Wall clock time and date at job start Mon Mar 8 2021 12:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99984 * 2 1 4 4 O 1.20832 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99980 * 179.97438 * 3 2 1 6 6 H 1.08991 * 112.84577 * 48.80674 * 5 3 2 7 7 C 1.53784 * 113.61085 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.07911 * 140.06659 * 7 5 3 9 9 H 1.09007 * 113.61532 * 89.19799 * 8 7 5 10 10 S 1.81405 * 113.61470 * 220.01719 * 8 7 5 11 11 O 1.42093 * 110.54143 * 68.37471 * 10 8 7 12 12 O 1.42106 * 110.53877 * 291.62367 * 10 8 7 13 13 O 1.52198 * 104.44768 * 179.97438 * 10 8 7 14 14 C 1.35930 * 114.00073 * 75.00028 * 13 10 8 15 15 C 1.38821 * 120.05975 * 89.99606 * 14 13 10 16 16 Cl 1.73594 * 120.03655 * 0.25394 * 15 14 13 17 17 C 1.38255 * 119.92114 * 179.97438 * 15 14 13 18 18 C 1.38239 * 120.04379 * 359.97438 * 17 15 14 19 19 C 1.50703 * 119.94157 * 180.02562 * 18 17 15 20 20 O 1.42907 * 109.46853 * 65.00246 * 19 18 17 21 21 Si 1.86293 * 109.47368 * 184.99955 * 19 18 17 22 22 C 1.38277 * 120.12259 * 0.04513 * 18 17 15 23 23 C 1.38158 * 120.07364 * 359.95294 * 22 18 17 24 24 C 1.53776 * 113.69063 * 277.53504 * 5 3 2 25 25 H 1.09000 * 109.46962 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46728 * 59.99989 * 1 2 3 27 27 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08996 * 113.61896 * 25.51559 * 7 5 3 29 29 H 1.09000 * 113.68464 * 254.62072 * 7 5 3 30 30 H 1.08002 * 119.97419 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.47394 * 305.00420 * 19 18 17 32 32 H 0.96692 * 114.00165 * 180.02562 * 20 19 18 33 33 H 1.48498 * 110.00109 * 178.68191 * 21 19 18 34 34 H 1.48505 * 110.00111 * 300.00153 * 21 19 18 35 35 H 1.08004 * 119.96529 * 179.97438 * 22 18 17 36 36 H 1.08002 * 120.01699 * 179.97438 * 23 22 18 37 37 H 1.09004 * 113.61146 * 105.46065 * 24 5 3 38 38 H 1.09006 * 113.61932 * 334.56045 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0239 0.6362 -0.7549 7 6 4.1077 2.7143 0.0011 8 6 5.1820 2.2261 0.9873 9 1 6.0820 1.8492 0.5012 10 16 5.5413 3.4092 2.3147 11 8 4.4305 3.5253 3.1931 12 8 6.1869 4.5627 1.7932 13 8 6.6122 2.7257 3.1529 14 6 7.8456 2.7264 2.5816 15 6 8.7244 3.7730 2.8257 16 17 8.2519 5.0796 3.8664 17 6 9.9784 3.7706 2.2436 18 6 10.3570 2.7269 1.4199 19 6 11.7247 2.7263 0.7870 20 8 12.7211 2.6220 1.8062 21 14 11.8709 1.2774 -0.3747 22 6 9.4830 1.6838 1.1752 23 6 8.2287 1.6811 1.7543 24 6 4.1925 1.1231 1.3969 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.4177 3.4402 0.4312 29 1 4.5100 3.0311 -0.9611 30 1 10.6629 4.5841 2.4333 31 1 11.8686 3.6532 0.2318 32 1 13.6279 2.6161 1.4706 33 1 13.2038 1.2835 -1.0293 34 1 11.6767 0.0074 0.3702 35 1 9.7813 0.8699 0.5309 36 1 7.5466 0.8661 1.5623 37 1 4.6631 0.1537 1.5613 38 1 3.5256 1.4141 2.2085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2163008_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:19 Heat of formation + Delta-G solvation = -154.808689 kcal Electronic energy + Delta-G solvation = -28721.535493 eV Core-core repulsion = 24265.528748 eV Total energy + Delta-G solvation = -4456.006745 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.040 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39216 -41.91477 -39.93436 -39.56395 -38.48571 -37.97024 -37.48309 -37.43025 -37.32736 -32.45211 -32.26464 -29.88030 -27.74202 -27.18825 -26.96688 -24.56409 -23.71964 -23.14336 -21.72929 -20.79794 -19.87755 -19.32667 -18.86932 -18.61979 -18.39859 -17.83245 -17.53770 -17.49283 -16.90445 -16.66905 -16.35081 -15.91975 -15.63626 -15.14650 -14.84507 -14.79166 -14.60581 -14.46911 -14.05539 -13.98372 -13.84463 -13.83491 -13.77526 -13.54344 -13.34120 -13.32155 -13.05587 -12.90755 -12.76320 -12.69986 -12.40992 -12.20588 -11.86765 -11.83609 -11.77424 -11.61330 -11.31781 -10.57277 -10.20873 -10.01473 -4.86695 -1.27159 -0.32145 -0.14766 0.68612 0.91352 1.04785 1.31879 1.68549 1.69526 2.01395 2.07263 2.42169 2.55278 2.84598 3.01397 3.19206 3.23127 3.35547 3.57171 3.64554 3.67703 3.89622 3.91614 4.00919 4.23201 4.26649 4.28579 4.30227 4.37876 4.44191 4.47580 4.62603 4.67773 4.69906 4.71426 4.75995 4.83236 4.98265 5.05572 5.32530 5.39333 6.57709 6.62018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.086 4.086 6 H 0.185 0.815 7 C -0.102 4.102 8 C -0.617 4.617 9 H 0.214 0.786 10 S 2.574 3.426 11 O -0.967 6.967 12 O -0.964 6.964 13 O -0.661 6.661 14 C 0.053 3.947 15 C -0.038 4.038 16 Cl -0.063 7.063 17 C -0.079 4.079 18 C -0.046 4.046 19 C -0.099 4.099 20 O -0.558 6.558 21 Si 0.782 3.218 22 C -0.087 4.087 23 C -0.099 4.099 24 C -0.099 4.099 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.399 0.601 33 H -0.292 1.292 34 H -0.279 1.279 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.150 0.850 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -8.648 -9.219 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.305 3.695 4 O -0.432 6.432 5 C -0.106 4.106 6 H 0.202 0.798 7 C -0.140 4.140 8 C -0.728 4.728 9 H 0.231 0.769 10 S 2.675 3.325 11 O -0.965 6.965 12 O -0.962 6.962 13 O -0.620 6.620 14 C 0.010 3.990 15 C -0.067 4.067 16 Cl -0.034 7.034 17 C -0.098 4.098 18 C -0.047 4.047 19 C -0.207 4.207 20 O -0.369 6.369 21 Si 0.685 3.315 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.121 0.879 32 H 0.251 0.749 33 H -0.220 1.220 34 H -0.206 1.206 35 H 0.201 0.799 36 H 0.221 0.779 37 H 0.168 0.832 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.283 -8.422 -8.271 12.557 hybrid contribution 0.335 0.976 1.066 1.484 sum 4.618 -7.446 -7.205 11.344 Atomic orbital electron populations 1.23546 0.75170 1.05724 1.02355 1.86504 1.24594 1.32713 1.83372 1.24275 0.93022 0.81143 0.71079 1.90704 1.68099 1.37750 1.46647 1.22670 0.85404 1.00169 1.02328 0.79766 1.22791 0.93830 0.96215 1.01202 1.32125 1.10059 1.14498 1.16142 0.76914 1.06028 0.73729 0.76416 0.76361 1.93605 1.52998 1.86178 1.63692 1.93649 1.72290 1.48804 1.81445 1.85739 1.28078 1.84986 1.63156 1.18201 0.82129 0.97887 1.00770 1.21437 0.96385 0.90744 0.98155 1.98416 1.92084 1.47788 1.65078 1.21044 0.92785 1.00459 0.95489 1.19754 0.95555 0.93569 0.95869 1.25266 0.85908 1.13260 0.96219 1.86542 1.19429 1.96410 1.34523 0.94121 0.84676 0.73565 0.79156 1.21426 0.92043 0.97942 0.99016 1.21793 0.99086 0.96652 0.94277 1.22845 0.95158 1.00151 0.95597 0.92489 0.91917 0.85057 0.90222 0.84603 0.83124 0.87880 0.74949 1.21958 1.20607 0.79905 0.77858 0.83211 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.13 10.57 -51.40 -0.54 -0.67 16 3 C 0.46 0.97 7.49 71.24 0.53 1.50 16 4 O -0.54 -5.61 15.65 21.95 0.34 -5.27 16 5 C -0.09 0.61 4.26 -11.01 -0.05 0.57 16 6 H 0.19 -2.96 8.14 -2.39 -0.02 -2.98 16 7 C -0.10 0.48 6.99 31.12 0.22 0.69 16 8 C -0.62 4.43 4.03 31.11 0.13 4.55 16 9 H 0.21 -3.75 6.11 -2.38 -0.01 -3.76 16 10 S 2.57 15.03 5.12 -56.49 -0.29 14.74 16 11 O -0.97 -14.33 17.27 -118.57 -2.05 -16.38 16 12 O -0.96 -9.91 15.20 -118.57 -1.80 -11.71 16 13 O -0.66 -3.28 9.51 -61.86 -0.59 -3.87 16 14 C 0.05 0.10 4.79 22.52 0.11 0.21 16 15 C -0.04 -0.22 5.65 22.41 0.13 -0.09 16 16 Cl -0.06 -0.68 27.29 -2.72 -0.07 -0.76 16 17 C -0.08 -0.10 9.46 22.27 0.21 0.11 16 18 C -0.05 0.19 5.38 -19.85 -0.11 0.08 16 19 C -0.10 0.71 2.79 71.24 0.20 0.91 16 20 O -0.56 1.79 12.81 -148.98 -1.91 -0.11 16 21 Si 0.78 -7.97 29.84 68.60 2.05 -5.92 16 22 C -0.09 0.78 8.66 22.26 0.19 0.97 16 23 C -0.10 0.80 8.50 22.36 0.19 1.00 16 24 C -0.10 0.74 7.19 31.11 0.22 0.97 16 25 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 26 H 0.06 -0.09 8.13 -2.38 -0.02 -0.11 16 27 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H 0.08 0.14 7.40 -2.39 -0.02 0.13 16 29 H 0.14 -1.42 8.14 -2.39 -0.02 -1.44 16 30 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 31 H 0.10 -1.10 7.96 -2.39 -0.02 -1.12 16 32 H 0.40 -4.32 8.74 -74.06 -0.65 -4.96 16 33 H -0.29 1.21 7.11 99.48 0.71 1.91 16 34 H -0.28 1.43 7.05 99.48 0.70 2.13 16 35 H 0.18 -2.91 4.86 -2.91 -0.01 -2.93 16 36 H 0.20 -3.76 7.25 -2.91 -0.02 -3.78 16 37 H 0.15 -2.37 8.14 -2.38 -0.02 -2.39 16 38 H 0.09 -0.13 7.38 -2.38 -0.02 -0.15 16 Total: 0.00 -36.68 349.75 -1.18 -37.85 By element: Atomic # 1 Polarization: -21.03 SS G_CDS: 0.52 Total: -20.52 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 3.17 Total: 12.61 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -6.55 Total: -38.01 kcal Atomic # 14 Polarization: -7.97 SS G_CDS: 2.05 Total: -5.92 kcal Atomic # 16 Polarization: 15.03 SS G_CDS: -0.29 Total: 14.74 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.07 Total: -0.76 kcal Total: -36.68 -1.18 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2163008_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.955 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds