Wall clock time and date at job start Mon Mar 8 2021 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99962 * 2 1 4 4 O 1.20826 * 120.00473 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99834 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84920 * 48.79399 * 5 3 2 7 7 C 1.53779 * 113.61592 * 179.97438 * 5 3 2 8 8 C 1.53779 * 87.08373 * 140.06487 * 7 5 3 9 9 H 1.08994 * 113.61962 * 89.19620 * 8 7 5 10 10 S 1.81397 * 113.61472 * 220.02230 * 8 7 5 11 11 O 1.42100 * 110.54909 * 68.36913 * 10 8 7 12 12 O 1.42107 * 110.53867 * 291.62186 * 10 8 7 13 13 O 1.52200 * 104.45143 * 179.97438 * 10 8 7 14 14 C 1.35868 * 113.99755 * 74.99849 * 13 10 8 15 15 C 1.38814 * 119.93967 * 90.00321 * 14 13 10 16 16 C 1.50705 * 119.96164 * 0.02562 * 15 14 13 17 17 O 1.42908 * 109.46603 * 74.72944 * 16 15 14 18 18 Si 1.86298 * 109.46780 * 194.72243 * 16 15 14 19 19 C 1.37919 * 120.06831 * 179.74435 * 15 14 13 20 20 C 1.39363 * 119.93332 * 0.24922 * 19 15 14 21 21 C 1.48364 * 120.06169 * 179.97438 * 20 19 15 22 22 C 1.39354 * 120.12428 * 359.73099 * 21 20 19 23 23 C 1.38018 * 119.87446 * 179.76718 * 22 21 20 24 24 C 1.38321 * 120.12022 * 0.52580 * 23 22 21 25 25 C 1.38322 * 120.25154 * 359.69967 * 24 23 22 26 26 C 1.38020 * 120.12315 * 0.04671 * 25 24 23 27 27 C 1.39395 * 119.87127 * 0.02562 * 20 19 15 28 28 C 1.37883 * 119.93237 * 359.97438 * 27 20 19 29 29 C 1.53782 * 113.68665 * 277.53363 * 5 3 2 30 30 H 1.08996 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47304 * 300.00680 * 1 2 3 32 32 H 1.09002 * 109.46790 * 60.00196 * 1 2 3 33 33 H 1.08997 * 113.61676 * 25.51073 * 7 5 3 34 34 H 1.09002 * 113.61075 * 254.61003 * 7 5 3 35 35 H 1.08991 * 109.47403 * 314.72461 * 16 15 14 36 36 H 0.96700 * 113.99903 * 299.99099 * 17 16 15 37 37 H 1.48506 * 109.99834 * 60.00830 * 18 16 15 38 38 H 1.48502 * 110.00011 * 181.32094 * 18 16 15 39 39 H 1.08005 * 120.03294 * 180.27739 * 19 15 14 40 40 H 1.07997 * 120.06318 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.93907 * 180.24848 * 23 22 21 42 42 H 1.08000 * 119.87502 * 179.72071 * 24 23 22 43 43 H 1.07998 * 119.94463 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.06599 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.03248 * 179.97438 * 27 20 19 46 46 H 1.07999 * 119.96589 * 179.97438 * 28 27 20 47 47 H 1.08998 * 113.61530 * 105.46164 * 29 5 3 48 48 H 1.08997 * 113.61645 * 334.55299 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0234 0.6363 -0.7566 7 6 4.1078 2.7141 -0.0011 8 6 5.1829 2.2264 0.9844 9 1 6.0823 1.8492 0.4981 10 16 5.5430 3.4101 2.3110 11 8 4.4329 3.5269 3.1902 12 8 6.1882 4.5634 1.7885 13 8 6.6145 2.7271 3.1488 14 6 7.8470 2.7276 2.5769 15 6 8.7239 3.7755 2.8216 16 6 8.3079 4.9105 3.7215 17 8 8.3383 4.4751 5.0823 18 14 9.4817 6.3402 3.5007 19 6 9.9775 3.7760 2.2466 20 6 10.3617 2.7257 1.4151 21 6 11.7093 2.7237 0.7946 22 6 12.5924 3.7742 1.0369 23 6 13.8466 3.7647 0.4609 24 6 14.2236 2.7205 -0.3642 25 6 13.3495 1.6775 -0.6119 26 6 12.0947 1.6740 -0.0371 27 6 9.4769 1.6776 1.1666 28 6 8.2249 1.6826 1.7442 29 6 4.1935 1.1224 1.3952 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.4182 3.4403 0.4291 34 1 4.5093 3.0291 -0.9643 35 1 7.2973 5.2269 3.4638 36 1 7.7497 3.7313 5.2705 37 1 9.4593 6.8024 2.0895 38 1 9.1012 7.4542 4.4059 39 1 10.6610 4.5894 2.4410 40 1 12.2971 4.5925 1.6768 41 1 14.5332 4.5763 0.6512 42 1 15.2043 2.7194 -0.8164 43 1 13.6491 0.8645 -1.2566 44 1 11.4128 0.8595 -0.2314 45 1 9.7717 0.8626 0.5222 46 1 7.5388 0.8710 1.5518 47 1 4.6642 0.1531 1.5590 48 1 3.5273 1.4133 2.2074 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2516932_13206342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:45:55 Heat of formation + Delta-G solvation = -125.247601 kcal Electronic energy + Delta-G solvation = -36734.949600 eV Core-core repulsion = 31816.044712 eV Total energy + Delta-G solvation = -4918.904887 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.110 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59236 -41.99276 -40.49886 -39.66096 -39.01290 -38.57991 -37.82761 -37.51502 -37.46908 -33.52830 -33.13438 -31.72202 -29.96419 -29.70092 -27.81989 -27.28029 -27.11627 -25.20347 -24.06836 -23.58619 -22.58277 -22.53335 -21.37789 -20.79722 -19.99259 -19.43179 -19.02078 -18.59252 -18.42337 -18.08653 -17.71595 -17.54002 -17.08654 -16.81873 -16.61750 -16.41224 -15.94265 -15.56605 -15.35632 -15.26771 -15.11342 -14.83362 -14.67799 -14.55691 -14.27436 -14.25565 -14.15089 -14.07732 -13.98390 -13.87681 -13.66439 -13.52476 -13.42154 -13.33000 -13.15810 -13.06115 -12.93172 -12.78532 -12.26101 -12.08378 -11.95693 -11.91062 -11.81561 -11.72310 -11.48520 -11.47347 -11.28976 -10.71917 -10.21746 -9.80510 -9.09343 -5.10720 -1.35856 -0.50511 -0.00459 0.55473 0.64397 0.82359 0.97102 1.17315 1.49993 1.62086 1.83316 2.26458 2.29874 2.45751 2.74771 2.92270 3.05630 3.13470 3.21511 3.38628 3.46514 3.53722 3.65500 3.70117 3.83021 3.93356 4.00231 4.08989 4.14966 4.16448 4.19927 4.22835 4.24536 4.27693 4.34552 4.36298 4.51034 4.56519 4.60515 4.65312 4.67203 4.69493 4.70529 4.88260 4.91911 4.95083 5.10725 5.12812 5.21430 5.25503 5.51810 5.64515 5.67492 5.68657 6.11019 6.32236 6.54805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.087 4.087 6 H 0.182 0.818 7 C -0.104 4.104 8 C -0.618 4.618 9 H 0.207 0.793 10 S 2.577 3.423 11 O -0.966 6.966 12 O -0.975 6.975 13 O -0.660 6.660 14 C 0.044 3.956 15 C -0.096 4.096 16 C -0.122 4.122 17 O -0.539 6.539 18 Si 0.816 3.184 19 C -0.100 4.100 20 C -0.012 4.012 21 C -0.074 4.074 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.106 4.106 27 C -0.086 4.086 28 C -0.110 4.110 29 C -0.096 4.096 30 H 0.133 0.867 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.373 0.627 37 H -0.253 1.253 38 H -0.289 1.289 39 H 0.157 0.843 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.182 0.818 46 H 0.188 0.812 47 H 0.149 0.851 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -9.737 -6.647 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.306 3.694 4 O -0.431 6.431 5 C -0.106 4.106 6 H 0.199 0.801 7 C -0.142 4.142 8 C -0.729 4.729 9 H 0.224 0.776 10 S 2.679 3.321 11 O -0.964 6.964 12 O -0.974 6.974 13 O -0.619 6.619 14 C 0.002 3.998 15 C -0.099 4.099 16 C -0.228 4.228 17 O -0.346 6.346 18 Si 0.715 3.285 19 C -0.117 4.117 20 C -0.013 4.013 21 C -0.074 4.074 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.124 4.124 27 C -0.104 4.104 28 C -0.130 4.130 29 C -0.134 4.134 30 H 0.151 0.849 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.222 0.778 37 H -0.178 1.178 38 H -0.216 1.216 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.206 0.794 47 H 0.167 0.833 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.086 -7.627 -6.165 12.099 hybrid contribution -2.653 -0.350 0.035 2.676 sum 4.433 -7.977 -6.131 10.994 Atomic orbital electron populations 1.23563 0.75032 1.05824 1.02394 1.86502 1.24709 1.32596 1.83333 1.24201 0.92894 0.81203 0.71120 1.90702 1.68060 1.37739 1.46640 1.22645 0.85627 0.99951 1.02400 0.80091 1.22783 0.93946 0.96397 1.01108 1.32089 1.09813 1.14677 1.16305 0.77557 1.05903 0.73724 0.76244 0.76237 1.93614 1.53188 1.86222 1.63403 1.93603 1.72649 1.49473 1.81644 1.85691 1.28588 1.84890 1.62730 1.18314 0.81641 0.98884 1.00946 1.20343 0.95130 0.95704 0.98677 1.26070 1.08445 1.05061 0.83191 1.86708 1.68733 1.55133 1.23997 0.92886 0.86181 0.71322 0.78093 1.21120 0.94031 0.99690 0.96894 1.19110 0.93625 0.93971 0.94625 1.18789 0.92399 0.96735 0.99511 1.21604 0.93981 0.98321 0.99776 1.21413 0.96487 0.99442 0.97318 1.21635 1.00564 0.94102 0.97564 1.21446 0.93860 0.99261 1.00118 1.21549 0.97143 0.97954 0.95722 1.21596 0.91242 0.98592 0.98964 1.21728 0.99241 0.96972 0.95039 1.22840 0.95009 1.00019 0.95534 0.84929 0.92401 0.91927 0.90065 0.85118 0.91867 0.77804 1.17835 1.21647 0.82659 0.84255 0.84187 0.84539 0.83919 0.83037 0.80053 0.79442 0.83277 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.35 10.57 -51.36 -0.54 -0.89 16 3 C 0.46 1.35 7.49 71.24 0.53 1.88 16 4 O -0.54 -5.99 15.65 21.96 0.34 -5.65 16 5 C -0.09 0.50 4.26 -11.01 -0.05 0.45 16 6 H 0.18 -2.57 8.14 -2.39 -0.02 -2.59 16 7 C -0.10 0.31 6.99 31.12 0.22 0.53 16 8 C -0.62 3.55 4.01 31.14 0.12 3.68 16 9 H 0.21 -3.06 6.07 -2.39 -0.01 -3.08 16 10 S 2.58 14.86 4.89 -56.49 -0.28 14.58 16 11 O -0.97 -13.68 17.27 -118.57 -2.05 -15.73 16 12 O -0.98 -10.63 14.23 -118.57 -1.69 -12.32 16 13 O -0.66 -2.27 9.00 -61.16 -0.55 -2.82 16 14 C 0.04 0.06 4.74 22.56 0.11 0.17 16 15 C -0.10 -0.43 4.68 -19.80 -0.09 -0.52 16 16 C -0.12 -1.07 2.18 71.24 0.16 -0.91 16 17 O -0.54 -4.75 12.65 -148.98 -1.89 -6.64 16 18 Si 0.82 4.09 30.17 68.60 2.07 6.16 16 19 C -0.10 -0.03 8.03 22.47 0.18 0.15 16 20 C -0.01 0.04 5.88 -20.03 -0.12 -0.08 16 21 C -0.07 0.23 5.88 -20.04 -0.12 0.12 16 22 C -0.12 0.34 9.43 22.49 0.21 0.55 16 23 C -0.13 0.46 10.03 22.24 0.22 0.68 16 24 C -0.12 0.50 10.04 22.31 0.22 0.73 16 25 C -0.13 0.68 10.03 22.24 0.22 0.90 16 26 C -0.11 0.62 9.43 22.49 0.21 0.83 16 27 C -0.09 0.70 9.42 22.46 0.21 0.91 16 28 C -0.11 0.79 8.48 22.33 0.19 0.98 16 29 C -0.10 0.63 7.19 31.14 0.22 0.86 16 30 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 32 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 33 H 0.08 0.24 7.40 -2.39 -0.02 0.23 16 34 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.06 0.81 5.42 -2.39 -0.01 0.80 16 36 H 0.37 1.93 8.56 -74.06 -0.63 1.30 16 37 H -0.25 -1.68 7.11 99.48 0.71 -0.97 16 38 H -0.29 -3.25 7.11 99.48 0.71 -2.54 16 39 H 0.16 -0.50 3.26 -2.91 -0.01 -0.51 16 40 H 0.14 -0.86 6.20 -2.91 -0.02 -0.87 16 41 H 0.14 -0.96 8.06 -2.91 -0.02 -0.99 16 42 H 0.14 -0.99 8.06 -2.91 -0.02 -1.02 16 43 H 0.14 -1.31 8.06 -2.91 -0.02 -1.33 16 44 H 0.15 -1.80 6.20 -2.91 -0.02 -1.82 16 45 H 0.18 -2.80 6.20 -2.91 -0.02 -2.82 16 46 H 0.19 -3.05 7.21 -2.91 -0.02 -3.07 16 47 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 48 H 0.09 -0.11 7.38 -2.39 -0.02 -0.13 16 Total: 0.00 -33.80 404.32 -0.27 -34.07 By element: Atomic # 1 Polarization: -24.27 SS G_CDS: 0.45 Total: -23.82 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 3.86 Total: 13.06 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -6.37 Total: -44.05 kcal Atomic # 14 Polarization: 4.09 SS G_CDS: 2.07 Total: 6.16 kcal Atomic # 16 Polarization: 14.86 SS G_CDS: -0.28 Total: 14.58 kcal Total: -33.80 -0.27 -34.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2516932_13206342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.178 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds