Wall clock time and date at job start Mon Mar 8 2021 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99984 * 2 1 4 4 O 1.20832 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99980 * 179.97438 * 3 2 1 6 6 H 1.08991 * 112.84577 * 48.80674 * 5 3 2 7 7 C 1.53784 * 113.61085 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.07911 * 140.06659 * 7 5 3 9 9 H 1.09007 * 113.61532 * 89.19799 * 8 7 5 10 10 S 1.81405 * 113.61470 * 220.01719 * 8 7 5 11 11 O 1.42093 * 110.54143 * 68.37471 * 10 8 7 12 12 O 1.42106 * 110.53877 * 291.62367 * 10 8 7 13 13 O 1.52198 * 104.44768 * 179.97438 * 10 8 7 14 14 C 1.35930 * 114.00073 * 75.00028 * 13 10 8 15 15 C 1.38821 * 120.05975 * 89.99606 * 14 13 10 16 16 Cl 1.73594 * 120.03655 * 0.25394 * 15 14 13 17 17 C 1.38255 * 119.92114 * 179.97438 * 15 14 13 18 18 C 1.38239 * 120.04379 * 359.97438 * 17 15 14 19 19 C 1.50703 * 119.94157 * 180.02562 * 18 17 15 20 20 O 1.42907 * 109.46853 * 65.00246 * 19 18 17 21 21 Si 1.86293 * 109.47368 * 184.99955 * 19 18 17 22 22 C 1.38277 * 120.12259 * 0.04513 * 18 17 15 23 23 C 1.38158 * 120.07364 * 359.95294 * 22 18 17 24 24 C 1.53776 * 113.69063 * 277.53504 * 5 3 2 25 25 H 1.09000 * 109.46962 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46728 * 59.99989 * 1 2 3 27 27 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08996 * 113.61896 * 25.51559 * 7 5 3 29 29 H 1.09000 * 113.68464 * 254.62072 * 7 5 3 30 30 H 1.08002 * 119.97419 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.47394 * 305.00420 * 19 18 17 32 32 H 0.96692 * 114.00165 * 180.02562 * 20 19 18 33 33 H 1.48498 * 110.00109 * 178.68191 * 21 19 18 34 34 H 1.48505 * 110.00111 * 300.00153 * 21 19 18 35 35 H 1.08004 * 119.96529 * 179.97438 * 22 18 17 36 36 H 1.08002 * 120.01699 * 179.97438 * 23 22 18 37 37 H 1.09004 * 113.61146 * 105.46065 * 24 5 3 38 38 H 1.09006 * 113.61932 * 334.56045 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0239 0.6362 -0.7549 7 6 4.1077 2.7143 0.0011 8 6 5.1820 2.2261 0.9873 9 1 6.0820 1.8492 0.5012 10 16 5.5413 3.4092 2.3147 11 8 4.4305 3.5253 3.1931 12 8 6.1869 4.5627 1.7932 13 8 6.6122 2.7257 3.1529 14 6 7.8456 2.7264 2.5816 15 6 8.7244 3.7730 2.8257 16 17 8.2519 5.0796 3.8664 17 6 9.9784 3.7706 2.2436 18 6 10.3570 2.7269 1.4199 19 6 11.7247 2.7263 0.7870 20 8 12.7211 2.6220 1.8062 21 14 11.8709 1.2774 -0.3747 22 6 9.4830 1.6838 1.1752 23 6 8.2287 1.6811 1.7543 24 6 4.1925 1.1231 1.3969 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.4177 3.4402 0.4312 29 1 4.5100 3.0311 -0.9611 30 1 10.6629 4.5841 2.4333 31 1 11.8686 3.6532 0.2318 32 1 13.6279 2.6161 1.4706 33 1 13.2038 1.2835 -1.0293 34 1 11.6767 0.0074 0.3702 35 1 9.7813 0.8699 0.5309 36 1 7.5466 0.8661 1.5623 37 1 4.6631 0.1537 1.5613 38 1 3.5256 1.4141 2.2085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2163008_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:20 Heat of formation + Delta-G solvation = -150.470163 kcal Electronic energy + Delta-G solvation = -28721.347361 eV Core-core repulsion = 24265.528748 eV Total energy + Delta-G solvation = -4455.818612 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.040 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41412 -41.92277 -40.03093 -39.66379 -38.30456 -37.95321 -37.50035 -37.35374 -37.17106 -32.59059 -32.36213 -29.95300 -27.84774 -27.36664 -27.14653 -24.68734 -23.74880 -23.20863 -21.75276 -20.92963 -19.87516 -19.30005 -18.86602 -18.76278 -18.40635 -17.86158 -17.63541 -17.51557 -17.00019 -16.75534 -16.41934 -15.96467 -15.80423 -15.23270 -14.91028 -14.83237 -14.63305 -14.46575 -14.20099 -14.10732 -13.99302 -13.88576 -13.72033 -13.50980 -13.23572 -13.16576 -13.13845 -12.98617 -12.79727 -12.77131 -12.47784 -12.18583 -12.08936 -11.89868 -11.83145 -11.70429 -11.31254 -10.80299 -10.33270 -10.05493 -5.19925 -1.23667 -0.37636 -0.27607 0.73951 0.91161 1.04728 1.08058 1.38045 1.60951 1.73425 1.92774 2.39168 2.50312 2.75144 2.92551 2.96289 3.04041 3.20659 3.37180 3.44495 3.50035 3.69380 3.77706 3.82549 3.95570 4.03456 4.13966 4.20683 4.21595 4.24010 4.27808 4.36037 4.42619 4.47181 4.55347 4.57978 4.72804 4.75621 4.90155 5.22670 5.31408 6.19066 6.64510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.139 0.861 7 C -0.085 4.085 8 C -0.655 4.655 9 H 0.164 0.836 10 S 2.591 3.409 11 O -0.912 6.912 12 O -0.933 6.933 13 O -0.654 6.654 14 C 0.077 3.923 15 C -0.011 4.011 16 Cl -0.028 7.028 17 C -0.067 4.067 18 C -0.042 4.042 19 C -0.082 4.082 20 O -0.533 6.533 21 Si 0.686 3.314 22 C -0.096 4.096 23 C -0.112 4.112 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.385 0.615 33 H -0.256 1.256 34 H -0.250 1.250 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -5.389 -6.619 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.157 0.843 7 C -0.124 4.124 8 C -0.761 4.761 9 H 0.181 0.819 10 S 2.685 3.315 11 O -0.910 6.910 12 O -0.931 6.931 13 O -0.612 6.612 14 C 0.035 3.965 15 C -0.040 4.040 16 Cl 0.002 6.998 17 C -0.085 4.085 18 C -0.043 4.043 19 C -0.191 4.191 20 O -0.341 6.341 21 Si 0.587 3.413 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.171 0.829 31 H 0.105 0.895 32 H 0.234 0.766 33 H -0.181 1.181 34 H -0.175 1.175 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.125 0.875 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.071 -5.218 -5.722 8.331 hybrid contribution 0.631 0.032 0.318 0.707 sum 3.703 -5.186 -5.405 8.356 Atomic orbital electron populations 1.23364 0.75656 1.04138 1.02917 1.86501 1.23947 1.32998 1.83751 1.23459 0.91514 0.81679 0.72499 1.90717 1.66837 1.36387 1.44553 1.22429 0.87933 1.00137 1.01046 0.84319 1.22614 0.93889 0.95907 0.99973 1.32310 1.08220 1.16575 1.19039 0.81866 1.05799 0.74612 0.75457 0.75624 1.93677 1.51300 1.84883 1.61110 1.93696 1.72072 1.46235 1.81088 1.85769 1.27605 1.85352 1.62475 1.17750 0.82664 0.96829 0.99293 1.21144 0.94978 0.90744 0.97143 1.98441 1.91725 1.45908 1.63754 1.20951 0.93321 0.99512 0.94755 1.19427 0.94502 0.93799 0.96577 1.24873 0.86912 1.11055 0.96295 1.86586 1.18137 1.96219 1.33157 0.95091 0.87075 0.76977 0.82203 1.21000 0.92729 0.98050 0.99563 1.21250 0.98309 0.97146 0.96521 1.22666 0.95551 0.98466 0.96448 0.91547 0.91618 0.87723 0.87328 0.87443 0.82912 0.89494 0.76580 1.18061 1.17452 0.83249 0.82566 0.87508 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.22 10.57 -39.25 -0.41 -0.64 16 3 C 0.47 0.57 7.49 36.01 0.27 0.84 16 4 O -0.50 -2.21 15.65 -18.75 -0.29 -2.50 16 5 C -0.10 0.21 4.26 -90.96 -0.39 -0.18 16 6 H 0.14 -0.72 8.14 -51.93 -0.42 -1.15 16 7 C -0.09 0.15 6.99 -25.92 -0.18 -0.03 16 8 C -0.66 1.61 4.03 -25.94 -0.10 1.51 16 9 H 0.16 -0.99 6.11 -51.93 -0.32 -1.31 16 10 S 2.59 5.82 5.12 -107.50 -0.55 5.27 16 11 O -0.91 -5.19 17.27 -67.04 -1.16 -6.35 16 12 O -0.93 -3.77 15.20 -67.03 -1.02 -4.79 16 13 O -0.65 -1.35 9.51 -51.85 -0.49 -1.85 16 14 C 0.08 0.08 4.79 -39.20 -0.19 -0.10 16 15 C -0.01 -0.02 5.65 -39.36 -0.22 -0.25 16 16 Cl -0.03 -0.11 27.29 -51.86 -1.41 -1.52 16 17 C -0.07 -0.02 9.46 -39.57 -0.37 -0.39 16 18 C -0.04 0.06 5.38 -104.61 -0.56 -0.51 16 19 C -0.08 0.23 2.79 36.01 0.10 0.33 16 20 O -0.53 0.70 12.81 -35.23 -0.45 0.25 16 21 Si 0.69 -2.64 29.84 -169.99 -5.07 -7.71 16 22 C -0.10 0.27 8.66 -39.60 -0.34 -0.07 16 23 C -0.11 0.27 8.50 -39.44 -0.34 -0.06 16 24 C -0.09 0.24 7.19 -25.94 -0.19 0.05 16 25 H 0.07 -0.04 8.13 -51.93 -0.42 -0.47 16 26 H 0.07 -0.06 8.13 -51.93 -0.42 -0.49 16 27 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 28 H 0.11 0.00 7.40 -51.93 -0.38 -0.38 16 29 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 30 H 0.15 -0.13 8.06 -52.49 -0.42 -0.56 16 31 H 0.09 -0.40 7.96 -51.93 -0.41 -0.81 16 32 H 0.39 -1.99 8.74 45.56 0.40 -1.59 16 33 H -0.26 0.36 7.11 56.52 0.40 0.76 16 34 H -0.25 0.29 7.05 56.52 0.40 0.68 16 35 H 0.15 -0.82 4.86 -52.48 -0.26 -1.07 16 36 H 0.16 -0.97 7.25 -52.49 -0.38 -1.35 16 37 H 0.11 -0.57 8.14 -51.93 -0.42 -1.00 16 38 H 0.11 -0.11 7.38 -51.93 -0.38 -0.50 16 LS Contribution 349.75 15.07 5.27 5.27 Total: 0.00 -12.28 349.75 -10.94 -23.22 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: -3.89 Total: -10.85 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.45 Total: 2.18 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -3.83 Total: -15.86 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: -5.07 Total: -7.71 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -0.55 Total: 5.27 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.41 Total: -1.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -12.28 -10.94 -23.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2163008_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.249 kcal (2) G-P(sol) polarization free energy of solvation -12.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds