Wall clock time and date at job start Mon Mar 8 2021 10:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47362 * 2 1 4 4 C 1.34236 * 116.99742 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00082 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99743 * 180.27667 * 4 3 2 7 7 H 1.09000 * 112.85093 * 310.91835 * 6 4 3 8 8 C 1.53780 * 113.61121 * 82.22368 * 6 4 3 9 9 C 1.53785 * 87.07536 * 139.98001 * 8 6 4 10 10 F 1.39898 * 113.61393 * 89.11981 * 9 8 6 11 11 C 1.53003 * 113.61194 * 220.01656 * 9 8 6 12 12 S 1.81401 * 109.47337 * 282.49907 * 11 9 8 13 13 O 1.42111 * 110.54228 * 291.62840 * 12 11 9 14 14 O 1.42095 * 110.54415 * 68.37575 * 12 11 9 15 15 O 1.52198 * 104.44924 * 180.02562 * 12 11 9 16 16 C 1.35872 * 114.00243 * 74.13785 * 15 12 11 17 17 C 1.38811 * 119.92933 * 262.74780 * 16 15 12 18 18 C 1.50703 * 119.96855 * 359.97438 * 17 16 15 19 19 O 1.42896 * 109.47326 * 253.44539 * 18 17 16 20 20 Si 1.86300 * 109.46867 * 133.44423 * 18 17 16 21 21 C 1.37924 * 120.06259 * 179.97438 * 17 16 15 22 22 C 1.39352 * 119.93703 * 359.97438 * 21 17 16 23 23 C 1.48363 * 120.06810 * 179.97438 * 22 21 17 24 24 C 1.39349 * 120.12268 * 359.73098 * 23 22 21 25 25 C 1.38008 * 119.87775 * 179.69802 * 24 23 22 26 26 C 1.38326 * 120.12317 * 0.59563 * 25 24 23 27 27 C 1.38326 * 120.24098 * 359.67553 * 26 25 24 28 28 C 1.38009 * 120.12764 * 0.02562 * 27 26 25 29 29 C 1.39404 * 119.87113 * 0.02562 * 22 21 17 30 30 C 1.37890 * 119.93066 * 359.74539 * 29 22 21 31 31 C 1.53773 * 87.08399 * 334.56728 * 9 8 6 32 32 H 1.08993 * 109.47644 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47298 * 300.00361 * 1 2 3 34 34 H 1.09006 * 109.47107 * 59.99625 * 1 2 3 35 35 H 1.09006 * 109.46809 * 239.99648 * 2 1 3 36 36 H 1.09001 * 109.46792 * 120.00685 * 2 1 3 37 37 H 1.08998 * 113.61393 * 254.52461 * 8 6 4 38 38 H 1.08999 * 113.61540 * 25.43475 * 8 6 4 39 39 H 1.08993 * 109.47200 * 42.50375 * 11 9 8 40 40 H 1.09000 * 109.46851 * 162.50268 * 11 9 8 41 41 H 1.08994 * 109.47173 * 13.44909 * 18 17 16 42 42 H 0.96701 * 113.99824 * 66.50314 * 19 18 17 43 43 H 1.48497 * 110.00359 * 300.00304 * 20 18 17 44 44 H 1.48501 * 110.00002 * 61.32096 * 20 18 17 45 45 H 1.08009 * 120.03344 * 179.97438 * 21 17 16 46 46 H 1.08011 * 120.06012 * 359.97278 * 24 23 22 47 47 H 1.08003 * 119.94370 * 180.29708 * 25 24 23 48 48 H 1.07993 * 119.88020 * 179.70057 * 26 25 24 49 49 H 1.08010 * 119.93444 * 180.02562 * 27 26 25 50 50 H 1.08001 * 120.06077 * 180.02562 * 28 27 26 51 51 H 1.07998 * 120.03343 * 180.02562 * 29 22 21 52 52 H 1.07998 * 119.96726 * 180.27692 * 30 29 22 53 53 H 1.09005 * 113.61418 * 270.88479 * 31 9 8 54 54 H 1.09004 * 113.69515 * 139.99108 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5446 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 0.0057 7 1 3.4740 3.5836 -0.7496 8 6 3.9817 3.5724 1.4049 9 6 5.3533 4.1390 1.0019 10 9 5.2823 5.3918 0.3833 11 6 6.3917 4.0872 2.1245 12 16 6.0751 5.4290 3.3035 13 8 6.3456 6.6905 2.7077 14 8 4.8639 5.1971 4.0095 15 8 7.1610 5.2719 4.3582 16 6 8.3936 5.6676 3.9456 17 6 9.3018 4.7282 3.4772 18 6 8.9198 3.2712 3.4277 19 8 9.5981 2.5652 4.4685 20 14 9.4038 2.5582 1.7760 21 6 10.5536 5.1268 3.0572 22 6 10.9060 6.4743 3.1029 23 6 12.2519 6.9063 2.6523 24 6 13.1692 5.9658 2.1877 25 6 14.4176 6.3739 1.7639 26 6 14.7634 7.7124 1.8114 27 6 13.8589 8.6497 2.2769 28 6 12.6055 8.2535 2.6974 29 6 9.9918 7.4155 3.5737 30 6 8.7401 7.0115 3.9878 31 6 5.4584 2.9678 0.0111 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5140 0.8899 37 1 3.2241 4.3385 1.5699 38 1 4.0310 2.8433 2.2137 39 1 6.3236 3.1285 2.6383 40 1 7.3897 4.2030 1.7018 41 1 7.8429 3.1732 3.5642 42 1 9.3195 2.8157 5.3600 43 1 8.7050 3.2839 0.6850 44 1 10.8740 2.6570 1.5913 45 1 11.2601 4.3954 2.6933 46 1 12.9020 4.9197 2.1551 47 1 15.1276 5.6464 1.3991 48 1 15.7431 8.0269 1.4833 49 1 14.1340 9.6935 2.3114 50 1 11.9000 8.9862 3.0604 51 1 10.2620 8.4605 3.6098 52 1 8.0298 7.7407 4.3485 53 1 5.9114 2.0733 0.4388 54 1 5.8929 3.2443 -0.9496 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2516932_16464788.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:41:01 Heat of formation + Delta-G solvation = -165.779668 kcal Electronic energy + Delta-G solvation = -44350.413425 eV Core-core repulsion = 38649.221722 eV Total energy + Delta-G solvation = -5701.191703 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.132 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.25915 -42.73676 -41.84376 -40.66847 -39.42290 -39.14908 -38.65527 -37.76630 -37.54798 -37.50020 -33.78772 -33.28664 -32.80811 -32.19919 -31.79339 -29.89757 -27.58490 -27.32855 -26.70770 -25.41121 -24.15384 -23.96960 -22.94884 -22.70955 -22.20184 -21.35329 -20.91519 -19.94698 -19.39375 -19.11142 -18.73073 -18.67522 -18.23656 -17.79277 -17.63886 -17.43829 -17.23839 -16.87677 -16.64636 -16.33723 -16.22818 -16.10160 -15.77443 -15.49876 -15.47621 -15.42840 -15.22983 -14.76971 -14.67890 -14.54567 -14.47463 -14.41018 -14.30785 -14.17597 -14.01284 -13.72880 -13.66820 -13.62571 -13.59229 -13.42028 -13.25418 -13.13233 -13.04746 -13.01155 -12.93856 -12.60702 -12.49389 -12.25082 -12.12221 -11.96976 -11.91057 -11.54514 -11.50992 -11.48499 -11.40359 -11.36811 -10.89095 -10.41653 -9.98595 -9.27500 -5.02336 -1.51760 -0.67024 -0.20809 0.37545 0.51522 0.70140 1.00933 1.06771 1.45745 1.56410 1.79530 2.10075 2.14035 2.48058 2.56448 2.67751 2.84523 2.88172 3.03775 3.08163 3.15197 3.24380 3.31423 3.45322 3.60062 3.66664 3.74538 3.77057 3.80659 3.89608 3.96249 3.98383 4.00791 4.05539 4.10419 4.20713 4.23428 4.31454 4.34853 4.35263 4.42091 4.45301 4.51902 4.55782 4.60716 4.72306 4.73516 4.81081 4.83310 4.91184 4.93205 4.97346 5.00156 5.03254 5.14362 5.34299 5.42464 5.47819 5.49598 5.51312 5.93967 6.47337 6.61948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.524 6.524 6 C -0.105 4.105 7 H 0.150 0.850 8 C -0.152 4.152 9 C 0.095 3.905 10 F -0.184 7.184 11 C -0.684 4.684 12 S 2.588 3.412 13 O -0.959 6.959 14 O -0.938 6.938 15 O -0.655 6.655 16 C 0.045 3.955 17 C -0.115 4.115 18 C -0.104 4.104 19 O -0.532 6.532 20 Si 0.775 3.225 21 C -0.101 4.101 22 C -0.018 4.018 23 C -0.076 4.076 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.110 4.110 29 C -0.093 4.093 30 C -0.091 4.091 31 C -0.119 4.119 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.204 0.796 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.383 0.617 43 H -0.233 1.233 44 H -0.267 1.267 45 H 0.151 0.849 46 H 0.129 0.871 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.147 0.853 50 H 0.145 0.855 51 H 0.169 0.831 52 H 0.153 0.847 53 H 0.137 0.863 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -2.613 -1.784 3.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.321 3.679 5 O -0.413 6.413 6 C -0.124 4.124 7 H 0.168 0.832 8 C -0.189 4.189 9 C 0.075 3.925 10 F -0.165 7.165 11 C -0.810 4.810 12 S 2.685 3.315 13 O -0.957 6.957 14 O -0.936 6.936 15 O -0.614 6.614 16 C 0.003 3.997 17 C -0.118 4.118 18 C -0.212 4.212 19 O -0.339 6.339 20 Si 0.672 3.328 21 C -0.119 4.119 22 C -0.019 4.019 23 C -0.076 4.076 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.133 4.133 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.111 4.111 30 C -0.111 4.111 31 C -0.157 4.157 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.221 0.779 40 H 0.175 0.825 41 H 0.104 0.896 42 H 0.233 0.767 43 H -0.158 1.158 44 H -0.193 1.193 45 H 0.168 0.832 46 H 0.147 0.853 47 H 0.160 0.840 48 H 0.162 0.838 49 H 0.164 0.836 50 H 0.162 0.838 51 H 0.187 0.813 52 H 0.171 0.829 53 H 0.155 0.845 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.801 -2.532 -2.520 4.540 hybrid contribution -0.233 0.855 0.925 1.281 sum 2.568 -1.677 -1.595 3.457 Atomic orbital electron populations 1.21840 0.91065 1.04250 1.03628 1.23289 0.96702 0.79097 1.02867 1.86529 1.24167 1.33779 1.83316 1.23527 0.80712 0.92207 0.71490 1.90673 1.60893 1.43536 1.46179 1.22531 0.97435 0.91193 1.01266 0.83214 1.23954 0.95389 1.02323 0.97229 1.21357 0.95799 0.82048 0.93317 1.92983 1.97081 1.42457 1.83939 1.31759 1.10386 1.24367 1.14529 1.05665 0.74321 0.76617 0.74888 1.93647 1.83366 1.39899 1.78818 1.93641 1.43020 1.86761 1.70168 1.85706 1.28761 1.86433 1.60470 1.18121 0.81977 0.93720 1.05850 1.20532 0.94429 0.96943 0.99906 1.26018 1.01030 0.88824 1.05280 1.86711 1.66093 1.63275 1.17801 0.92952 0.80475 0.89214 0.70128 1.21240 0.95301 0.96184 0.99137 1.19155 0.93518 0.92992 0.96202 1.18798 0.92288 0.94568 1.01982 1.21454 0.94058 0.99582 0.98526 1.21418 0.96439 0.97062 0.99545 1.21663 1.00595 0.93147 0.97888 1.21475 0.93350 1.01119 0.98322 1.21552 0.97606 0.94756 0.98872 1.21509 0.91212 1.01617 0.96736 1.21603 0.98052 0.93986 0.97461 1.23697 0.93658 0.97451 1.00938 0.88498 0.91373 0.91444 0.91074 0.90854 0.87072 0.84929 0.77883 0.82534 0.89633 0.76722 1.15802 1.19273 0.83192 0.85333 0.83969 0.83811 0.83563 0.83750 0.81349 0.82882 0.84527 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.04 6.18 71.98 0.45 0.41 16 3 O -0.36 -0.72 10.22 -51.47 -0.53 -1.25 16 4 C 0.48 0.78 7.48 71.24 0.53 1.31 16 5 O -0.52 -3.03 15.65 21.98 0.34 -2.69 16 6 C -0.11 0.29 4.24 -11.01 -0.05 0.25 16 7 H 0.15 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C -0.15 0.39 6.90 31.12 0.21 0.60 16 9 C 0.09 -0.08 1.57 -10.27 -0.02 -0.10 16 10 F -0.18 -0.81 16.51 44.97 0.74 -0.06 16 11 C -0.68 1.43 3.21 71.98 0.23 1.66 16 12 S 2.59 14.41 4.91 -56.49 -0.28 14.13 16 13 O -0.96 -10.28 15.38 -118.57 -1.82 -12.10 16 14 O -0.94 -9.38 17.96 -118.57 -2.13 -11.51 16 15 O -0.65 -2.95 9.05 -61.21 -0.55 -3.50 16 16 C 0.04 0.20 4.90 22.55 0.11 0.31 16 17 C -0.12 -0.24 4.18 -19.80 -0.08 -0.32 16 18 C -0.10 0.20 2.09 71.24 0.15 0.35 16 19 O -0.53 0.76 12.63 -148.98 -1.88 -1.12 16 20 Si 0.77 -2.75 29.25 68.60 2.01 -0.75 16 21 C -0.10 -0.25 8.06 22.46 0.18 -0.06 16 22 C -0.02 -0.04 5.88 -20.03 -0.12 -0.16 16 23 C -0.08 -0.15 5.88 -20.04 -0.12 -0.27 16 24 C -0.12 -0.16 9.43 22.48 0.21 0.05 16 25 C -0.13 0.06 10.03 22.24 0.22 0.29 16 26 C -0.12 0.18 10.04 22.31 0.22 0.40 16 27 C -0.12 0.20 10.03 22.24 0.22 0.42 16 28 C -0.11 0.04 9.43 22.48 0.21 0.25 16 29 C -0.09 -0.11 9.42 22.47 0.21 0.10 16 30 C -0.09 -0.36 8.58 22.33 0.19 -0.17 16 31 C -0.12 0.48 6.86 31.12 0.21 0.69 16 32 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 35 H 0.07 -0.05 8.13 -2.38 -0.02 -0.07 16 36 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 37 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.13 -0.75 7.99 -2.39 -0.02 -0.77 16 39 H 0.20 -2.14 6.73 -2.39 -0.02 -2.16 16 40 H 0.16 -0.54 3.90 -2.39 -0.01 -0.55 16 41 H 0.09 -0.53 4.02 -2.39 -0.01 -0.54 16 42 H 0.38 -2.30 9.12 -74.06 -0.68 -2.98 16 43 H -0.23 0.83 6.27 99.48 0.62 1.45 16 44 H -0.27 -0.22 6.60 99.48 0.66 0.44 16 45 H 0.15 0.12 4.55 -2.91 -0.01 0.11 16 46 H 0.13 -0.07 6.20 -2.91 -0.02 -0.09 16 47 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 48 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 49 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 50 H 0.14 -0.67 6.20 -2.91 -0.02 -0.69 16 51 H 0.17 -0.73 6.20 -2.91 -0.02 -0.74 16 52 H 0.15 0.37 7.92 -2.91 -0.02 0.34 16 53 H 0.14 -0.88 7.39 -2.38 -0.02 -0.90 16 54 H 0.11 -0.62 8.14 -2.38 -0.02 -0.64 16 Total: 0.00 -24.18 448.64 0.05 -24.13 By element: Atomic # 1 Polarization: -12.87 SS G_CDS: 0.22 Total: -12.65 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 3.94 Total: 7.37 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -6.57 Total: -32.18 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.74 Total: -0.06 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.01 Total: -0.75 kcal Atomic # 16 Polarization: 14.41 SS G_CDS: -0.28 Total: 14.13 kcal Total: -24.18 0.05 -24.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2516932_16464788.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.649 kcal (2) G-P(sol) polarization free energy of solvation -24.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds