Wall clock time and date at job start Mon Mar 8 2021 11:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47157 * 2 1 4 4 C 1.86301 * 109.46794 * 239.99944 * 2 1 3 5 5 C 1.86294 * 109.46929 * 120.00131 * 2 1 3 6 6 C 1.52997 * 109.47380 * 59.99956 * 5 2 1 7 7 C 1.52997 * 109.47519 * 179.97438 * 6 5 2 8 8 S 1.81398 * 109.47665 * 180.02562 * 7 6 5 9 9 O 1.42097 * 110.54107 * 62.81514 * 8 7 6 10 10 O 1.42103 * 110.54045 * 286.06703 * 8 7 6 11 11 O 1.52195 * 104.45137 * 174.43951 * 8 7 6 12 12 C 1.35908 * 113.99842 * 75.22281 * 11 8 7 13 13 C 1.38709 * 120.05406 * 274.72761 * 12 11 8 14 14 C 1.38163 * 119.94485 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.97506 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.47343 * 300.02657 * 15 14 13 17 17 Si 1.86291 * 109.47388 * 180.02562 * 15 14 13 18 18 H 1.48507 * 109.47388 * 60.00104 * 17 15 14 19 19 H 1.48504 * 109.47449 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47180 * 300.00196 * 17 15 14 21 21 C 1.38247 * 120.05434 * 0.02562 * 14 13 12 22 22 C 1.38287 * 120.11192 * 0.02562 * 21 14 13 23 23 C 1.38120 * 120.05484 * 0.24693 * 22 21 14 24 24 N 1.48010 * 120.03023 * 179.74284 * 23 22 21 25 25 O 1.21798 * 119.99607 * 5.56827 * 24 23 22 26 26 O 1.21792 * 120.00016 * 185.56526 * 24 23 22 27 27 H 1.09005 * 109.47382 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.47305 * 60.00083 * 1 2 3 29 29 H 1.08997 * 109.47660 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46916 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46945 * 300.00138 * 3 2 1 32 32 H 1.08999 * 109.47158 * 60.00111 * 3 2 1 33 33 H 1.08993 * 109.47384 * 300.00096 * 4 2 1 34 34 H 1.08999 * 109.47128 * 60.00702 * 4 2 1 35 35 H 1.09007 * 109.46744 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47702 * 299.99765 * 5 2 1 37 37 H 1.09009 * 109.46878 * 179.97438 * 5 2 1 38 38 H 1.08999 * 109.47117 * 59.99768 * 6 5 2 39 39 H 1.08996 * 109.47185 * 299.99590 * 6 5 2 40 40 H 1.09001 * 109.47390 * 59.99915 * 7 6 5 41 41 H 1.09002 * 109.47312 * 300.00591 * 7 6 5 42 42 H 1.07999 * 120.03119 * 0.02562 * 13 12 11 43 43 H 1.08999 * 109.47325 * 60.02437 * 15 14 13 44 44 H 0.96698 * 113.99571 * 299.99950 * 16 15 14 45 45 H 1.07995 * 119.94512 * 179.97438 * 21 14 13 46 46 H 1.07998 * 119.97246 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4839 -0.8782 1.5211 6 6 1.9739 -2.3207 1.5211 7 6 2.4844 -3.0422 2.7700 8 16 1.8804 -4.7527 2.7697 9 8 2.3941 -5.4626 1.6511 10 8 0.4966 -4.7928 3.0903 11 8 2.5623 -5.3965 3.9683 12 6 2.0347 -5.0315 5.1664 13 6 2.4649 -3.8695 5.7898 14 6 1.9266 -3.5002 7.0075 15 6 2.3939 -2.2382 7.6857 16 8 3.7973 -2.3257 7.9400 17 14 1.4830 -2.0251 9.2967 18 1 1.7548 -3.1898 10.1770 19 1 1.9430 -0.7811 9.9647 20 1 0.0245 -1.9341 9.0324 21 6 0.9604 -4.2882 7.6049 22 6 0.5306 -5.4477 6.9859 23 6 1.0697 -5.8241 5.7712 24 7 0.6134 -7.0682 5.1120 25 8 -0.3078 -7.7071 5.5882 26 8 1.1590 -7.4530 4.0933 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4111 35 1 3.5740 -0.8779 -1.5214 36 1 2.1206 -0.3645 2.4111 37 1 3.5740 -0.8786 1.5208 38 1 2.3372 -2.8345 0.6311 39 1 0.8840 -2.3207 1.5212 40 1 2.1214 -2.5285 3.6602 41 1 3.5744 -3.0422 2.7696 42 1 3.2193 -3.2533 5.3234 43 1 2.1943 -1.3833 7.0396 44 1 4.0484 -3.0655 8.5098 45 1 0.5412 -3.9981 8.5569 46 1 -0.2240 -6.0618 7.4548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2392270_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:50:51 Heat of formation + Delta-G solvation = -152.319989 kcal Electronic energy + Delta-G solvation = -31747.003043 eV Core-core repulsion = 27277.959897 eV Total energy + Delta-G solvation = -4469.043146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.76982 -42.38557 -40.32415 -38.63474 -37.92345 -37.66097 -37.50155 -35.96641 -33.73024 -32.35002 -29.63802 -29.08772 -28.42727 -28.31478 -28.25613 -25.97273 -25.37373 -23.64592 -22.95713 -21.84247 -20.69232 -20.12683 -19.67588 -19.23718 -18.83491 -18.62437 -18.26762 -17.22417 -16.91855 -16.48127 -16.22112 -16.06521 -15.71379 -15.53859 -14.89553 -14.78818 -14.55975 -14.18186 -14.04692 -13.99891 -13.95005 -13.81321 -13.65890 -13.61038 -13.50954 -13.48267 -13.37752 -13.15000 -13.06863 -13.01791 -13.00828 -12.97679 -12.65794 -12.54053 -12.31322 -12.08790 -11.94404 -11.85723 -11.80510 -11.05362 -10.74039 -10.69579 -10.68850 -10.52968 -10.43230 -1.83006 -1.23996 -0.57139 -0.14540 0.01804 0.62904 1.09114 1.51096 1.55093 1.68084 1.90291 1.99768 1.99914 2.02516 2.33083 2.54830 2.73046 2.74079 2.96709 3.09623 3.28098 3.47900 3.50551 3.55881 3.61982 3.95480 4.10325 4.11423 4.28294 4.31567 4.39609 4.50361 4.54463 4.60054 4.74960 4.80417 4.81057 4.82919 4.85890 4.86906 4.88319 4.89352 5.04869 5.08572 5.45057 5.60349 5.66097 5.67943 6.14739 6.62248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.070 2.930 3 C -0.461 4.461 4 C -0.480 4.480 5 C -0.406 4.406 6 C -0.123 4.123 7 C -0.617 4.617 8 S 2.562 3.438 9 O -0.957 6.957 10 O -0.985 6.985 11 O -0.663 6.663 12 C 0.120 3.880 13 C -0.105 4.105 14 C -0.033 4.033 15 C -0.084 4.084 16 O -0.541 6.541 17 Si 0.966 3.034 18 H -0.241 1.241 19 H -0.271 1.271 20 H -0.242 1.242 21 C -0.099 4.099 22 C -0.023 4.023 23 C -0.057 4.057 24 N 0.030 4.970 25 O -0.126 6.126 26 O -0.222 6.222 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.204 0.796 43 H 0.159 0.841 44 H 0.395 0.605 45 H 0.186 0.814 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 11.171 8.618 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.262 2.738 3 C -0.568 4.568 4 C -0.585 4.585 5 C -0.492 4.492 6 C -0.162 4.162 7 C -0.749 4.749 8 S 2.664 3.336 9 O -0.955 6.955 10 O -0.983 6.983 11 O -0.620 6.620 12 C 0.077 3.923 13 C -0.125 4.125 14 C -0.034 4.034 15 C -0.194 4.194 16 O -0.348 6.348 17 Si 0.788 3.212 18 H -0.164 1.164 19 H -0.196 1.196 20 H -0.165 1.165 21 C -0.117 4.117 22 C -0.041 4.041 23 C -0.143 4.143 24 N 0.546 4.454 25 O -0.354 6.354 26 O -0.422 6.422 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.191 0.809 41 H 0.195 0.805 42 H 0.220 0.780 43 H 0.176 0.824 44 H 0.245 0.755 45 H 0.203 0.797 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.017 11.555 8.983 14.774 hybrid contribution 0.216 -1.202 -0.981 1.566 sum 2.233 10.354 8.002 13.275 Atomic orbital electron populations 1.26453 1.22833 1.04207 1.04582 0.78287 0.64916 0.65537 0.65064 1.26246 1.06517 1.19556 1.04470 1.26514 1.06702 1.08276 1.16978 1.26187 1.07477 0.98496 1.17062 1.21266 1.02353 0.98268 0.94289 1.30865 1.15825 1.17537 1.10686 1.06462 0.74090 0.79597 0.73443 1.93599 1.80226 1.71895 1.49774 1.93593 1.35279 1.87590 1.81859 1.85831 1.70947 1.78125 1.27137 1.18167 0.93709 0.95761 0.84676 1.21801 1.00955 0.93505 0.96259 1.21075 0.92770 0.97082 0.92446 1.25328 0.88376 0.95886 1.09822 1.86575 1.19843 1.55199 1.73196 0.85417 0.79303 0.81385 0.75114 1.16420 1.19618 1.16524 1.21706 0.96458 0.91981 1.01591 1.21462 0.96698 0.96893 0.89092 1.21730 1.04148 0.88976 0.99428 1.43733 0.99242 1.02243 1.00172 1.94489 1.19295 1.55318 1.66257 1.94614 1.58841 1.74255 1.14484 0.90640 0.91726 0.91741 0.90990 0.91833 0.90724 0.91782 0.91727 0.90976 0.87797 0.88295 0.89873 0.89589 0.80905 0.80498 0.77953 0.82363 0.75463 0.79728 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.97 8.65 113.37 0.98 2.96 16 2 Si 1.07 -8.56 12.19 68.60 0.84 -7.72 16 3 C -0.46 2.83 8.65 113.37 0.98 3.81 16 4 C -0.48 1.44 8.65 113.37 0.98 2.43 16 5 C -0.41 4.02 4.45 71.98 0.32 4.34 16 6 C -0.12 0.66 4.59 30.59 0.14 0.80 16 7 C -0.62 4.20 5.11 71.98 0.37 4.57 16 8 S 2.56 18.78 4.65 -56.49 -0.26 18.52 16 9 O -0.96 -15.49 18.09 -118.57 -2.15 -17.64 16 10 O -0.98 -12.38 15.94 -117.84 -1.88 -14.26 16 11 O -0.66 -4.77 8.30 -58.61 -0.49 -5.26 16 12 C 0.12 0.27 4.70 22.51 0.11 0.37 16 13 C -0.11 0.87 8.03 22.36 0.18 1.05 16 14 C -0.03 0.39 5.39 -19.88 -0.11 0.28 16 15 C -0.08 1.27 2.82 71.23 0.20 1.47 16 16 O -0.54 7.04 12.77 -148.98 -1.90 5.14 16 17 Si 0.97 -12.84 25.07 68.60 1.72 -11.12 16 18 H -0.24 3.24 7.11 99.48 0.71 3.94 16 19 H -0.27 2.13 7.11 99.48 0.71 2.83 16 20 H -0.24 3.11 7.11 99.48 0.71 3.82 16 21 C -0.10 1.09 8.67 22.28 0.19 1.28 16 22 C -0.02 0.10 9.55 22.25 0.21 0.31 16 23 C -0.06 -0.30 6.24 36.47 0.23 -0.07 16 24 N 0.03 0.45 4.36 -46.24 -0.20 0.24 16 25 O -0.13 -1.72 18.46 18.89 0.35 -1.37 16 26 O -0.22 -4.61 16.37 26.28 0.43 -4.18 16 27 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 28 H 0.06 -0.19 7.96 -2.39 -0.02 -0.20 16 29 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 30 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 31 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 33 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 34 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 35 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 36 H 0.10 -1.40 7.96 -2.39 -0.02 -1.42 16 37 H 0.10 -1.19 7.96 -2.38 -0.02 -1.21 16 38 H 0.08 -0.37 7.79 -2.39 -0.02 -0.39 16 39 H 0.09 -0.52 7.79 -2.39 -0.02 -0.54 16 40 H 0.17 -2.45 6.62 -2.39 -0.02 -2.47 16 41 H 0.18 -2.26 8.14 -2.39 -0.02 -2.28 16 42 H 0.20 -3.13 7.08 -2.91 -0.02 -3.15 16 43 H 0.16 -3.06 7.96 -2.39 -0.02 -3.08 16 44 H 0.40 -7.38 8.70 -74.06 -0.64 -8.02 16 45 H 0.19 -3.11 4.87 -2.91 -0.01 -3.12 16 46 H 0.19 -1.57 7.62 -2.91 -0.02 -1.59 16 Total: 0.00 -35.76 396.87 2.36 -33.40 By element: Atomic # 1 Polarization: -20.47 SS G_CDS: 1.12 Total: -19.35 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 4.78 Total: 23.59 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -0.20 Total: 0.24 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -5.63 Total: -37.56 kcal Atomic # 14 Polarization: -21.40 SS G_CDS: 2.56 Total: -18.84 kcal Atomic # 16 Polarization: 18.78 SS G_CDS: -0.26 Total: 18.52 kcal Total: -35.76 2.36 -33.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2392270_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.921 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds