Wall clock time and date at job start Mon Mar 8 2021 12:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47325 * 2 1 4 4 C 1.86295 * 109.46945 * 239.99712 * 2 1 3 5 5 C 1.86299 * 109.46709 * 120.00062 * 2 1 3 6 6 C 1.52996 * 109.47527 * 59.99862 * 5 2 1 7 7 C 1.53005 * 109.47419 * 179.97438 * 6 5 2 8 8 S 1.81401 * 109.47010 * 179.97438 * 7 6 5 9 9 O 1.42110 * 110.54203 * 68.37951 * 8 7 6 10 10 O 1.42096 * 110.54546 * 291.62614 * 8 7 6 11 11 O 1.52199 * 104.44949 * 180.02562 * 8 7 6 12 12 C 1.35869 * 113.99762 * 74.51620 * 11 8 7 13 13 C 1.38817 * 119.93367 * 80.09311 * 12 11 8 14 14 C 1.37930 * 120.06625 * 179.97438 * 13 12 11 15 15 C 1.39355 * 119.93223 * 0.02562 * 14 13 12 16 16 C 1.48364 * 120.06549 * 180.02562 * 15 14 13 17 17 C 1.39352 * 120.12602 * 179.72708 * 16 15 14 18 18 C 1.38009 * 119.87433 * 179.78731 * 17 16 15 19 19 C 1.38320 * 120.12331 * 0.48491 * 18 17 16 20 20 C 1.38317 * 120.25072 * 359.74157 * 19 18 17 21 21 C 1.38014 * 120.12249 * 0.02562 * 20 19 18 22 22 C 1.39399 * 119.87351 * 359.97438 * 15 14 13 23 23 C 1.37882 * 119.93391 * 359.97438 * 22 15 14 24 24 C 1.50697 * 119.97047 * 180.29441 * 23 22 15 25 25 O 1.42898 * 109.47570 * 105.36445 * 24 23 22 26 26 Si 1.86308 * 109.46878 * 345.36787 * 24 23 22 27 27 H 1.48500 * 109.47074 * 60.00214 * 26 24 23 28 28 H 1.48502 * 109.47123 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47199 * 300.00154 * 26 24 23 30 30 H 1.09010 * 109.46947 * 299.99888 * 1 2 3 31 31 H 1.08994 * 109.47193 * 59.99748 * 1 2 3 32 32 H 1.08996 * 109.47361 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47258 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47190 * 300.00253 * 3 2 1 35 35 H 1.09001 * 109.46933 * 59.99847 * 3 2 1 36 36 H 1.09000 * 109.47535 * 300.00514 * 4 2 1 37 37 H 1.09001 * 109.47312 * 60.00520 * 4 2 1 38 38 H 1.08998 * 109.47067 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.47275 * 299.99476 * 5 2 1 40 40 H 1.09010 * 109.46932 * 180.02562 * 5 2 1 41 41 H 1.09001 * 109.46771 * 59.99814 * 6 5 2 42 42 H 1.08998 * 109.46983 * 299.99821 * 6 5 2 43 43 H 1.08997 * 109.46975 * 59.99864 * 7 6 5 44 44 H 1.08998 * 109.47251 * 300.00090 * 7 6 5 45 45 H 1.08002 * 119.96277 * 359.97438 * 13 12 11 46 46 H 1.07998 * 120.03290 * 180.02562 * 14 13 12 47 47 H 1.08000 * 120.06167 * 0.02562 * 17 16 15 48 48 H 1.08003 * 119.93513 * 180.24955 * 18 17 16 49 49 H 1.08014 * 119.87545 * 179.77073 * 19 18 17 50 50 H 1.08003 * 119.94291 * 180.02562 * 20 19 18 51 51 H 1.07999 * 120.06836 * 179.97438 * 21 20 19 52 52 H 1.08000 * 120.03224 * 180.02562 * 22 15 14 53 53 H 1.08996 * 109.47677 * 225.36878 * 24 23 22 54 54 H 0.96707 * 113.99340 * 65.81178 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 6 1.9739 -2.3207 1.5212 7 6 2.4843 -3.0422 2.7702 8 16 1.8789 -4.7522 2.7706 9 8 2.4907 -5.4980 1.7270 10 8 0.4717 -4.7830 2.9651 11 8 2.4471 -5.3559 4.0469 12 6 1.8229 -4.9406 5.1801 13 6 0.6162 -5.5144 5.5563 14 6 -0.0195 -5.0952 6.7064 15 6 0.5507 -4.0943 7.4907 16 6 -0.1303 -3.6416 8.7286 17 6 0.4416 -2.6448 9.5168 18 6 -0.1985 -2.2245 10.6650 19 6 -1.4004 -2.7978 11.0393 20 6 -1.9702 -3.7909 10.2633 21 6 -1.3414 -4.2156 9.1105 22 6 1.7626 -3.5200 7.1104 23 6 2.3939 -3.9438 5.9602 24 6 3.7074 -3.3282 5.5518 25 8 4.7679 -4.2485 5.8171 26 14 3.9873 -1.7622 6.5215 27 1 4.0181 -2.0772 7.9724 28 1 5.2819 -1.1558 6.1196 29 1 2.8853 -0.8057 6.2459 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.5741 1.7564 0.0005 34 1 2.1207 2.2702 -0.8899 35 1 2.1207 2.2702 0.8900 36 1 2.1205 -1.9059 -1.5211 37 1 2.1207 -0.3645 -2.4111 38 1 3.5739 -0.8787 -1.5209 39 1 2.1206 -0.3644 2.4111 40 1 3.5740 -0.8779 1.5214 41 1 2.3372 -2.8345 0.6312 42 1 0.8839 -2.3207 1.5212 43 1 2.1213 -2.5284 3.6604 44 1 3.5743 -3.0422 2.7698 45 1 0.1747 -6.2898 4.9478 46 1 -0.9581 -5.5423 6.9988 47 1 1.3820 -2.1993 9.2277 48 1 0.2419 -1.4492 11.2745 49 1 -1.8960 -2.4684 11.9407 50 1 -2.9091 -4.2348 10.5599 51 1 -1.7869 -4.9914 8.5054 52 1 2.2070 -2.7444 7.7165 53 1 3.6849 -3.0970 4.4869 54 1 4.7357 -5.0513 5.2788 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2516932_14927650.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:52:55 Heat of formation + Delta-G solvation = -124.211132 kcal Electronic energy + Delta-G solvation = -35392.137774 eV Core-core repulsion = 30931.350155 eV Total energy + Delta-G solvation = -4460.787619 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 408.143 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.58635 -40.56752 -39.06375 -38.51040 -37.73935 -37.37247 -35.91554 -33.60077 -33.16722 -31.81756 -29.81160 -29.61715 -28.55501 -28.29914 -28.27458 -27.04903 -25.31068 -24.10081 -23.14073 -22.77068 -22.28224 -21.22876 -19.82085 -19.05944 -18.56853 -18.51829 -18.15868 -17.16096 -17.01630 -16.85465 -16.20771 -15.95464 -15.78443 -15.51913 -15.35166 -15.16132 -14.81046 -14.78287 -14.35878 -14.26358 -14.23142 -14.13003 -14.04520 -14.00067 -13.95490 -13.58304 -13.54945 -13.51998 -13.41622 -13.30168 -13.17200 -13.14998 -13.05064 -13.01975 -12.97116 -12.93794 -12.24935 -12.17689 -12.02157 -11.93435 -11.82566 -11.81601 -11.35106 -11.19491 -10.80565 -10.69975 -10.67512 -10.41122 -10.26372 -9.91207 -9.17178 -1.27128 -0.52457 -0.07281 0.44855 0.63415 0.87587 1.01454 1.41191 1.44212 1.88708 1.91852 2.01742 2.02186 2.21624 2.42825 2.73624 2.76381 2.95941 3.16634 3.33211 3.38472 3.49298 3.59404 3.72325 3.78330 3.84844 3.91712 3.98629 4.04992 4.10872 4.22236 4.27329 4.38184 4.46375 4.52875 4.59290 4.60871 4.65041 4.77994 4.82349 4.83925 4.84931 4.87563 4.88115 4.88248 4.89370 4.93007 5.01583 5.06385 5.10268 5.11244 5.43966 5.46718 5.57070 5.57614 5.58757 5.60859 5.67603 5.67785 6.01190 6.47423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.068 2.932 3 C -0.463 4.463 4 C -0.474 4.474 5 C -0.415 4.415 6 C -0.117 4.117 7 C -0.645 4.645 8 S 2.578 3.422 9 O -0.963 6.963 10 O -0.971 6.971 11 O -0.663 6.663 12 C 0.051 3.949 13 C -0.091 4.091 14 C -0.095 4.095 15 C -0.013 4.013 16 C -0.074 4.074 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.124 4.124 25 O -0.541 6.541 26 Si 1.001 2.999 27 H -0.251 1.251 28 H -0.257 1.257 29 H -0.215 1.215 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.149 0.851 46 H 0.166 0.834 47 H 0.134 0.866 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.144 0.856 51 H 0.144 0.856 52 H 0.153 0.847 53 H 0.101 0.899 54 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 5.486 3.801 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.260 2.740 3 C -0.570 4.570 4 C -0.580 4.580 5 C -0.501 4.501 6 C -0.156 4.156 7 C -0.775 4.775 8 S 2.679 3.321 9 O -0.961 6.961 10 O -0.969 6.969 11 O -0.622 6.622 12 C 0.010 3.990 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.014 4.014 16 C -0.074 4.074 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.107 4.107 24 C -0.231 4.231 25 O -0.347 6.347 26 Si 0.818 3.182 27 H -0.175 1.175 28 H -0.181 1.181 29 H -0.136 1.136 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.177 0.823 44 H 0.188 0.812 45 H 0.167 0.833 46 H 0.183 0.817 47 H 0.152 0.848 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.161 0.839 51 H 0.161 0.839 52 H 0.170 0.830 53 H 0.118 0.882 54 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.347 5.874 4.437 7.483 hybrid contribution 0.094 -0.930 -1.003 1.371 sum -1.253 4.944 3.434 6.148 Atomic orbital electron populations 1.26420 1.22584 1.04396 1.04462 0.78307 0.65130 0.65428 0.65110 1.26275 1.06485 1.19845 1.04376 1.26440 1.06637 1.08364 1.16555 1.26263 1.07427 0.99364 1.17023 1.21212 1.02432 0.97822 0.94084 1.31133 1.15159 1.21031 1.10204 1.05888 0.74329 0.78551 0.73356 1.93616 1.78087 1.69826 1.54577 1.93619 1.32764 1.87044 1.83474 1.85666 1.70932 1.75788 1.29848 1.18087 0.94297 0.99626 0.86998 1.21575 0.92984 0.99404 0.97163 1.21454 1.01003 0.96099 0.92723 1.19062 0.93601 0.94915 0.93820 1.18808 0.95961 0.98411 0.94237 1.21497 1.00378 0.96610 0.95154 1.21422 0.95789 1.00499 0.96736 1.21644 0.95688 0.96013 1.00207 1.21450 1.00850 0.97429 0.94690 1.21545 0.94186 0.99799 0.97332 1.21250 0.95137 1.01150 0.95472 1.20388 0.97880 0.96537 0.95879 1.26080 0.84787 1.03525 1.08666 1.86703 1.46810 1.34028 1.67204 0.84676 0.82030 0.72489 0.78995 1.17463 1.18070 1.13624 0.90964 0.91618 0.91388 0.91069 0.91711 0.91015 0.91421 0.91625 0.91016 0.88557 0.88488 0.89402 0.89280 0.82284 0.81207 0.83302 0.81685 0.84788 0.83892 0.84071 0.83856 0.83873 0.83025 0.88199 0.76938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.74 8.65 113.37 0.98 2.72 16 2 Si 1.07 -7.62 12.19 68.60 0.84 -6.78 16 3 C -0.46 2.24 8.65 113.37 0.98 3.22 16 4 C -0.47 1.60 8.65 113.37 0.98 2.58 16 5 C -0.41 3.26 4.45 71.98 0.32 3.58 16 6 C -0.12 0.56 4.59 30.59 0.14 0.70 16 7 C -0.65 2.99 4.01 71.98 0.29 3.28 16 8 S 2.58 10.26 5.16 -56.49 -0.29 9.97 16 9 O -0.96 -10.79 18.09 -118.57 -2.15 -12.93 16 10 O -0.97 -7.75 15.61 -118.57 -1.85 -9.60 16 11 O -0.66 -2.32 8.99 -61.18 -0.55 -2.87 16 12 C 0.05 0.16 4.92 22.56 0.11 0.27 16 13 C -0.09 -0.26 8.49 22.34 0.19 -0.07 16 14 C -0.10 0.01 9.42 22.47 0.21 0.22 16 15 C -0.01 -0.01 5.88 -20.03 -0.12 -0.13 16 16 C -0.07 -0.02 5.88 -20.04 -0.12 -0.14 16 17 C -0.12 0.08 9.43 22.48 0.21 0.30 16 18 C -0.13 0.26 10.03 22.23 0.22 0.48 16 19 C -0.12 0.29 10.04 22.31 0.22 0.52 16 20 C -0.13 0.30 10.03 22.24 0.22 0.53 16 21 C -0.11 0.17 9.43 22.49 0.21 0.38 16 22 C -0.11 -0.03 8.03 22.47 0.18 0.15 16 23 C -0.10 -0.08 4.69 -19.80 -0.09 -0.17 16 24 C -0.12 0.19 1.98 71.23 0.14 0.33 16 25 O -0.54 -0.57 12.63 -148.98 -1.88 -2.46 16 26 Si 1.00 -2.68 25.73 68.60 1.76 -0.92 16 27 H -0.25 0.35 6.75 99.48 0.67 1.02 16 28 H -0.26 0.19 7.11 99.48 0.71 0.90 16 29 H -0.21 1.37 7.11 99.48 0.71 2.07 16 30 H 0.07 -0.30 7.96 -2.38 -0.02 -0.31 16 31 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 37 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.10 -0.96 7.96 -2.39 -0.02 -0.98 16 40 H 0.10 -0.97 7.96 -2.38 -0.02 -0.99 16 41 H 0.09 -0.48 7.79 -2.39 -0.02 -0.50 16 42 H 0.09 -0.51 7.79 -2.39 -0.02 -0.53 16 43 H 0.16 -1.37 6.64 -2.39 -0.02 -1.39 16 44 H 0.17 -1.67 6.96 -2.39 -0.02 -1.69 16 45 H 0.15 0.29 7.79 -2.91 -0.02 0.27 16 46 H 0.17 -0.86 6.20 -2.91 -0.02 -0.88 16 47 H 0.13 -0.51 6.20 -2.91 -0.02 -0.53 16 48 H 0.14 -0.86 8.06 -2.91 -0.02 -0.88 16 49 H 0.14 -0.89 8.06 -2.90 -0.02 -0.91 16 50 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 51 H 0.14 -0.79 6.20 -2.91 -0.02 -0.81 16 52 H 0.15 -0.43 3.02 -2.91 -0.01 -0.44 16 53 H 0.10 -0.65 3.37 -2.39 -0.01 -0.66 16 54 H 0.38 -0.97 8.68 -74.05 -0.64 -1.62 16 Total: 0.00 -20.90 438.69 2.17 -18.73 By element: Atomic # 1 Polarization: -12.87 SS G_CDS: 1.00 Total: -11.87 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.29 Total: 18.73 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -6.43 Total: -27.86 kcal Atomic # 14 Polarization: -10.30 SS G_CDS: 2.60 Total: -7.70 kcal Atomic # 16 Polarization: 10.26 SS G_CDS: -0.29 Total: 9.97 kcal Total: -20.90 2.17 -18.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2516932_14927650.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.484 kcal (2) G-P(sol) polarization free energy of solvation -20.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds