Wall clock time and date at job start Mon Mar 8 2021 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00266 * 2 1 4 4 C 1.50698 * 109.47041 * 124.11238 * 3 2 1 5 5 C 1.38240 * 120.00280 * 265.07197 * 4 3 2 6 6 C 1.38252 * 120.14516 * 180.27772 * 5 4 3 7 7 C 1.50696 * 119.92685 * 179.72492 * 6 5 4 8 8 O 1.42900 * 109.47265 * 64.72677 * 7 6 5 9 9 Si 1.86308 * 109.47107 * 184.72757 * 7 6 5 10 10 C 1.38246 * 120.14649 * 359.44976 * 6 5 4 11 11 C 1.38561 * 120.00040 * 0.27602 * 10 6 5 12 12 O 1.35993 * 120.07507 * 179.97438 * 11 10 6 13 13 C 1.42899 * 116.99953 * 0.02562 * 12 11 10 14 14 C 1.38573 * 119.99622 * 84.80072 * 4 3 2 15 15 O 1.35992 * 120.07501 * 0.02562 * 14 4 3 16 16 S 1.52199 * 113.99979 * 89.22296 * 15 14 4 17 17 O 1.42104 * 104.27721 * 192.74406 * 16 15 14 18 18 O 1.42103 * 104.28027 * 320.59865 * 16 15 14 19 19 C 1.81400 * 104.45045 * 76.67286 * 16 15 14 20 20 C 1.53002 * 109.47050 * 182.08870 * 19 16 15 21 21 H 1.08999 * 112.85473 * 43.17683 * 20 19 16 22 22 C 1.53777 * 113.61524 * 174.38099 * 20 19 16 23 23 C 1.53780 * 87.08228 * 89.10808 * 22 20 19 24 24 O 1.42893 * 113.61845 * 270.80026 * 23 22 20 25 25 C 1.42908 * 114.00237 * 304.70400 * 24 23 22 26 26 C 1.53004 * 113.61210 * 139.97907 * 23 22 20 27 27 F 1.39905 * 109.46964 * 63.10950 * 26 23 22 28 28 F 1.39900 * 109.47042 * 183.10536 * 26 23 22 29 29 F 1.39902 * 109.47459 * 303.11259 * 26 23 22 30 30 C 1.53779 * 87.08100 * 25.43588 * 23 22 20 31 31 H 1.08000 * 120.00057 * 354.96635 * 1 2 3 32 32 H 1.08004 * 120.00205 * 174.97220 * 1 2 3 33 33 H 1.08004 * 119.99643 * 180.02562 * 2 1 3 34 34 H 1.09005 * 109.46775 * 4.11340 * 3 2 1 35 35 H 1.08994 * 109.47361 * 244.11586 * 3 2 1 36 36 H 1.07996 * 119.93141 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.47332 * 304.72356 * 7 6 5 38 38 H 0.96699 * 114.00222 * 59.99997 * 8 7 6 39 39 H 1.48496 * 110.00255 * 58.68046 * 9 7 6 40 40 H 1.48505 * 109.99959 * 180.02562 * 9 7 6 41 41 H 1.08007 * 119.99957 * 180.25048 * 10 6 5 42 42 H 1.09002 * 109.47219 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.46678 * 299.99845 * 13 12 11 44 44 H 1.08995 * 109.47469 * 59.99860 * 13 12 11 45 45 H 1.08999 * 109.46768 * 302.08533 * 19 16 15 46 46 H 1.08991 * 109.46901 * 62.08334 * 19 16 15 47 47 H 1.08989 * 113.61618 * 203.66370 * 22 20 19 48 48 H 1.09002 * 113.60991 * 334.56709 * 22 20 19 49 49 H 1.08996 * 109.46719 * 65.10918 * 25 24 23 50 50 H 1.08998 * 109.46925 * 185.10981 * 25 24 23 51 51 H 1.09001 * 109.46625 * 305.11486 * 25 24 23 52 52 H 1.09002 * 113.61582 * 220.01563 * 30 23 22 53 53 H 1.09001 * 113.61873 * 89.11385 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0047 1.3416 1.1763 5 6 2.6131 1.9458 2.3565 6 6 3.4764 1.9861 3.4356 7 6 3.0467 2.6514 4.7176 8 8 1.9525 1.9289 5.2858 9 14 4.4716 2.6654 5.9179 10 6 4.7308 1.4124 3.3430 11 6 5.1274 0.8002 2.1650 12 8 6.3613 0.2359 2.0721 13 6 7.1973 0.3101 3.2286 14 6 4.2607 0.7647 1.0769 15 8 4.6456 0.1656 -0.0817 16 16 5.3233 1.1050 -1.0690 17 8 5.3593 0.3695 -2.2844 18 8 4.5839 2.3142 -0.9662 19 6 6.9982 1.3248 -0.4081 20 6 7.7724 2.3018 -1.2953 21 1 7.1795 3.1680 -1.5889 22 6 9.1622 2.6641 -0.7459 23 6 9.6991 1.4501 -1.5223 24 8 9.6683 0.2329 -0.7745 25 6 10.3534 0.3026 0.4778 26 6 11.0509 1.7010 -2.1936 27 9 12.0170 1.9580 -1.2149 28 9 11.4225 0.5712 -2.9303 29 9 10.9494 2.8031 -3.0494 30 6 8.4997 1.6243 -2.4688 31 1 -0.5400 0.9317 0.0821 32 1 -0.5401 -0.9317 -0.0820 33 1 1.8499 -0.9354 -0.0004 34 1 1.3575 2.1323 0.0737 35 1 2.6337 1.3954 -0.9245 36 1 1.6326 2.3916 2.4341 37 1 2.7370 3.6755 4.5095 38 1 2.1567 1.0076 5.4969 39 1 5.6271 3.3864 5.3262 40 1 4.0605 3.3184 7.1867 41 1 5.4017 1.4416 4.1889 42 1 8.1502 -0.1764 3.0199 43 1 7.3718 1.3553 3.4842 44 1 6.7081 -0.1913 4.0635 45 1 6.9397 1.7223 0.6051 46 1 7.5115 0.3634 -0.3921 47 1 9.5410 3.6185 -1.1113 48 1 9.2443 2.5612 0.3362 49 1 9.8424 1.0083 1.1326 50 1 10.3622 -0.6834 0.9424 51 1 11.3780 0.6361 0.3132 52 1 8.0468 0.6822 -2.7779 53 1 8.6973 2.2945 -3.3054 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2307266_17541816.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:02:21 Heat of formation + Delta-G solvation = -270.973643 kcal Electronic energy + Delta-G solvation = -47844.455485 eV Core-core repulsion = 41557.161220 eV Total energy + Delta-G solvation = -6287.294265 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 453.129 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -51.26017 -48.80214 -48.73259 -42.72002 -41.53934 -40.36170 -39.34258 -38.44621 -37.56333 -37.38088 -37.23120 -35.90453 -32.53618 -31.88682 -31.54230 -28.71971 -28.39340 -27.83184 -27.65022 -26.90997 -26.71287 -23.87742 -23.37033 -22.98765 -21.72501 -20.86875 -20.60316 -20.05549 -19.62957 -19.56452 -19.33952 -19.07707 -18.84663 -18.57245 -17.56171 -17.44283 -17.35663 -16.85037 -16.66502 -16.47694 -16.20071 -16.17513 -15.95004 -15.82041 -15.69328 -15.59949 -15.48030 -15.29542 -15.18669 -15.11755 -14.93861 -14.92237 -14.82142 -14.65135 -14.34409 -14.26674 -14.10522 -14.00496 -13.71730 -13.57436 -13.40868 -13.31158 -13.24340 -13.18769 -13.04510 -12.91265 -12.70892 -12.47680 -12.42618 -12.31028 -12.21973 -12.07950 -12.03690 -11.98831 -11.86179 -11.45197 -10.78267 -10.54185 -10.36001 -10.01382 -9.49733 -5.03576 -1.14625 -0.20091 0.02736 0.94291 1.24805 1.28903 1.50758 1.61575 1.93992 1.98372 2.08274 2.18850 2.41180 2.52644 2.60692 2.80886 2.82755 3.10413 3.25815 3.28928 3.29631 3.35740 3.49660 3.54280 3.60770 3.86470 3.91756 3.99175 4.01191 4.05253 4.18193 4.19260 4.29757 4.33230 4.36836 4.39818 4.41873 4.44677 4.48744 4.52230 4.54545 4.63553 4.64705 4.68671 4.72161 4.80990 4.83829 4.88796 4.90889 4.97788 5.08085 5.19624 5.35093 5.64457 5.73374 5.74046 6.05349 6.74839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 C -0.068 4.068 4 C -0.018 4.018 5 C -0.118 4.118 6 C -0.051 4.051 7 C -0.081 4.081 8 O -0.550 6.550 9 Si 0.769 3.231 10 C -0.190 4.190 11 C 0.138 3.862 12 O -0.317 6.317 13 C -0.006 4.006 14 C 0.010 3.990 15 O -0.654 6.654 16 S 2.578 3.422 17 O -0.967 6.967 18 O -0.969 6.969 19 C -0.610 4.610 20 C -0.099 4.099 21 H 0.121 0.879 22 C -0.127 4.127 23 C 0.041 3.959 24 O -0.346 6.346 25 C -0.004 4.004 26 C 0.435 3.565 27 F -0.182 7.182 28 F -0.188 7.188 29 F -0.177 7.177 30 C -0.140 4.140 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.397 0.603 39 H -0.267 1.267 40 H -0.298 1.298 41 H 0.176 0.824 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.127 0.873 48 H 0.119 0.881 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.051 0.949 52 H 0.094 0.906 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 0.658 9.984 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C -0.105 4.105 4 C -0.020 4.020 5 C -0.136 4.136 6 C -0.052 4.052 7 C -0.190 4.190 8 O -0.358 6.358 9 Si 0.673 3.327 10 C -0.208 4.208 11 C 0.089 3.911 12 O -0.230 6.230 13 C -0.100 4.100 14 C -0.033 4.033 15 O -0.613 6.613 16 S 2.678 3.322 17 O -0.965 6.965 18 O -0.967 6.967 19 C -0.740 4.740 20 C -0.119 4.119 21 H 0.139 0.861 22 C -0.165 4.165 23 C -0.001 4.001 24 O -0.264 6.264 25 C -0.099 4.099 26 C 0.380 3.620 27 F -0.164 7.164 28 F -0.170 7.170 29 F -0.158 7.158 30 C -0.177 4.177 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.247 0.753 39 H -0.193 1.193 40 H -0.225 1.225 41 H 0.193 0.807 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.182 0.818 46 H 0.181 0.819 47 H 0.145 0.855 48 H 0.137 0.863 49 H 0.097 0.903 50 H 0.132 0.868 51 H 0.070 0.930 52 H 0.113 0.887 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.952 1.248 9.629 9.904 hybrid contribution 0.760 0.201 -0.655 1.023 sum 2.712 1.449 8.974 9.486 Atomic orbital electron populations 1.24115 0.95174 1.03378 0.98126 1.22806 0.96526 0.97231 1.02572 1.19972 0.97492 0.97807 0.95254 1.19886 0.91609 0.93666 0.96872 1.20910 1.01388 1.00808 0.90494 1.20481 0.92982 0.95358 0.96393 1.25380 1.00400 0.97680 0.95544 1.86521 1.36919 1.29627 1.82694 0.94026 0.74651 0.88794 0.75182 1.21203 0.98443 1.03736 0.97403 1.18889 0.85979 0.93641 0.92569 1.86207 1.22247 1.73036 1.41496 1.23803 0.94765 1.04473 0.86933 1.17422 0.95875 1.07124 0.82890 1.85707 1.79588 1.58684 1.37322 1.05949 0.78376 0.73258 0.74623 1.93597 1.87685 1.71569 1.43642 1.93612 1.67958 1.49317 1.85850 1.30611 1.20330 1.11035 1.12007 1.21861 0.97120 0.97917 0.94967 0.86115 1.23672 0.92870 0.96835 1.03130 1.23935 0.88716 0.90608 0.96871 1.88067 1.75095 1.29964 1.33321 1.23454 0.96725 1.05599 0.84129 1.21506 0.88927 0.73965 0.77567 1.93156 1.67200 1.93971 1.62057 1.93190 1.92978 1.52231 1.78554 1.93177 1.96228 1.54521 1.71880 1.23607 0.92796 1.03972 0.97324 0.87094 0.87002 0.87647 0.87742 0.91229 0.83308 0.86416 0.75286 1.19275 1.22548 0.80706 0.85327 0.90239 0.89625 0.81753 0.81943 0.85517 0.86275 0.90273 0.86789 0.93006 0.88728 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 14.32 67.78 0.97 0.74 16 2 C -0.17 -0.83 9.50 25.65 0.24 -0.59 16 3 C -0.07 -0.39 5.23 29.10 0.15 -0.24 16 4 C -0.02 -0.07 4.50 -19.78 -0.09 -0.16 16 5 C -0.12 0.00 9.31 22.27 0.21 0.21 16 6 C -0.05 0.20 5.35 -19.86 -0.11 0.10 16 7 C -0.08 0.46 2.80 71.23 0.20 0.66 16 8 O -0.55 2.42 12.83 -148.98 -1.91 0.51 16 9 Si 0.77 -6.45 29.80 68.60 2.04 -4.41 16 10 C -0.19 1.20 7.65 22.35 0.17 1.38 16 11 C 0.14 -0.29 5.91 22.57 0.13 -0.16 16 12 O -0.32 1.85 7.57 -79.61 -0.60 1.25 16 13 C -0.01 0.09 9.81 113.37 1.11 1.21 16 14 C 0.01 0.04 4.78 22.57 0.11 0.15 16 15 O -0.65 -4.81 9.19 -60.48 -0.56 -5.36 16 16 S 2.58 18.08 4.76 -56.49 -0.27 17.81 16 17 O -0.97 -13.93 18.09 -118.57 -2.15 -16.08 16 18 O -0.97 -9.19 14.36 -118.57 -1.70 -10.90 16 19 C -0.61 1.12 4.32 71.98 0.31 1.44 16 20 C -0.10 0.32 3.85 -10.27 -0.04 0.28 16 21 H 0.12 -0.66 8.12 -2.39 -0.02 -0.67 16 22 C -0.13 0.83 6.56 31.12 0.20 1.03 16 23 C 0.04 -0.04 0.80 -10.27 -0.01 -0.05 16 24 O -0.35 0.20 8.50 -148.98 -1.27 -1.07 16 25 C 0.00 0.03 10.47 113.37 1.19 1.22 16 26 C 0.43 1.05 2.74 71.98 0.20 1.25 16 27 F -0.18 -0.37 15.13 44.97 0.68 0.31 16 28 F -0.19 -1.31 17.23 44.97 0.77 -0.54 16 29 F -0.18 -0.42 15.73 44.97 0.71 0.29 16 30 C -0.14 0.04 6.91 31.12 0.22 0.26 16 31 H 0.11 -0.13 7.84 -2.91 -0.02 -0.15 16 32 H 0.11 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.11 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.10 0.23 7.70 -2.38 -0.02 0.21 16 35 H 0.07 0.66 5.52 -2.39 -0.01 0.65 16 36 H 0.15 -0.26 8.06 -2.91 -0.02 -0.29 16 37 H 0.12 -0.58 7.96 -2.39 -0.02 -0.60 16 38 H 0.40 -4.91 8.70 -74.06 -0.64 -5.55 16 39 H -0.27 1.57 7.11 99.48 0.71 2.28 16 40 H -0.30 -0.04 7.11 99.48 0.71 0.66 16 41 H 0.18 -2.32 3.14 -2.91 -0.01 -2.33 16 42 H 0.13 -2.30 8.14 -2.39 -0.02 -2.32 16 43 H 0.08 -1.38 7.66 -2.39 -0.02 -1.40 16 44 H 0.09 -1.48 7.66 -2.39 -0.02 -1.49 16 45 H 0.16 -1.12 5.88 -2.39 -0.01 -1.14 16 46 H 0.16 -0.37 6.14 -2.40 -0.01 -0.39 16 47 H 0.13 -1.11 7.77 -2.39 -0.02 -1.12 16 48 H 0.12 -1.29 6.23 -2.39 -0.01 -1.31 16 49 H 0.08 -0.97 6.48 -2.39 -0.02 -0.98 16 50 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 51 H 0.05 -0.26 6.03 -2.39 -0.01 -0.28 16 52 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 53 H 0.13 -0.40 7.22 -2.39 -0.02 -0.41 16 Total: 0.00 -27.84 440.84 1.32 -26.52 By element: Atomic # 1 Polarization: -17.43 SS G_CDS: 0.39 Total: -17.03 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 5.17 Total: 8.70 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -8.18 Total: -31.65 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 2.16 Total: 0.06 kcal Atomic # 14 Polarization: -6.45 SS G_CDS: 2.04 Total: -4.41 kcal Atomic # 16 Polarization: 18.08 SS G_CDS: -0.27 Total: 17.81 kcal Total: -27.84 1.32 -26.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2307266_17541816.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.452 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds