Wall clock time and date at job start Mon Mar 8 2021 10:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 117.00348 * 2 1 4 4 C 1.38518 * 120.07472 * 265.29979 * 3 2 1 5 5 C 1.50700 * 120.00190 * 359.97438 * 4 3 2 6 6 O 1.42909 * 109.46854 * 75.00354 * 5 4 3 7 7 Si 1.86301 * 109.47378 * 195.00430 * 5 4 3 8 8 H 1.48503 * 109.46809 * 60.00464 * 7 5 4 9 9 H 1.48502 * 109.46881 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46917 * 300.00402 * 7 5 4 11 11 C 1.38288 * 119.99887 * 179.97438 * 4 3 2 12 12 C 1.38205 * 120.14494 * 0.02562 * 11 4 3 13 13 C 1.38288 * 120.14800 * 0.02562 * 12 11 4 14 14 C 1.38522 * 119.99840 * 359.70004 * 13 12 11 15 15 O 1.35990 * 120.07222 * 180.02562 * 14 13 12 16 16 S 1.52203 * 113.99880 * 271.70129 * 15 14 13 17 17 O 1.42096 * 106.40543 * 188.72695 * 16 15 14 18 18 O 1.42103 * 106.40202 * 321.64941 * 16 15 14 19 19 C 1.76199 * 107.21674 * 75.18381 * 16 15 14 20 20 C 1.38228 * 120.00329 * 263.00125 * 19 16 15 21 21 C 1.38236 * 120.00268 * 180.02562 * 20 19 16 22 22 C 1.38240 * 119.99976 * 359.97013 * 21 20 19 23 Xx 1.80997 * 120.00018 * 179.97438 * 22 21 20 24 23 F 9.76641 * 140.18835 * 265.92855 * 3 1 2 25 24 F 1.60999 * 89.99664 * 135.00339 * 23 22 21 26 25 F 1.60998 * 89.99999 * 315.00710 * 23 22 21 27 26 F 1.60990 * 90.00014 * 225.00291 * 23 22 21 28 27 F 1.61006 * 89.99880 * 45.00539 * 23 22 21 29 28 C 1.38234 * 119.99545 * 359.96400 * 22 21 20 30 29 C 1.38235 * 119.99708 * 82.72776 * 19 16 15 31 30 H 1.08998 * 109.47378 * 175.52343 * 1 2 3 32 31 H 1.08996 * 109.46735 * 295.52918 * 1 2 3 33 32 H 1.09003 * 109.47311 * 55.52457 * 1 2 3 34 33 H 1.09002 * 109.47544 * 315.01127 * 5 4 3 35 34 H 0.96702 * 113.99484 * 60.00551 * 6 5 4 36 35 H 1.07997 * 119.92280 * 179.97438 * 11 4 3 37 36 H 1.08003 * 119.92304 * 179.97438 * 12 11 4 38 37 H 1.07994 * 119.99940 * 179.97438 * 13 12 11 39 38 H 1.08004 * 119.99810 * 359.97347 * 20 19 16 40 39 H 1.08001 * 119.99923 * 179.97438 * 21 20 19 41 40 H 1.08000 * 119.99704 * 180.02562 * 29 22 21 42 41 H 1.08004 * 120.00085 * 0.20663 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.4492 1.7856 -1.1947 5 6 2.2037 1.0669 -2.4963 6 8 0.8204 1.1655 -2.8413 7 14 3.2355 1.8439 -3.8389 8 1 4.6730 1.7414 -3.4804 9 1 2.9931 1.1360 -5.1217 10 1 2.8625 3.2738 -3.9849 11 6 3.0765 3.0180 -1.1929 12 6 3.3036 3.6795 -0.0008 13 6 2.9050 3.1116 1.1954 14 6 2.2711 1.8800 1.2002 15 8 1.8780 1.3205 2.3757 16 16 2.9461 0.4646 3.0415 17 8 2.3112 -0.1965 4.1274 18 8 3.6165 -0.2258 1.9960 19 6 4.1277 1.5630 3.7500 20 6 5.2886 1.8658 3.0634 21 6 6.2159 2.7271 3.6195 22 6 5.9820 3.2861 4.8620 23 9 8.2757 5.4159 6.2373 24 9 6.0110 5.4176 6.0123 25 9 8.3818 3.4088 5.1683 26 9 7.0550 3.6531 7.0025 27 9 7.3378 5.1734 4.1781 28 6 4.8205 2.9842 5.5480 29 6 3.8912 2.1262 4.9900 30 1 -0.3634 -1.0245 -0.0802 31 1 -0.3633 0.4429 0.9273 32 1 -0.3634 0.5817 -0.8472 33 1 2.4775 0.0173 -2.3892 34 1 0.5067 2.0734 -2.9531 35 1 3.3903 3.4641 -2.1250 36 1 3.7941 4.6417 -0.0036 37 1 3.0840 3.6304 2.1255 38 1 5.4715 1.4288 2.0928 39 1 7.1230 2.9633 3.0831 40 1 4.6375 3.4212 6.5185 41 1 2.9837 1.8905 5.5261 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_204905_8643202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:17:59 Heat of formation + Delta-G solvation = 272.032543 kcal Electronic energy + Delta-G solvation = -39974.942551 eV Core-core repulsion = 33699.463779 eV Total energy + Delta-G solvation = -6275.478772 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 418.056 amu Computer time = 38.43 seconds Orbital eigenvalues (eV) -44.46017 -44.31118 -44.26560 -44.16878 -43.64991 -42.63403 -41.32817 -40.28630 -38.77135 -38.54282 -37.46688 -37.39105 -33.27296 -33.13124 -32.53834 -31.23631 -28.02297 -26.87855 -24.95100 -24.81777 -24.61325 -23.06192 -21.73125 -20.49990 -19.39335 -19.16472 -18.71485 -18.38075 -17.62569 -17.35426 -16.86005 -16.70499 -16.58821 -16.24095 -16.09892 -15.78979 -15.68698 -15.59993 -15.53181 -15.36308 -15.18775 -14.82641 -14.74295 -14.56578 -14.48674 -14.33020 -14.26819 -14.26200 -14.23099 -14.10841 -13.98028 -13.78748 -13.68605 -13.59318 -13.52764 -13.48885 -13.37087 -13.25609 -13.20023 -12.72858 -12.66052 -12.38150 -12.12170 -12.06335 -12.03040 -11.60492 -11.59034 -11.47178 -11.12071 -11.10175 -10.42192 -10.21038 -9.89401 -5.33589 -4.86740 -3.48098 -1.60579 -1.27660 -0.79247 -0.18163 -0.12124 0.88145 1.18163 1.36521 1.47297 1.59223 1.99756 2.08654 2.20930 2.36631 2.57298 2.65391 2.67733 3.10496 3.20507 3.33056 3.62667 3.64069 3.67917 3.77398 3.83316 3.91340 3.95361 4.06619 4.16400 4.29404 4.33417 4.38295 4.48499 4.56136 4.58521 4.76393 4.82430 4.90149 5.07696 5.13541 5.45629 6.27865 6.73622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.132 3.868 4 C -0.131 4.131 5 C -0.084 4.084 6 O -0.547 6.547 7 Si 0.985 3.015 8 H -0.249 1.249 9 H -0.282 1.282 10 H -0.228 1.228 11 C -0.087 4.087 12 C -0.090 4.090 13 C -0.104 4.104 14 C 0.011 3.989 15 O -0.644 6.644 16 S 2.689 3.311 17 O -0.938 6.938 18 O -0.941 6.941 19 C -0.697 4.697 20 C 0.058 3.942 21 C -0.120 4.120 22 C 0.388 3.612 23 F -0.204 7.204 24 F -0.158 7.158 25 F -0.162 7.162 26 F -0.165 7.165 27 F -0.153 7.153 28 C -0.124 4.124 29 C 0.062 3.938 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.390 0.610 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.222 0.778 39 H 0.207 0.793 40 H 0.203 0.797 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 0.411 -8.236 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.263 6.263 3 C 0.085 3.915 4 C -0.132 4.132 5 C -0.194 4.194 6 O -0.355 6.355 7 Si 0.807 3.193 8 H -0.173 1.173 9 H -0.207 1.207 10 H -0.151 1.151 11 C -0.106 4.106 12 C -0.108 4.108 13 C -0.124 4.124 14 C -0.031 4.031 15 O -0.603 6.603 16 S 2.780 3.220 17 O -0.936 6.936 18 O -0.939 6.939 19 C -0.779 4.779 20 C 0.041 3.959 21 C -0.138 4.138 22 C 0.382 3.618 23 F -0.204 7.204 24 F -0.157 7.157 25 F -0.161 7.161 26 F -0.163 7.163 27 F -0.151 7.151 28 C -0.142 4.142 29 C 0.045 3.955 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.238 0.762 39 H 0.223 0.777 40 H 0.220 0.780 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.201 -0.619 -8.876 11.446 hybrid contribution 0.955 1.460 1.736 2.461 sum -6.247 0.841 -7.139 9.524 Atomic orbital electron populations 1.23356 0.76372 1.05082 1.01967 1.86010 1.21831 1.24223 1.94276 1.18841 0.95786 0.85726 0.91101 1.20766 1.01466 0.96071 0.94911 1.25116 0.90001 1.06305 0.97952 1.86548 1.23375 1.33908 1.91626 0.85225 0.78355 0.79887 0.75853 1.17296 1.20730 1.15122 1.21695 0.95187 0.92580 1.01132 1.21505 0.98195 1.01498 0.89583 1.21751 0.96406 0.91546 1.02653 1.18833 1.07761 0.96277 0.80253 1.85736 1.59906 1.73398 1.41284 1.02499 0.72666 0.73230 0.73650 1.93668 1.74275 1.70477 1.55200 1.93688 1.75413 1.70563 1.54283 1.31930 1.16802 1.21083 1.08071 1.21648 0.86112 0.88029 1.00147 1.22186 1.04666 0.95869 0.91068 1.28042 0.69229 0.76570 0.87923 2.00000 1.73391 1.99006 1.47961 1.99921 1.45969 1.95877 1.73890 1.99920 1.76397 1.83980 1.55778 1.99921 1.71911 1.95270 1.49217 1.99919 1.92682 1.98236 1.24281 1.22194 0.87644 0.99032 1.05325 1.21609 0.97046 0.86103 0.90787 0.87614 0.93053 0.90920 0.86847 0.76119 0.82170 0.80002 0.80836 0.76176 0.77655 0.77982 0.76109 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 796. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.13 113.37 1.26 1.21 16 2 O -0.35 -0.75 9.32 -78.69 -0.73 -1.48 16 3 C 0.13 -0.27 5.04 22.57 0.11 -0.16 16 4 C -0.13 0.81 5.27 -19.79 -0.10 0.71 16 5 C -0.08 0.48 2.37 71.24 0.17 0.65 16 6 O -0.55 2.96 11.52 -148.98 -1.72 1.24 16 7 Si 0.98 -7.67 25.49 68.60 1.75 -5.92 16 8 H -0.25 1.75 7.11 99.48 0.71 2.46 16 9 H -0.28 0.59 7.11 99.48 0.71 1.29 16 10 H -0.23 2.57 6.73 99.48 0.67 3.24 16 11 C -0.09 1.03 8.66 22.27 0.19 1.22 16 12 C -0.09 1.34 10.04 22.27 0.22 1.56 16 13 C -0.10 1.32 8.74 22.35 0.20 1.52 16 14 C 0.01 -0.06 4.79 22.57 0.11 0.05 16 15 O -0.64 3.08 9.94 -60.58 -0.60 2.47 16 16 S 2.69 -11.68 5.42 -56.49 -0.31 -11.98 16 17 O -0.94 -1.47 17.48 -118.78 -2.08 -3.54 16 18 O -0.94 0.01 15.32 -118.60 -1.82 -1.81 16 19 C -0.70 8.28 5.02 22.27 0.11 8.39 16 20 C 0.06 -0.84 8.94 22.27 0.20 -0.64 16 21 C -0.12 1.33 8.62 22.27 0.19 1.52 16 22 C 0.39 -1.80 4.82 22.27 0.11 -1.69 16 23 F -0.20 -4.53 16.65 44.97 0.75 -3.78 16 24 F -0.16 -1.66 15.31 44.97 0.69 -0.97 16 25 F -0.16 -1.90 15.31 44.97 0.69 -1.21 16 26 F -0.16 -2.01 15.31 44.97 0.69 -1.32 16 27 F -0.15 -1.46 15.31 44.97 0.69 -0.77 16 28 C -0.12 1.29 8.62 22.27 0.19 1.48 16 29 C 0.06 -0.88 9.52 22.27 0.21 -0.67 16 30 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 -0.25 6.74 -2.39 -0.02 -0.27 16 33 H 0.11 -0.37 7.82 -2.39 -0.02 -0.39 16 34 H 0.39 -5.09 8.70 -74.06 -0.64 -5.74 16 35 H 0.16 -2.51 4.88 -2.91 -0.01 -2.52 16 36 H 0.18 -3.82 8.06 -2.91 -0.02 -3.84 16 37 H 0.17 -3.29 7.83 -2.91 -0.02 -3.31 16 38 H 0.22 -4.21 7.48 -2.91 -0.02 -4.23 16 39 H 0.21 -2.72 7.40 -2.91 -0.02 -2.74 16 40 H 0.20 -2.40 7.40 -2.91 -0.02 -2.42 16 41 H 0.22 -4.32 7.79 -2.91 -0.02 -4.34 16 Total: 0.00 -39.70 385.31 2.39 -37.30 By element: Atomic # 1 Polarization: -24.59 SS G_CDS: 1.22 Total: -23.37 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 3.17 Total: 15.16 kcal Atomic # 8 Polarization: 3.83 SS G_CDS: -6.94 Total: -3.12 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 3.50 Total: -8.06 kcal Atomic # 14 Polarization: -7.67 SS G_CDS: 1.75 Total: -5.92 kcal Atomic # 16 Polarization: -11.68 SS G_CDS: -0.31 Total: -11.98 kcal Total: -39.70 2.39 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_204905_8643202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 309.335 kcal (2) G-P(sol) polarization free energy of solvation -39.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 269.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 272.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.43 seconds