08004 * 120.00085 * 0.20663 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.4492 1.7856 -1.1947 5 6 2.2037 1.0669 -2.4963 6 8 0.8204 1.1655 -2.8413 7 14 3.2355 1.8439 -3.8389 8 1 4.6730 1.7414 -3.4804 9 1 2.9931 1.1360 -5.1217 10 1 2.8625 3.2738 -3.9849 11 6 3.0765 3.0180 -1.1929 12 6 3.3036 3.6795 -0.0008 13 6 2.9050 3.1116 1.1954 14 6 2.2711 1.8800 1.2002 15 8 1.8780 1.3205 2.3757 16 16 2.9461 0.4646 3.0415 17 8 2.3112 -0.1965 4.1274 18 8 3.6165 -0.2258 1.9960 19 6 4.1277 1.5630 3.7500 20 6 5.2886 1.8658 3.0634 21 6 6.2159 2.7271 3.6195 22 6 5.9820 3.2861 4.8620 23 9 8.2757 5.4159 6.2373 24 9 6.0110 5.4176 6.0123 25 9 8.3818 3.4088 5.1683 26 9 7.0550 3.6531 7.0025 27 9 7.3378 5.1734 4.1781 28 6 4.8205 2.9842 5.5480 29 6 3.8912 2.1262 4.9900 30 1 -0.3634 -1.0245 -0.0802 31 1 -0.3633 0.4429 0.9273 32 1 -0.3634 0.5817 -0.8472 33 1 2.4775 0.0173 -2.3892 34 1 0.5067 2.0734 -2.9531 35 1 3.3903 3.4641 -2.1250 36 1 3.7941 4.6417 -0.0036 37 1 3.0840 3.6304 2.1255 38 1 5.4715 1.4288 2.0928 39 1 7.1230 2.9633 3.0831 40 1 4.6375 3.4212 6.5185 41 1 2.9837 1.8905 5.5261 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_204905_8643202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:18:38 Heat of formation + Delta-G solvation = 278.967219 kcal Electronic energy + Delta-G solvation = -39974.641841 eV Core-core repulsion = 33699.463779 eV Total energy + Delta-G solvation = -6275.178062 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 418.056 amu Computer time = 38.14 seconds Orbital eigenvalues (eV) -44.02950 -43.90253 -43.79271 -43.72877 -43.53999 -42.89616 -41.61104 -40.53154 -38.84894 -38.77621 -37.75046 -37.47996 -33.59847 -33.41056 -32.87082 -31.55035 -28.22052 -27.18089 -25.26053 -25.09722 -24.90080 -23.39734 -21.97347 -20.75031 -19.64946 -19.34811 -18.94864 -18.64288 -17.90428 -17.64207 -17.11103 -17.05026 -16.79707 -16.46408 -16.40375 -16.03183 -15.95194 -15.85919 -15.75589 -15.52615 -15.03704 -14.82195 -14.61717 -14.51172 -14.41501 -14.30794 -14.20515 -14.02943 -13.86019 -13.82411 -13.81243 -13.79605 -13.66925 -13.63192 -13.58516 -13.51550 -13.45903 -13.32721 -13.23633 -12.89884 -12.86148 -12.41740 -12.32018 -12.06033 -11.90708 -11.85916 -11.55452 -11.48046 -11.28168 -11.05274 -10.71587 -10.55256 -10.21614 -4.97819 -4.46298 -3.70497 -1.84724 -1.46756 -1.16030 -0.51277 -0.45062 0.64638 0.89433 1.06974 1.18168 1.31736 1.71688 1.73056 2.01514 2.09745 2.28588 2.38722 2.41027 2.81547 2.84854 3.00370 3.25509 3.31891 3.34725 3.37657 3.41380 3.54233 3.62042 3.64714 3.70668 3.95072 3.98329 4.21160 4.21294 4.25903 4.29946 4.44946 4.49980 4.64882 4.69584 4.75382 5.03748 6.07046 6.27286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.162 3.838 4 C -0.122 4.122 5 C -0.081 4.081 6 O -0.532 6.532 7 Si 0.950 3.050 8 H -0.244 1.244 9 H -0.247 1.247 10 H -0.249 1.249 11 C -0.089 4.089 12 C -0.100 4.100 13 C -0.109 4.109 14 C 0.030 3.970 15 O -0.644 6.644 16 S 2.678 3.322 17 O -0.905 6.905 18 O -0.917 6.917 19 C -0.704 4.704 20 C 0.038 3.962 21 C -0.129 4.129 22 C 0.429 3.571 23 F -0.110 7.110 24 F -0.172 7.172 25 F -0.167 7.167 26 F -0.166 7.166 27 F -0.173 7.173 28 C -0.129 4.129 29 C 0.042 3.958 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.375 0.625 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.197 0.803 39 H 0.198 0.802 40 H 0.198 0.802 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -0.614 -7.415 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.240 6.240 3 C 0.115 3.885 4 C -0.123 4.123 5 C -0.191 4.191 6 O -0.337 6.337 7 Si 0.772 3.228 8 H -0.167 1.167 9 H -0.170 1.170 10 H -0.173 1.173 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.129 4.129 14 C -0.012 4.012 15 O -0.603 6.603 16 S 2.764 3.236 17 O -0.903 6.903 18 O -0.916 6.916 19 C -0.783 4.783 20 C 0.020 3.980 21 C -0.147 4.147 22 C 0.423 3.577 23 F -0.110 7.110 24 F -0.170 7.170 25 F -0.165 7.165 26 F -0.164 7.164 27 F -0.171 7.171 28 C -0.147 4.147 29 C 0.024 3.976 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.222 0.778 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.213 0.787 39 H 0.215 0.785 40 H 0.214 0.786 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.599 -1.635 -8.058 10.543 hybrid contribution 1.075 1.969 1.726 2.831 sum -5.524 0.334 -6.332 8.410 Atomic orbital electron populations 1.23284 0.76580 1.04713 1.01772 1.86050 1.21232 1.22676 1.94037 1.18499 0.94586 0.85575 0.89828 1.20694 1.00851 0.95212 0.95583 1.25058 0.89888 1.06872 0.97271 1.86588 1.23118 1.32365 1.91581 0.85691 0.79249 0.79493 0.78415 1.16689 1.16997 1.17340 1.21434 0.96131 0.93476 0.99749 1.21088 0.99451 1.00761 0.90509 1.21373 0.97773 0.92798 1.00975 1.18556 1.06477 0.95264 0.80921 1.85761 1.60085 1.73410 1.41022 1.03128 0.72854 0.73151 0.74438 1.93706 1.73347 1.68998 1.54240 1.93716 1.74938 1.69365 1.53563 1.32217 1.17124 1.21308 1.07618 1.21357 0.87448 0.89507 0.99690 1.22102 1.04395 0.96268 0.91894 1.27064 0.68955 0.75252 0.86473 2.00000 1.80806 1.47223 1.82958 1.99921 1.56567 1.66741 1.93751 1.99923 1.79713 1.37543 1.99330 1.99923 1.98383 1.46033 1.72110 1.99921 1.86113 1.73360 1.57743 1.22107 0.88266 0.99079 1.05253 1.21282 0.97045 0.87876 0.91418 0.87925 0.93105 0.91345 0.85261 0.77779 0.83903 0.83188 0.83629 0.78652 0.78536 0.78551 0.78821 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 785. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.13 101.05 1.12 1.08 16 2 O -0.32 -0.13 9.32 -35.23 -0.33 -0.46 16 3 C 0.16 -0.18 5.04 -39.12 -0.20 -0.37 16 4 C -0.12 0.35 5.27 -104.50 -0.55 -0.20 16 5 C -0.08 0.25 2.37 36.01 0.09 0.34 16 6 O -0.53 1.61 11.52 -35.23 -0.41 1.20 16 7 Si 0.95 -3.52 25.49 -169.99 -4.33 -7.85 16 8 H -0.24 0.76 7.11 56.52 0.40 1.17 16 9 H -0.25 0.41 7.11 56.52 0.40 0.82 16 10 H -0.25 1.11 6.73 56.52 0.38 1.49 16 11 C -0.09 0.43 8.66 -39.57 -0.34 0.09 16 12 C -0.10 0.58 10.04 -39.58 -0.40 0.18 16 13 C -0.11 0.55 8.74 -39.46 -0.34 0.20 16 14 C 0.03 -0.07 4.79 -39.12 -0.19 -0.26 16 15 O -0.64 1.38 9.94 -54.08 -0.54 0.84 16 16 S 2.68 -5.05 5.42 -107.50 -0.58 -5.63 16 17 O -0.90 -0.71 17.48 -66.81 -1.17 -1.88 16 18 O -0.92 0.00 15.32 -67.01 -1.03 -1.03 16 19 C -0.70 3.47 5.02 -39.59 -0.20 3.27 16 20 C 0.04 -0.23 8.94 -39.59 -0.35 -0.58 16 21 C -0.13 0.58 8.62 -39.58 -0.34 0.24 16 22 C 0.43 -0.73 4.82 -39.58 -0.19 -0.92 16 23 F -0.11 -1.06 16.65 2.25 0.04 -1.02 16 24 F -0.17 -0.90 15.31 2.25 0.03 -0.86 16 25 F -0.17 -0.94 15.31 2.25 0.03 -0.90 16 26 F -0.17 -0.95 15.31 2.25 0.03 -0.92 16 27 F -0.17 -0.86 15.31 2.25 0.03 -0.83 16 28 C -0.13 0.56 8.62 -39.58 -0.34 0.22 16 29 C 0.04 -0.25 9.52 -39.58 -0.38 -0.63 16 30 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 -0.16 6.74 -51.93 -0.35 -0.51 16 33 H 0.13 -0.34 7.82 -51.93 -0.41 -0.74 16 34 H 0.38 -2.46 8.70 45.56 0.40 -2.06 16 35 H 0.14 -0.91 4.88 -52.49 -0.26 -1.17 16 36 H 0.15 -1.22 8.06 -52.48 -0.42 -1.64 16 37 H 0.15 -1.10 7.83 -52.49 -0.41 -1.52 16 38 H 0.20 -1.59 7.48 -52.48 -0.39 -1.99 16 39 H 0.20 -1.10 7.40 -52.49 -0.39 -1.49 16 40 H 0.20 -1.04 7.40 -52.49 -0.39 -1.43 16 41 H 0.19 -1.65 7.79 -52.48 -0.41 -2.06 16 LS Contribution 385.31 15.07 5.81 5.81 Total: 0.00 -15.52 385.31 -7.70 -23.23 By element: Atomic # 1 Polarization: -9.67 SS G_CDS: -2.69 Total: -12.36 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.61 Total: 2.66 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: -3.47 Total: -1.32 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.18 Total: -4.53 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: -4.33 Total: -7.85 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -0.58 Total: -5.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -15.52 -7.70 -23.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_8643202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 302.194 kcal (2) G-P(sol) polarization free energy of solvation -15.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 286.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 278.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.14 seconds