Wall clock time and date at job start Mon Mar 8 2021 10:46:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45201 * 109.47437 * 2 1
4 4 C 1.34224 * 117.00218 * 179.97438 * 3 2 1
5 5 O 1.20827 * 119.99809 * 0.02562 * 4 3 2
6 6 C 1.50697 * 120.00070 * 179.97438 * 4 3 2
7 7 H 1.08997 * 112.85677 * 311.20223 * 6 4 3
8 8 C 1.54059 * 113.61566 * 82.51111 * 6 4 3
9 9 C 1.53775 * 86.98518 * 139.97694 * 8 6 4
10 10 F 1.39899 * 113.61592 * 219.97732 * 9 8 6
11 11 C 1.53007 * 113.61460 * 89.15952 * 9 8 6
12 12 S 1.81407 * 109.46867 * 80.86225 * 11 9 8
13 13 O 1.42098 * 110.54250 * 68.37370 * 12 11 9
14 14 O 1.42097 * 110.54120 * 291.62520 * 12 11 9
15 15 O 1.52194 * 104.45000 * 179.97438 * 12 11 9
16 16 C 1.35928 * 113.99850 * 74.99700 * 15 12 11
17 17 C 1.38815 * 120.05618 * 90.00521 * 16 15 12
18 18 Cl 1.73603 * 120.04091 * 359.95013 * 17 16 15
19 19 C 1.38257 * 119.92359 * 179.97438 * 17 16 15
20 20 C 1.38249 * 120.04233 * 0.02562 * 19 17 16
21 21 C 1.50699 * 119.94124 * 179.97438 * 20 19 17
22 22 O 1.42901 * 109.46830 * 300.00361 * 21 20 19
23 23 Si 1.86298 * 109.46950 * 180.02562 * 21 20 19
24 24 C 1.38282 * 120.11862 * 0.24615 * 20 19 17
25 25 C 1.38154 * 120.07381 * 359.47785 * 24 20 19
26 26 C 1.53777 * 113.61316 * 180.02562 * 6 4 3
27 27 H 1.08998 * 109.47569 * 59.99925 * 1 2 3
28 28 H 1.08999 * 109.47335 * 180.02562 * 1 2 3
29 29 H 1.09006 * 109.46631 * 300.00130 * 1 2 3
30 30 H 1.09006 * 109.47124 * 239.99677 * 2 1 3
31 31 H 1.09005 * 109.47186 * 120.00100 * 2 1 3
32 32 H 1.09004 * 113.60963 * 25.47341 * 8 6 4
33 33 H 1.09001 * 113.69572 * 254.49577 * 8 6 4
34 34 H 1.08997 * 109.47020 * 320.86291 * 11 9 8
35 35 H 1.09000 * 109.47273 * 200.85833 * 11 9 8
36 36 H 1.07993 * 119.97884 * 179.97438 * 19 17 16
37 37 H 1.08991 * 109.47351 * 60.00508 * 21 20 19
38 38 H 0.96708 * 114.00246 * 299.99864 * 22 21 20
39 39 H 1.48506 * 109.99834 * 180.02562 * 23 21 20
40 40 H 1.48502 * 110.00011 * 301.31529 * 23 21 20
41 41 H 1.07995 * 119.96014 * 179.74110 * 24 20 19
42 42 H 1.08001 * 120.01793 * 180.23469 * 25 24 20
43 43 H 1.09006 * 113.61515 * 105.47529 * 26 6 4
44 44 H 1.08995 * 113.69675 * 334.58204 * 26 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0141 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5865 0.0005
6 6 3.9208 2.9373 0.0000
7 1 3.4716 3.5810 -0.7563
8 6 3.9860 3.5788 1.3992
9 6 5.3561 4.1428 0.9877
10 9 6.3098 4.1002 2.0103
11 6 5.2763 5.5105 0.3063
12 16 5.1143 6.8053 1.5665
13 8 6.3131 6.9197 2.3208
14 8 3.8497 6.7203 2.2089
15 8 5.0461 8.1018 0.7723
16 6 3.8529 8.3100 0.1553
17 6 2.8393 8.9923 0.8142
18 17 3.0934 9.5798 2.4279
19 6 1.6270 9.2031 0.1839
20 6 1.4241 8.7345 -1.1008
21 6 0.1015 8.9650 -1.7855
22 8 -0.9417 8.3524 -1.0249
23 14 0.1468 8.2174 -3.4913
24 6 2.4306 8.0497 -1.7567
25 6 3.6460 7.8413 -1.1336
26 6 5.4582 2.9679 0.0001
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 4.0385 2.8525 2.2103
33 1 3.2298 4.3461 1.5650
34 1 4.4105 5.5368 -0.3552
35 1 6.1828 5.6804 -0.2747
36 1 0.8376 9.7334 0.6957
37 1 -0.0859 10.0359 -1.8627
38 1 -0.8397 7.3969 -0.9154
39 1 -1.1517 8.4385 -4.1773
40 1 1.2481 8.8231 -4.2823
41 1 2.2679 7.6811 -2.7587
42 1 4.4328 7.3096 -1.6481
43 1 5.8896 3.2426 -0.9626
44 1 5.9141 2.0756 0.4289
There are 69 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 69
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_40_2163008_15494190.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:46:10
Heat of formation + Delta-G solvation = -207.005646 kcal
Electronic energy + Delta-G solvation = -36088.006739 eV
Core-core repulsion = 30849.207350 eV
Total energy + Delta-G solvation = -5238.799388 eV
No. of doubly occupied orbitals = 69
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 409.062 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-49.07708 -42.42482 -41.85191 -39.99602 -39.53736 -38.50629 -37.93290 -37.55517
-37.40463 -37.21491 -32.72306 -32.38826 -32.22761 -31.44599 -27.27631 -27.14729
-26.98929 -24.48114 -23.97836 -23.62610 -22.34243 -21.80535 -20.47244 -19.84026
-19.33520 -18.98558 -18.69155 -18.37182 -17.98533 -17.63674 -17.20878 -16.95567
-16.87711 -16.70254 -16.28393 -16.11191 -16.04333 -15.68694 -15.41330 -15.10025
-14.83486 -14.76394 -14.59412 -14.54174 -14.38842 -14.15907 -13.83001 -13.74094
-13.63445 -13.62400 -13.47758 -13.32527 -13.00645 -12.91232 -12.78414 -12.69905
-12.62685 -12.43872 -12.40923 -12.36436 -12.13970 -11.99937 -11.79359 -11.51628
-11.46764 -11.40146 -10.53741 -10.21780 -9.99746 -4.93867 -1.35662 -0.33109
-0.14400 0.69801 0.92671 1.05396 1.34284 1.60680 1.71484 2.07318
2.11232 2.30842 2.61759 2.76613 2.78906 2.98628 3.19829 3.32158
3.33920 3.36371 3.51953 3.64480 3.75802 3.88950 3.93792 3.99772
4.03001 4.09538 4.12959 4.27814 4.34823 4.37932 4.46291 4.48460
4.50407 4.63197 4.66164 4.72138 4.79920 4.84669 4.89298 4.96688
5.04876 5.06629 5.19797 5.40740 5.47336 6.66330 6.82037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.054 3.946
3 O -0.353 6.353
4 C 0.472 3.528
5 O -0.538 6.538
6 C -0.095 4.095
7 H 0.187 0.813
8 C -0.158 4.158
9 C 0.086 3.914
10 F -0.207 7.207
11 C -0.647 4.647
12 S 2.575 3.425
13 O -0.962 6.962
14 O -0.951 6.951
15 O -0.661 6.661
16 C 0.048 3.952
17 C -0.035 4.035
18 Cl -0.063 7.063
19 C -0.077 4.077
20 C -0.082 4.082
21 C -0.085 4.085
22 O -0.554 6.554
23 Si 0.793 3.207
24 C -0.084 4.084
25 C -0.100 4.100
26 C -0.119 4.119
27 H 0.076 0.924
28 H 0.091 0.909
29 H 0.067 0.933
30 H 0.071 0.929
31 H 0.062 0.938
32 H 0.100 0.900
33 H 0.125 0.875
34 H 0.207 0.793
35 H 0.196 0.804
36 H 0.149 0.851
37 H 0.114 0.886
38 H 0.399 0.601
39 H -0.308 1.308
40 H -0.268 1.268
41 H 0.188 0.812
42 H 0.204 0.796
43 H 0.134 0.866
44 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.309 -3.098 -11.063 12.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.020 4.020
3 O -0.269 6.269
4 C 0.316 3.684
5 O -0.428 6.428
6 C -0.113 4.113
7 H 0.204 0.796
8 C -0.195 4.195
9 C 0.067 3.933
10 F -0.188 7.188
11 C -0.775 4.775
12 S 2.674 3.326
13 O -0.960 6.960
14 O -0.950 6.950
15 O -0.620 6.620
16 C 0.006 3.994
17 C -0.064 4.064
18 Cl -0.034 7.034
19 C -0.096 4.096
20 C -0.083 4.083
21 C -0.193 4.193
22 O -0.362 6.362
23 Si 0.698 3.302
24 C -0.101 4.101
25 C -0.120 4.120
26 C -0.157 4.157
27 H 0.095 0.905
28 H 0.110 0.890
29 H 0.086 0.914
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.118 0.882
33 H 0.143 0.857
34 H 0.224 0.776
35 H 0.213 0.787
36 H 0.166 0.834
37 H 0.132 0.868
38 H 0.250 0.750
39 H -0.236 1.236
40 H -0.194 1.194
41 H 0.205 0.795
42 H 0.221 0.779
43 H 0.152 0.848
44 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -5.196 -2.139 -11.016 12.366
hybrid contribution 0.624 0.259 1.198 1.376
sum -4.572 -1.880 -9.817 10.992
Atomic orbital electron populations
1.21825 0.90616 1.04128 1.04002 1.23256 0.96963 0.79359 1.02409
1.86510 1.23854 1.33319 1.83248 1.23796 0.80736 0.92657 0.71197
1.90703 1.61281 1.44250 1.46560 1.22571 0.96738 0.90854 1.01143
0.79610 1.23990 0.95991 1.02304 0.97228 1.21951 0.88683 0.94850
0.87836 1.92963 1.66895 1.97402 1.61512 1.31183 1.18505 1.08920
1.18900 1.05949 0.74213 0.75718 0.76688 1.93629 1.49658 1.84614
1.68134 1.93663 1.42746 1.84938 1.73603 1.85795 1.41936 1.61194
1.73038 1.18260 0.80373 1.06258 0.94533 1.21443 0.96199 1.00822
0.87894 1.98429 1.96773 1.86559 1.21676 1.21018 0.94170 0.99172
0.95244 1.20761 0.97640 0.96406 0.93539 1.25473 0.84379 1.03020
1.06459 1.86534 1.45726 1.28310 1.75660 0.93822 0.77252 0.88327
0.70829 1.21450 0.90863 0.96503 1.01281 1.21851 1.00258 0.99857
0.90000 1.23626 0.94232 0.96392 1.01463 0.90527 0.88993 0.91412
0.91040 0.91998 0.88188 0.85703 0.77551 0.78689 0.83364 0.86847
0.75002 1.23646 1.19407 0.79531 0.77887 0.84772 0.88495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 1.03 10.29 71.98 0.74 1.77 16
2 C 0.05 -0.14 6.19 71.98 0.45 0.31 16
3 O -0.35 0.61 10.22 -51.35 -0.52 0.09 16
4 C 0.47 -0.42 7.49 71.24 0.53 0.12 16
5 O -0.54 -3.57 15.65 21.96 0.34 -3.23 16
6 C -0.09 0.84 3.91 -10.92 -0.04 0.79 16
7 H 0.19 -3.58 7.64 -2.39 -0.02 -3.59 16
8 C -0.16 0.76 7.11 31.21 0.22 0.98 16
9 C 0.09 -0.33 1.76 -10.25 -0.02 -0.34 16
10 F -0.21 -1.24 16.37 44.97 0.74 -0.51 16
11 C -0.65 6.42 5.04 71.98 0.36 6.78 16
12 S 2.58 8.64 4.89 -56.49 -0.28 8.36 16
13 O -0.96 -13.52 17.56 -118.57 -2.08 -15.61 16
14 O -0.95 -5.93 14.41 -118.57 -1.71 -7.64 16
15 O -0.66 -1.32 9.51 -61.84 -0.59 -1.91 16
16 C 0.05 -0.10 4.79 22.52 0.11 0.01 16
17 C -0.03 -0.07 5.66 22.41 0.13 0.06 16
18 Cl -0.06 -0.52 27.26 -2.72 -0.07 -0.59 16
19 C -0.08 0.21 9.39 22.28 0.21 0.41 16
20 C -0.08 0.71 5.39 -19.85 -0.11 0.60 16
21 C -0.08 0.76 2.82 71.24 0.20 0.96 16
22 O -0.55 3.77 12.77 -148.98 -1.90 1.87 16
23 Si 0.79 -9.34 29.78 68.60 2.04 -7.29 16
24 C -0.08 1.18 8.66 22.26 0.19 1.37 16
25 C -0.10 1.25 8.46 22.36 0.19 1.44 16
26 C -0.12 0.83 6.89 31.13 0.21 1.05 16
27 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16
28 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16
29 H 0.07 -0.43 8.14 -2.38 -0.02 -0.45 16
30 H 0.07 -0.18 8.13 -2.38 -0.02 -0.20 16
31 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16
32 H 0.10 -0.18 8.10 -2.38 -0.02 -0.20 16
33 H 0.12 -0.91 7.32 -2.39 -0.02 -0.93 16
34 H 0.21 -4.29 5.79 -2.39 -0.01 -4.31 16
35 H 0.20 -3.20 8.14 -2.39 -0.02 -3.22 16
36 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16
37 H 0.11 -0.82 7.96 -2.39 -0.02 -0.84 16
38 H 0.40 -6.17 8.70 -74.05 -0.64 -6.82 16
39 H -0.31 0.53 7.11 99.48 0.71 1.24 16
40 H -0.27 2.40 7.11 99.48 0.71 3.11 16
41 H 0.19 -3.99 4.87 -2.91 -0.01 -4.01 16
42 H 0.20 -4.57 7.49 -2.91 -0.02 -4.60 16
43 H 0.13 -1.86 8.10 -2.38 -0.02 -1.88 16
44 H 0.10 -0.14 7.44 -2.39 -0.02 -0.16 16
Total: 0.00 -38.71 396.82 -0.19 -38.90
By element:
Atomic # 1 Polarization: -29.23 SS G_CDS: 0.47 Total: -28.76 kcal
Atomic # 6 Polarization: 12.94 SS G_CDS: 3.38 Total: 16.32 kcal
Atomic # 8 Polarization: -19.96 SS G_CDS: -6.46 Total: -26.43 kcal
Atomic # 9 Polarization: -1.24 SS G_CDS: 0.74 Total: -0.51 kcal
Atomic # 14 Polarization: -9.34 SS G_CDS: 2.04 Total: -7.29 kcal
Atomic # 16 Polarization: 8.64 SS G_CDS: -0.28 Total: 8.36 kcal
Atomic # 17 Polarization: -0.52 SS G_CDS: -0.07 Total: -0.59 kcal
Total: -38.71 -0.19 -38.90 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_40_2163008_15494190.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -168.110 kcal
(2) G-P(sol) polarization free energy of solvation -38.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) -207.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds