Wall clock time and date at job start Mon Mar 8 2021 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99962 * 2 1 4 4 O 1.20826 * 120.00473 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99834 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84920 * 48.79399 * 5 3 2 7 7 C 1.53779 * 113.61592 * 179.97438 * 5 3 2 8 8 C 1.53779 * 87.08373 * 140.06487 * 7 5 3 9 9 H 1.08994 * 113.61962 * 89.19620 * 8 7 5 10 10 S 1.81397 * 113.61472 * 220.02230 * 8 7 5 11 11 O 1.42100 * 110.54909 * 68.36913 * 10 8 7 12 12 O 1.42107 * 110.53867 * 291.62186 * 10 8 7 13 13 O 1.52200 * 104.45143 * 179.97438 * 10 8 7 14 14 C 1.35868 * 113.99755 * 74.99849 * 13 10 8 15 15 C 1.38814 * 119.93967 * 90.00321 * 14 13 10 16 16 C 1.50705 * 119.96164 * 0.02562 * 15 14 13 17 17 O 1.42908 * 109.46603 * 74.72944 * 16 15 14 18 18 Si 1.86298 * 109.46780 * 194.72243 * 16 15 14 19 19 C 1.37919 * 120.06831 * 179.74435 * 15 14 13 20 20 C 1.39363 * 119.93332 * 0.24922 * 19 15 14 21 21 C 1.48364 * 120.06169 * 179.97438 * 20 19 15 22 22 C 1.39354 * 120.12428 * 359.73099 * 21 20 19 23 23 C 1.38018 * 119.87446 * 179.76718 * 22 21 20 24 24 C 1.38321 * 120.12022 * 0.52580 * 23 22 21 25 25 C 1.38322 * 120.25154 * 359.69967 * 24 23 22 26 26 C 1.38020 * 120.12315 * 0.04671 * 25 24 23 27 27 C 1.39395 * 119.87127 * 0.02562 * 20 19 15 28 28 C 1.37883 * 119.93237 * 359.97438 * 27 20 19 29 29 C 1.53782 * 113.68665 * 277.53363 * 5 3 2 30 30 H 1.08996 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47304 * 300.00680 * 1 2 3 32 32 H 1.09002 * 109.46790 * 60.00196 * 1 2 3 33 33 H 1.08997 * 113.61676 * 25.51073 * 7 5 3 34 34 H 1.09002 * 113.61075 * 254.61003 * 7 5 3 35 35 H 1.08991 * 109.47403 * 314.72461 * 16 15 14 36 36 H 0.96700 * 113.99903 * 299.99099 * 17 16 15 37 37 H 1.48506 * 109.99834 * 60.00830 * 18 16 15 38 38 H 1.48502 * 110.00011 * 181.32094 * 18 16 15 39 39 H 1.08005 * 120.03294 * 180.27739 * 19 15 14 40 40 H 1.07997 * 120.06318 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.93907 * 180.24848 * 23 22 21 42 42 H 1.08000 * 119.87502 * 179.72071 * 24 23 22 43 43 H 1.07998 * 119.94463 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.06599 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.03248 * 179.97438 * 27 20 19 46 46 H 1.07999 * 119.96589 * 179.97438 * 28 27 20 47 47 H 1.08998 * 113.61530 * 105.46164 * 29 5 3 48 48 H 1.08997 * 113.61645 * 334.55299 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0234 0.6363 -0.7566 7 6 4.1078 2.7141 -0.0011 8 6 5.1829 2.2264 0.9844 9 1 6.0823 1.8492 0.4981 10 16 5.5430 3.4101 2.3110 11 8 4.4329 3.5269 3.1902 12 8 6.1882 4.5634 1.7885 13 8 6.6145 2.7271 3.1488 14 6 7.8470 2.7276 2.5769 15 6 8.7239 3.7755 2.8216 16 6 8.3079 4.9105 3.7215 17 8 8.3383 4.4751 5.0823 18 14 9.4817 6.3402 3.5007 19 6 9.9775 3.7760 2.2466 20 6 10.3617 2.7257 1.4151 21 6 11.7093 2.7237 0.7946 22 6 12.5924 3.7742 1.0369 23 6 13.8466 3.7647 0.4609 24 6 14.2236 2.7205 -0.3642 25 6 13.3495 1.6775 -0.6119 26 6 12.0947 1.6740 -0.0371 27 6 9.4769 1.6776 1.1666 28 6 8.2249 1.6826 1.7442 29 6 4.1935 1.1224 1.3952 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.4182 3.4403 0.4291 34 1 4.5093 3.0291 -0.9643 35 1 7.2973 5.2269 3.4638 36 1 7.7497 3.7313 5.2705 37 1 9.4593 6.8024 2.0895 38 1 9.1012 7.4542 4.4059 39 1 10.6610 4.5894 2.4410 40 1 12.2971 4.5925 1.6768 41 1 14.5332 4.5763 0.6512 42 1 15.2043 2.7194 -0.8164 43 1 13.6491 0.8645 -1.2566 44 1 11.4128 0.8595 -0.2314 45 1 9.7717 0.8626 0.5222 46 1 7.5388 0.8710 1.5518 47 1 4.6642 0.1531 1.5590 48 1 3.5273 1.4133 2.2074 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2516932_13206342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:45:56 Heat of formation + Delta-G solvation = -124.963854 kcal Electronic energy + Delta-G solvation = -36734.937295 eV Core-core repulsion = 31816.044712 eV Total energy + Delta-G solvation = -4918.892583 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.110 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.62246 -41.96863 -40.65630 -39.72660 -39.08626 -38.39432 -37.69315 -37.39859 -37.27978 -33.64448 -33.25377 -31.92513 -30.01726 -29.83947 -27.89905 -27.38533 -27.13692 -25.32039 -24.18151 -23.59715 -22.69899 -22.62401 -21.42588 -20.89671 -19.96435 -19.41690 -18.95876 -18.54689 -18.40791 -18.10778 -17.71465 -17.54032 -17.18922 -16.85202 -16.71417 -16.36607 -15.91201 -15.69707 -15.46393 -15.31833 -15.25136 -14.85558 -14.67814 -14.54559 -14.40726 -14.29929 -14.14377 -14.10582 -13.96132 -13.92240 -13.59080 -13.49921 -13.34723 -13.30967 -13.21204 -13.15464 -13.00726 -12.83277 -12.29843 -12.14696 -12.08090 -11.92115 -11.87105 -11.78791 -11.41797 -11.37552 -11.16054 -10.84838 -10.31366 -10.01551 -9.24607 -4.92896 -1.31936 -0.59332 -0.13119 0.34396 0.53485 0.82020 1.02865 1.34616 1.56693 1.68547 2.03279 2.14273 2.29558 2.42591 2.67540 2.85589 2.90859 2.98577 3.18077 3.26443 3.27585 3.35314 3.63521 3.72778 3.74302 3.82801 3.83655 3.88071 3.91523 3.94749 4.10271 4.10793 4.14532 4.17028 4.20080 4.25214 4.31018 4.33416 4.40537 4.42147 4.49853 4.54286 4.54905 4.70091 4.76347 4.83603 4.91581 4.93457 4.98464 5.27337 5.32820 5.46727 5.47248 5.48778 5.88269 6.48335 6.60309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.139 0.861 7 C -0.087 4.087 8 C -0.652 4.652 9 H 0.163 0.837 10 S 2.591 3.409 11 O -0.915 6.915 12 O -0.942 6.942 13 O -0.659 6.659 14 C 0.067 3.933 15 C -0.071 4.071 16 C -0.102 4.102 17 O -0.529 6.529 18 Si 0.745 3.255 19 C -0.088 4.088 20 C -0.010 4.010 21 C -0.060 4.060 22 C -0.103 4.103 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.103 4.103 27 C -0.094 4.094 28 C -0.119 4.119 29 C -0.092 4.092 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.368 0.632 37 H -0.240 1.240 38 H -0.248 1.248 39 H 0.147 0.853 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.107 0.893 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -6.275 -4.414 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.157 0.843 7 C -0.125 4.125 8 C -0.758 4.758 9 H 0.181 0.819 10 S 2.686 3.314 11 O -0.913 6.913 12 O -0.941 6.941 13 O -0.618 6.618 14 C 0.025 3.975 15 C -0.074 4.074 16 C -0.209 4.209 17 O -0.335 6.335 18 Si 0.642 3.358 19 C -0.105 4.105 20 C -0.010 4.010 21 C -0.060 4.060 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.139 4.139 29 C -0.130 4.130 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.216 0.784 37 H -0.164 1.164 38 H -0.173 1.173 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.125 0.875 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.490 -4.165 -3.973 7.954 hybrid contribution -2.155 -1.390 -0.620 2.638 sum 3.335 -5.555 -4.592 7.942 Atomic orbital electron populations 1.23370 0.75601 1.04183 1.02930 1.86499 1.23992 1.32949 1.83730 1.23433 0.91471 0.81700 0.72511 1.90715 1.66831 1.36387 1.44560 1.22422 0.88005 1.00051 1.01048 0.84350 1.22623 0.93890 0.95993 1.00002 1.32264 1.08230 1.16454 1.18882 0.81890 1.05754 0.74512 0.75476 0.75611 1.93684 1.51509 1.85034 1.61053 1.93652 1.72315 1.46890 1.81202 1.85717 1.28306 1.85357 1.62441 1.17930 0.82131 0.97845 0.99552 1.20374 0.93837 0.95485 0.97718 1.25851 1.09069 1.03129 0.82877 1.86764 1.68526 1.54733 1.23435 0.93594 0.87431 0.74061 0.80712 1.20977 0.94406 0.98660 0.96485 1.18938 0.93171 0.93829 0.95107 1.18658 0.92389 0.96145 0.98857 1.21330 0.93649 0.97733 0.99410 1.21183 0.96226 0.98839 0.97132 1.21358 0.99819 0.93968 0.97576 1.21157 0.93745 0.98863 0.99868 1.21243 0.96724 0.97688 0.96451 1.21150 0.91991 0.98554 0.99506 1.21275 0.98454 0.97308 0.96888 1.22676 0.95469 0.98432 0.96442 0.87667 0.91540 0.91601 0.87328 0.87516 0.89632 0.78377 1.16435 1.17256 0.83584 0.85202 0.85267 0.85625 0.85510 0.85513 0.83564 0.83558 0.87478 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.31 10.57 -39.24 -0.41 -0.72 16 3 C 0.47 0.71 7.49 36.01 0.27 0.98 16 4 O -0.50 -2.35 15.65 -18.75 -0.29 -2.64 16 5 C -0.10 0.17 4.26 -90.96 -0.39 -0.22 16 6 H 0.14 -0.64 8.14 -51.93 -0.42 -1.06 16 7 C -0.09 0.10 6.99 -25.92 -0.18 -0.08 16 8 C -0.65 1.29 4.01 -25.89 -0.10 1.19 16 9 H 0.16 -0.83 6.07 -51.93 -0.32 -1.14 16 10 S 2.59 5.45 4.89 -107.50 -0.53 4.92 16 11 O -0.91 -4.89 17.27 -67.04 -1.16 -6.05 16 12 O -0.94 -3.97 14.23 -67.03 -0.95 -4.93 16 13 O -0.66 -0.85 9.00 -51.65 -0.46 -1.31 16 14 C 0.07 0.06 4.74 -39.14 -0.19 -0.13 16 15 C -0.07 -0.13 4.68 -104.52 -0.49 -0.62 16 16 C -0.10 -0.32 2.18 36.01 0.08 -0.24 16 17 O -0.53 -1.63 12.65 -35.23 -0.45 -2.07 16 18 Si 0.75 1.04 30.17 -169.99 -5.13 -4.09 16 19 C -0.09 -0.01 8.03 -39.28 -0.32 -0.32 16 20 C -0.01 0.01 5.88 -104.88 -0.62 -0.61 16 21 C -0.06 0.05 5.88 -104.90 -0.62 -0.56 16 22 C -0.10 0.13 9.43 -39.25 -0.37 -0.24 16 23 C -0.12 0.19 10.03 -39.63 -0.40 -0.21 16 24 C -0.11 0.18 10.04 -39.52 -0.40 -0.22 16 25 C -0.12 0.21 10.03 -39.63 -0.40 -0.19 16 26 C -0.10 0.18 9.43 -39.24 -0.37 -0.19 16 27 C -0.09 0.22 9.42 -39.28 -0.37 -0.15 16 28 C -0.12 0.24 8.48 -39.48 -0.33 -0.09 16 29 C -0.09 0.21 7.19 -25.89 -0.19 0.02 16 30 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 31 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 32 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 33 H 0.11 0.05 7.40 -51.93 -0.38 -0.34 16 34 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 35 H 0.09 0.38 5.42 -51.93 -0.28 0.10 16 36 H 0.37 0.41 8.56 45.56 0.39 0.80 16 37 H -0.24 -0.57 7.11 56.52 0.40 -0.17 16 38 H -0.25 -0.98 7.11 56.52 0.40 -0.58 16 39 H 0.15 -0.29 3.26 -52.48 -0.17 -0.46 16 40 H 0.13 -0.42 6.20 -52.49 -0.33 -0.74 16 41 H 0.13 -0.44 8.06 -52.49 -0.42 -0.86 16 42 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 43 H 0.13 -0.44 8.06 -52.49 -0.42 -0.86 16 44 H 0.13 -0.50 6.20 -52.49 -0.33 -0.83 16 45 H 0.15 -0.74 6.20 -52.48 -0.33 -1.06 16 46 H 0.15 -0.78 7.21 -52.49 -0.38 -1.16 16 47 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 48 H 0.11 -0.10 7.38 -51.93 -0.38 -0.48 16 LS Contribution 404.32 15.07 6.09 6.09 Total: 0.00 -11.63 404.32 -13.10 -24.72 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: -5.50 Total: -13.09 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.30 Total: -0.83 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -3.73 Total: -17.72 kcal Atomic # 14 Polarization: 1.04 SS G_CDS: -5.13 Total: -4.09 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -0.53 Total: 4.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -11.63 -13.10 -24.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2516932_13206342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.242 kcal (2) G-P(sol) polarization free energy of solvation -11.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds