Wall clock time and date at job start Mon Mar 8 2021 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46835 * 2 1 4 4 C 1.50706 * 109.47113 * 119.99490 * 2 1 3 5 5 C 1.38239 * 119.94455 * 244.98206 * 4 2 1 6 6 C 1.38254 * 120.04397 * 179.70125 * 5 4 2 7 7 Cl 1.73599 * 120.04254 * 180.31967 * 6 5 4 8 8 C 1.38813 * 119.92249 * 0.59275 * 6 5 4 9 9 O 1.35921 * 120.06056 * 179.69648 * 8 6 5 10 10 S 1.52201 * 114.00483 * 269.72877 * 9 8 6 11 11 O 1.42095 * 104.27562 * 318.93377 * 10 9 8 12 12 O 1.42097 * 104.27909 * 191.07010 * 10 9 8 13 13 C 1.81403 * 104.44463 * 75.00178 * 10 9 8 14 14 H 1.08993 * 112.85040 * 53.80748 * 13 10 9 15 15 C 1.53783 * 113.60978 * 184.99989 * 13 10 9 16 16 C 1.53786 * 87.08050 * 89.20207 * 15 13 10 17 17 H 1.09002 * 113.61357 * 270.88070 * 16 15 13 18 18 C 1.50697 * 113.61519 * 140.06465 * 16 15 13 19 19 C 1.38241 * 119.99978 * 301.25307 * 18 16 15 20 20 C 1.38229 * 120.00021 * 179.79218 * 19 18 16 21 21 C 1.38242 * 120.00096 * 0.43642 * 20 19 18 22 22 C 1.38231 * 119.99662 * 359.81979 * 21 20 19 23 23 C 1.38234 * 120.00267 * 121.52963 * 18 16 15 24 24 C 1.53781 * 87.17350 * 25.47154 * 16 15 13 25 25 C 1.38711 * 119.88024 * 359.43278 * 8 6 5 26 26 C 1.38149 * 119.95627 * 0.27054 * 25 8 6 27 27 H 0.96703 * 114.00262 * 299.99754 * 1 2 3 28 28 H 1.08996 * 109.47635 * 239.99535 * 2 1 3 29 29 H 1.48506 * 110.00189 * 178.67646 * 3 2 1 30 30 H 1.48493 * 110.00055 * 299.99629 * 3 2 1 31 31 H 1.08005 * 119.97984 * 0.02562 * 5 4 2 32 32 H 1.08992 * 113.61796 * 334.65065 * 15 13 10 33 33 H 1.09000 * 113.61157 * 203.74485 * 15 13 10 34 34 H 1.08001 * 119.99612 * 0.02562 * 19 18 16 35 35 H 1.08000 * 120.00013 * 180.27643 * 20 19 18 36 36 H 1.07993 * 119.99920 * 179.83589 * 21 20 19 37 37 H 1.08002 * 119.99751 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.99951 * 359.97438 * 23 18 16 39 39 H 1.08999 * 113.61567 * 89.07405 * 24 16 15 40 40 H 1.08998 * 113.61196 * 219.97759 * 24 16 15 41 41 H 1.07999 * 120.02369 * 180.29269 * 25 8 6 42 42 H 1.07998 * 119.96463 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6389 -0.0111 2.1904 6 6 3.0954 -0.6593 3.3231 7 17 3.9768 0.2207 4.5323 8 6 2.8530 -2.0159 3.4895 9 8 3.3058 -2.6573 4.5990 10 16 4.7002 -3.2483 4.4469 11 8 4.7055 -3.8011 3.1378 12 8 4.8573 -4.0749 5.5919 13 6 5.8108 -1.8169 4.5379 14 1 5.6521 -1.2142 5.4321 15 6 7.2869 -2.1655 4.2838 16 6 7.0070 -1.9181 2.7920 17 1 6.6665 -2.8056 2.2586 18 6 8.1236 -1.1995 2.0794 19 6 8.5286 0.0495 2.5118 20 6 9.5557 0.7067 1.8608 21 6 10.1718 0.1190 0.7717 22 6 9.7632 -1.1276 0.3361 23 6 8.7390 -1.7868 0.9898 24 6 5.8639 -0.9912 3.2384 25 6 2.1431 -2.7146 2.5242 26 6 1.6840 -2.0606 1.3973 27 1 -0.3934 0.4417 0.7651 28 1 1.7924 -0.5139 -0.8899 29 1 3.5345 1.7704 0.0322 30 1 1.5614 2.4678 -1.2085 31 1 2.8308 1.0435 2.0580 32 1 7.5371 -3.2007 4.5153 33 1 7.9854 -1.4521 4.7211 34 1 8.0451 0.5101 3.3606 35 1 9.8752 1.6806 2.2013 36 1 10.9725 0.6337 0.2615 37 1 10.2448 -1.5870 -0.5145 38 1 8.4198 -2.7608 0.6495 39 1 6.1741 0.0426 3.3904 40 1 4.9663 -1.0792 2.6264 41 1 1.9491 -3.7691 2.6536 42 1 1.1309 -2.6044 0.6458 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2163008_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:46:01 Heat of formation + Delta-G solvation = -27.986201 kcal Electronic energy + Delta-G solvation = -31699.182440 eV Core-core repulsion = 27345.823474 eV Total energy + Delta-G solvation = -4353.358966 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.057 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.56794 -41.18451 -40.05581 -39.04690 -38.48711 -38.03594 -37.45779 -37.28547 -32.57658 -32.33592 -32.07960 -31.79041 -27.29437 -27.10736 -26.98845 -24.53880 -23.85580 -23.64156 -22.98717 -21.76977 -21.04159 -19.76771 -19.05039 -18.60275 -18.33782 -18.12492 -17.47552 -16.94877 -16.74470 -16.44749 -16.22625 -16.04980 -15.75001 -15.48132 -15.28926 -15.20718 -14.79694 -14.64080 -14.50441 -14.30497 -14.23365 -13.87804 -13.78941 -13.69036 -13.61681 -13.46611 -13.40814 -13.27291 -12.85377 -12.59590 -12.40485 -12.35008 -12.06813 -12.03976 -11.88786 -11.76195 -11.45846 -11.34722 -10.55021 -10.29945 -9.97822 -9.84325 -9.60550 -5.02247 -1.31568 -0.37288 -0.20135 0.38518 0.47629 0.57723 0.80965 1.24278 1.62335 1.98074 2.05451 2.27894 2.51218 2.78736 3.01058 3.11824 3.18726 3.31706 3.52302 3.56029 3.64008 3.68077 3.85320 3.93811 3.97741 4.10041 4.13283 4.22624 4.27425 4.35255 4.41552 4.43674 4.46932 4.53449 4.58745 4.60687 4.61788 4.67351 4.77320 4.89428 5.06168 5.06703 5.10608 5.16332 5.34375 5.55695 5.62165 5.69025 6.09380 6.75319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.068 4.068 3 Si 0.755 3.245 4 C -0.081 4.081 5 C -0.091 4.091 6 C -0.042 4.042 7 Cl -0.031 7.031 8 C 0.055 3.945 9 O -0.661 6.661 10 S 2.606 3.394 11 O -0.958 6.958 12 O -0.963 6.963 13 C -0.640 4.640 14 H 0.169 0.831 15 C -0.088 4.088 16 C -0.099 4.099 17 H 0.110 0.890 18 C -0.076 4.076 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.091 4.091 25 C -0.085 4.085 26 C -0.068 4.068 27 H 0.399 0.601 28 H 0.125 0.875 29 H -0.274 1.274 30 H -0.296 1.296 31 H 0.175 0.825 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.156 0.844 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 6.550 -1.659 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.179 4.179 3 Si 0.661 3.339 4 C -0.083 4.083 5 C -0.109 4.109 6 C -0.071 4.071 7 Cl -0.001 7.001 8 C 0.013 3.987 9 O -0.620 6.620 10 S 2.704 3.296 11 O -0.957 6.957 12 O -0.961 6.961 13 C -0.750 4.750 14 H 0.187 0.813 15 C -0.126 4.126 16 C -0.117 4.117 17 H 0.128 0.872 18 C -0.076 4.076 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.086 4.086 27 H 0.249 0.751 28 H 0.142 0.858 29 H -0.200 1.200 30 H -0.223 1.223 31 H 0.191 0.809 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.174 0.826 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.563 6.187 -2.333 6.636 hybrid contribution 0.600 -0.454 0.379 0.842 sum 0.037 5.733 -1.954 6.057 Atomic orbital electron populations 1.86529 1.16327 1.82053 1.50643 1.25158 0.85833 1.10373 0.96508 0.94061 0.78759 0.75299 0.85827 1.20675 0.96462 0.94649 0.96505 1.21096 0.97522 1.01456 0.90857 1.21024 1.01401 0.90432 0.94245 1.98419 1.72367 1.75041 1.54313 1.18049 1.05210 0.90022 0.85431 1.85716 1.54000 1.75433 1.46821 1.05054 0.74483 0.76445 0.73632 1.93610 1.84365 1.77082 1.40598 1.93608 1.84556 1.65172 1.52776 1.32625 1.13155 1.18826 1.10355 0.81320 1.22777 0.90729 1.04020 0.95062 1.21996 0.94637 0.99776 0.95339 0.87205 1.19630 0.96823 0.95094 0.96012 1.21229 0.97606 0.94529 1.00687 1.21443 0.96253 1.00722 0.95955 1.21467 1.00519 0.95809 0.97424 1.21410 0.97275 0.95633 1.00367 1.21320 0.96946 1.00569 0.96065 1.23370 0.99220 1.00271 0.90053 1.21589 0.94791 1.01951 0.92233 1.21314 0.96990 0.93831 0.96446 0.75087 0.85805 1.20031 1.22308 0.80863 0.89990 0.85610 0.84296 0.84400 0.84824 0.84966 0.85548 0.85457 0.89904 0.82627 0.81720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.28 12.83 -148.98 -1.91 1.37 16 2 C -0.07 0.47 2.80 71.24 0.20 0.67 16 3 Si 0.76 -5.28 29.80 68.60 2.04 -3.24 16 4 C -0.08 0.48 5.35 -19.85 -0.11 0.37 16 5 C -0.09 0.56 8.29 22.27 0.18 0.74 16 6 C -0.04 0.10 3.66 22.41 0.08 0.18 16 7 Cl -0.03 0.11 22.03 -2.72 -0.06 0.05 16 8 C 0.06 0.09 4.33 22.52 0.10 0.19 16 9 O -0.66 -3.36 9.58 -61.76 -0.59 -3.95 16 10 S 2.61 15.71 5.08 -56.49 -0.29 15.43 16 11 O -0.96 -7.65 14.53 -118.57 -1.72 -9.38 16 12 O -0.96 -13.26 18.09 -118.57 -2.15 -15.41 16 13 C -0.64 0.69 3.13 31.21 0.10 0.79 16 14 H 0.17 -0.77 6.79 -2.39 -0.02 -0.79 16 15 C -0.09 0.16 7.15 31.12 0.22 0.39 16 16 C -0.10 0.02 3.58 -11.01 -0.04 -0.02 16 17 H 0.11 0.19 6.84 -2.39 -0.02 0.17 16 18 C -0.08 -0.07 5.29 -19.87 -0.11 -0.18 16 19 C -0.12 0.11 8.55 22.27 0.19 0.30 16 20 C -0.13 0.07 10.05 22.27 0.22 0.29 16 21 C -0.13 -0.07 10.05 22.27 0.22 0.16 16 22 C -0.13 -0.19 10.05 22.27 0.22 0.04 16 23 C -0.13 -0.29 9.71 22.27 0.22 -0.07 16 24 C -0.09 0.23 4.13 31.21 0.13 0.36 16 25 C -0.09 0.02 9.05 22.36 0.20 0.23 16 26 C -0.07 0.28 9.68 22.26 0.22 0.50 16 27 H 0.40 -5.54 8.70 -74.06 -0.64 -6.19 16 28 H 0.12 -0.81 7.96 -2.39 -0.02 -0.83 16 29 H -0.27 0.75 7.11 99.48 0.71 1.46 16 30 H -0.30 -0.39 7.11 99.48 0.71 0.32 16 31 H 0.17 -1.92 4.90 -2.91 -0.01 -1.93 16 32 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 33 H 0.13 -0.65 7.66 -2.39 -0.02 -0.67 16 34 H 0.14 -0.73 6.72 -2.91 -0.02 -0.75 16 35 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 36 H 0.13 -0.37 8.06 -2.91 -0.02 -0.40 16 37 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 38 H 0.13 0.07 8.05 -2.91 -0.02 0.04 16 39 H 0.13 -0.77 5.73 -2.39 -0.01 -0.78 16 40 H 0.08 -0.20 4.58 -2.39 -0.01 -0.21 16 41 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.17 -1.20 8.06 -2.91 -0.02 -1.22 16 Total: 0.00 -21.30 357.31 -1.94 -23.24 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: 0.48 Total: -13.04 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 2.26 Total: 4.93 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -6.37 Total: -27.37 kcal Atomic # 14 Polarization: -5.28 SS G_CDS: 2.04 Total: -3.24 kcal Atomic # 16 Polarization: 15.71 SS G_CDS: -0.29 Total: 15.43 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.06 Total: 0.05 kcal Total: -21.30 -1.94 -23.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2163008_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -21.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds