Wall clock time and date at job start Mon Mar 8 2021 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46835 * 2 1 4 4 C 1.50706 * 109.47113 * 119.99490 * 2 1 3 5 5 C 1.38239 * 119.94455 * 244.98206 * 4 2 1 6 6 C 1.38254 * 120.04397 * 179.70125 * 5 4 2 7 7 Cl 1.73599 * 120.04254 * 180.31967 * 6 5 4 8 8 C 1.38813 * 119.92249 * 0.59275 * 6 5 4 9 9 O 1.35921 * 120.06056 * 179.69648 * 8 6 5 10 10 S 1.52201 * 114.00483 * 269.72877 * 9 8 6 11 11 O 1.42095 * 104.27562 * 318.93377 * 10 9 8 12 12 O 1.42097 * 104.27909 * 191.07010 * 10 9 8 13 13 C 1.81403 * 104.44463 * 75.00178 * 10 9 8 14 14 H 1.08993 * 112.85040 * 53.80748 * 13 10 9 15 15 C 1.53783 * 113.60978 * 184.99989 * 13 10 9 16 16 C 1.53786 * 87.08050 * 89.20207 * 15 13 10 17 17 H 1.09002 * 113.61357 * 270.88070 * 16 15 13 18 18 C 1.50697 * 113.61519 * 140.06465 * 16 15 13 19 19 C 1.38241 * 119.99978 * 301.25307 * 18 16 15 20 20 C 1.38229 * 120.00021 * 179.79218 * 19 18 16 21 21 C 1.38242 * 120.00096 * 0.43642 * 20 19 18 22 22 C 1.38231 * 119.99662 * 359.81979 * 21 20 19 23 23 C 1.38234 * 120.00267 * 121.52963 * 18 16 15 24 24 C 1.53781 * 87.17350 * 25.47154 * 16 15 13 25 25 C 1.38711 * 119.88024 * 359.43278 * 8 6 5 26 26 C 1.38149 * 119.95627 * 0.27054 * 25 8 6 27 27 H 0.96703 * 114.00262 * 299.99754 * 1 2 3 28 28 H 1.08996 * 109.47635 * 239.99535 * 2 1 3 29 29 H 1.48506 * 110.00189 * 178.67646 * 3 2 1 30 30 H 1.48493 * 110.00055 * 299.99629 * 3 2 1 31 31 H 1.08005 * 119.97984 * 0.02562 * 5 4 2 32 32 H 1.08992 * 113.61796 * 334.65065 * 15 13 10 33 33 H 1.09000 * 113.61157 * 203.74485 * 15 13 10 34 34 H 1.08001 * 119.99612 * 0.02562 * 19 18 16 35 35 H 1.08000 * 120.00013 * 180.27643 * 20 19 18 36 36 H 1.07993 * 119.99920 * 179.83589 * 21 20 19 37 37 H 1.08002 * 119.99751 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.99951 * 359.97438 * 23 18 16 39 39 H 1.08999 * 113.61567 * 89.07405 * 24 16 15 40 40 H 1.08998 * 113.61196 * 219.97759 * 24 16 15 41 41 H 1.07999 * 120.02369 * 180.29269 * 25 8 6 42 42 H 1.07998 * 119.96463 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6389 -0.0111 2.1904 6 6 3.0954 -0.6593 3.3231 7 17 3.9768 0.2207 4.5323 8 6 2.8530 -2.0159 3.4895 9 8 3.3058 -2.6573 4.5990 10 16 4.7002 -3.2483 4.4469 11 8 4.7055 -3.8011 3.1378 12 8 4.8573 -4.0749 5.5919 13 6 5.8108 -1.8169 4.5379 14 1 5.6521 -1.2142 5.4321 15 6 7.2869 -2.1655 4.2838 16 6 7.0070 -1.9181 2.7920 17 1 6.6665 -2.8056 2.2586 18 6 8.1236 -1.1995 2.0794 19 6 8.5286 0.0495 2.5118 20 6 9.5557 0.7067 1.8608 21 6 10.1718 0.1190 0.7717 22 6 9.7632 -1.1276 0.3361 23 6 8.7390 -1.7868 0.9898 24 6 5.8639 -0.9912 3.2384 25 6 2.1431 -2.7146 2.5242 26 6 1.6840 -2.0606 1.3973 27 1 -0.3934 0.4417 0.7651 28 1 1.7924 -0.5139 -0.8899 29 1 3.5345 1.7704 0.0322 30 1 1.5614 2.4678 -1.2085 31 1 2.8308 1.0435 2.0580 32 1 7.5371 -3.2007 4.5153 33 1 7.9854 -1.4521 4.7211 34 1 8.0451 0.5101 3.3606 35 1 9.8752 1.6806 2.2013 36 1 10.9725 0.6337 0.2615 37 1 10.2448 -1.5870 -0.5145 38 1 8.4198 -2.7608 0.6495 39 1 6.1741 0.0426 3.3904 40 1 4.9663 -1.0792 2.6264 41 1 1.9491 -3.7691 2.6536 42 1 1.1309 -2.6044 0.6458 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2163008_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:46:03 Heat of formation + Delta-G solvation = -30.842132 kcal Electronic energy + Delta-G solvation = -31699.306282 eV Core-core repulsion = 27345.823474 eV Total energy + Delta-G solvation = -4353.482808 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.057 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.58155 -41.21535 -40.14276 -39.06442 -38.31961 -38.12168 -37.45678 -37.24064 -32.70411 -32.39632 -32.17412 -31.82785 -27.35107 -27.24160 -27.01068 -24.66053 -23.88566 -23.70751 -23.01007 -21.78009 -21.05341 -19.71762 -19.05809 -18.61942 -18.37149 -18.17918 -17.52333 -17.05852 -16.77900 -16.45824 -16.26265 -16.23399 -15.80359 -15.60484 -15.32551 -15.24866 -14.84150 -14.67551 -14.47551 -14.33827 -14.27132 -13.96985 -13.88658 -13.63439 -13.50758 -13.35975 -13.27350 -13.21476 -12.97413 -12.66461 -12.52203 -12.44306 -12.15984 -12.11649 -11.96532 -11.81852 -11.48017 -11.38209 -10.74566 -10.42468 -10.08689 -9.86227 -9.62710 -5.24455 -1.24526 -0.43112 -0.33187 0.36606 0.45855 0.48378 0.85972 1.02625 1.43752 1.79940 1.92509 2.36800 2.57079 2.77088 2.98457 3.05020 3.08596 3.19967 3.30636 3.46549 3.58854 3.63306 3.66825 3.78268 3.91762 4.04485 4.06646 4.10319 4.19330 4.21970 4.30726 4.35631 4.37304 4.39763 4.48545 4.52727 4.55614 4.59039 4.72304 4.77197 4.91134 5.01016 5.05060 5.12288 5.21024 5.52683 5.59626 5.66886 6.05183 6.31975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.069 4.069 3 Si 0.678 3.322 4 C -0.089 4.089 5 C -0.096 4.096 6 C -0.039 4.039 7 Cl -0.034 7.034 8 C 0.080 3.920 9 O -0.655 6.655 10 S 2.607 3.393 11 O -0.941 6.941 12 O -0.917 6.917 13 C -0.655 4.655 14 H 0.152 0.848 15 C -0.085 4.085 16 C -0.095 4.095 17 H 0.120 0.880 18 C -0.069 4.069 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.094 4.094 25 C -0.072 4.072 26 C -0.069 4.069 27 H 0.382 0.618 28 H 0.125 0.875 29 H -0.250 1.250 30 H -0.247 1.247 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 4.886 -1.595 5.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.180 4.180 3 Si 0.579 3.421 4 C -0.090 4.090 5 C -0.114 4.114 6 C -0.068 4.068 7 Cl -0.005 7.005 8 C 0.037 3.963 9 O -0.613 6.613 10 S 2.701 3.299 11 O -0.940 6.940 12 O -0.915 6.915 13 C -0.762 4.762 14 H 0.170 0.830 15 C -0.123 4.123 16 C -0.113 4.113 17 H 0.138 0.862 18 C -0.069 4.069 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.092 4.092 26 C -0.087 4.087 27 H 0.230 0.770 28 H 0.142 0.858 29 H -0.174 1.174 30 H -0.171 1.171 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.551 4.563 -2.297 5.138 hybrid contribution 0.631 -0.010 0.464 0.783 sum 0.079 4.553 -1.833 4.909 Atomic orbital electron populations 1.86556 1.16317 1.81636 1.49362 1.25107 0.85764 1.10290 0.96796 0.94924 0.81595 0.77500 0.88092 1.20587 0.97043 0.94866 0.96509 1.20855 0.98370 1.00505 0.91665 1.20964 1.01193 0.90921 0.93748 1.98425 1.72417 1.75348 1.54320 1.17743 1.03998 0.89246 0.85286 1.85751 1.54197 1.75156 1.46196 1.05201 0.74146 0.75792 0.74745 1.93646 1.83989 1.75968 1.40378 1.93670 1.83634 1.62797 1.51427 1.32838 1.13841 1.20374 1.09107 0.83026 1.22635 0.90854 1.03358 0.95465 1.22002 0.94378 0.99860 0.95084 0.86226 1.19521 0.96699 0.94714 0.96016 1.20998 0.97589 0.94771 1.00214 1.21162 0.96313 1.00000 0.96084 1.21213 1.00033 0.95723 0.97048 1.21200 0.97131 0.95265 0.99900 1.21127 0.96419 1.00099 0.95476 1.23259 0.99442 0.99698 0.90749 1.21421 0.94455 1.01584 0.91775 1.21139 0.97306 0.93465 0.96794 0.77019 0.85809 1.17402 1.17125 0.82997 0.90041 0.87333 0.86086 0.85987 0.86024 0.85898 0.85809 0.87202 0.90034 0.82707 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.29 12.83 -35.23 -0.45 0.84 16 2 C -0.07 0.20 2.80 36.01 0.10 0.30 16 3 Si 0.68 -2.11 29.80 -169.99 -5.07 -7.17 16 4 C -0.09 0.22 5.35 -104.60 -0.56 -0.34 16 5 C -0.10 0.24 8.29 -39.58 -0.33 -0.09 16 6 C -0.04 0.04 3.66 -39.36 -0.14 -0.11 16 7 Cl -0.03 0.05 22.03 -51.86 -1.14 -1.10 16 8 C 0.08 0.05 4.33 -39.19 -0.17 -0.12 16 9 O -0.65 -1.26 9.58 -51.82 -0.50 -1.76 16 10 S 2.61 6.02 5.08 -107.50 -0.55 5.48 16 11 O -0.94 -2.94 14.53 -67.04 -0.97 -3.92 16 12 O -0.92 -5.33 18.09 -67.04 -1.21 -6.54 16 13 C -0.65 0.32 3.13 -25.77 -0.08 0.24 16 14 H 0.15 -0.29 6.79 -51.93 -0.35 -0.64 16 15 C -0.08 0.07 7.15 -25.92 -0.19 -0.12 16 16 C -0.09 0.01 3.58 -90.96 -0.33 -0.31 16 17 H 0.12 0.03 6.84 -51.93 -0.35 -0.32 16 18 C -0.07 -0.04 5.29 -104.62 -0.55 -0.59 16 19 C -0.12 -0.01 8.55 -39.58 -0.34 -0.35 16 20 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 21 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 22 C -0.12 -0.07 10.05 -39.59 -0.40 -0.47 16 23 C -0.11 -0.10 9.71 -39.58 -0.38 -0.48 16 24 C -0.09 0.09 4.13 -25.78 -0.11 -0.02 16 25 C -0.07 0.03 9.05 -39.44 -0.36 -0.32 16 26 C -0.07 0.13 9.68 -39.60 -0.38 -0.25 16 27 H 0.38 -2.38 8.70 45.56 0.40 -1.98 16 28 H 0.12 -0.35 7.96 -51.93 -0.41 -0.76 16 29 H -0.25 0.23 7.11 56.52 0.40 0.63 16 30 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 31 H 0.15 -0.70 4.90 -52.48 -0.26 -0.95 16 32 H 0.08 -0.10 8.10 -51.93 -0.42 -0.52 16 33 H 0.11 -0.21 7.66 -51.93 -0.40 -0.61 16 34 H 0.12 -0.19 6.72 -52.49 -0.35 -0.55 16 35 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 36 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 37 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 38 H 0.12 -0.04 8.05 -52.49 -0.42 -0.46 16 39 H 0.11 -0.23 5.73 -51.93 -0.30 -0.53 16 40 H 0.08 -0.08 4.58 -51.93 -0.24 -0.32 16 41 H 0.16 -0.23 8.06 -52.49 -0.42 -0.65 16 42 H 0.15 -0.51 8.06 -52.49 -0.42 -0.94 16 LS Contribution 357.31 15.07 5.38 5.38 Total: 0.00 -8.74 357.31 -13.94 -22.68 By element: Atomic # 1 Polarization: -5.57 SS G_CDS: -4.42 Total: -9.99 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -5.01 Total: -3.90 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -3.14 Total: -11.38 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: -5.07 Total: -7.17 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -0.55 Total: 5.48 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.14 Total: -1.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -8.74 -13.94 -22.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2163008_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.166 kcal (2) G-P(sol) polarization free energy of solvation -8.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds