Wall clock time and date at job start Mon Mar 8 2021 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34750 * 117.00272 * 2 1 4 4 O 1.21509 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.47471 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39777 * 120.08965 * 179.97438 * 5 3 2 7 7 C 1.37700 * 119.90224 * 179.97438 * 6 5 3 8 8 C 1.50699 * 119.95062 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47280 * 15.99579 * 8 7 6 10 10 Si 1.86301 * 109.47067 * 255.99348 * 8 7 6 11 11 C 1.38996 * 120.09168 * 0.26030 * 7 6 5 12 12 O 1.35699 * 119.90464 * 179.72136 * 11 7 6 13 13 S 1.52196 * 113.99933 * 95.62134 * 12 11 7 14 14 O 1.42108 * 104.27436 * 192.00722 * 13 12 11 15 15 O 1.42096 * 104.28181 * 319.85889 * 13 12 11 16 16 C 1.81399 * 104.45210 * 75.93507 * 13 12 11 17 17 H 1.08998 * 112.84452 * 311.19845 * 16 13 12 18 18 C 1.53781 * 113.61259 * 82.50113 * 16 13 12 19 19 C 1.53776 * 87.07888 * 139.98502 * 18 16 13 20 20 H 1.09005 * 113.62133 * 89.11337 * 19 18 16 21 21 C 1.50699 * 113.69251 * 220.00810 * 19 18 16 22 22 O 1.20825 * 120.00421 * 97.52732 * 21 19 18 23 23 O 1.34238 * 119.99784 * 277.53530 * 21 19 18 24 24 C 1.45198 * 117.00103 * 179.97438 * 23 21 19 25 25 C 1.53779 * 113.61478 * 179.97438 * 16 13 12 26 26 C 1.39033 * 120.18625 * 359.48552 * 11 7 6 27 27 C 1.37659 * 120.09388 * 0.51188 * 26 11 7 28 28 H 1.09003 * 109.47155 * 300.00530 * 1 2 3 29 29 H 1.09001 * 109.46673 * 59.99962 * 1 2 3 30 30 H 1.08995 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.05010 * 359.95946 * 6 5 3 32 32 H 1.09002 * 109.46936 * 135.99150 * 8 7 6 33 33 H 0.96701 * 113.99796 * 57.15803 * 9 8 7 34 34 H 1.48500 * 110.00011 * 300.00012 * 10 8 7 35 35 H 1.48500 * 109.99939 * 61.32103 * 10 8 7 36 36 H 1.09004 * 113.61025 * 254.53114 * 18 16 13 37 37 H 1.08997 * 113.61684 * 25.43050 * 18 16 13 38 38 H 1.08994 * 109.47167 * 180.02562 * 24 23 21 39 39 H 1.09000 * 109.46888 * 300.00335 * 24 23 21 40 40 H 1.09003 * 109.46937 * 60.00044 * 24 23 21 41 41 H 1.09001 * 113.61636 * 334.56684 * 25 16 13 42 42 H 1.09004 * 113.61235 * 105.47250 * 25 16 13 43 43 H 1.08004 * 119.94759 * 180.25976 * 26 11 7 44 44 H 1.07999 * 120.04402 * 179.76965 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1730 2.5222 0.0000 7 6 5.5483 2.5897 0.0011 8 6 6.2358 3.9308 -0.0001 9 8 5.3002 4.9460 0.3691 10 14 6.8988 4.2873 -1.7042 11 6 6.3034 1.4227 -0.0027 12 8 7.6585 1.4937 -0.0074 13 16 8.2886 1.3886 1.3740 14 8 9.6431 1.7677 1.1710 15 8 7.4312 2.1540 2.2096 16 6 8.1762 -0.3734 1.7900 17 1 7.1808 -0.7849 1.6233 18 6 9.3056 -1.2228 1.1835 19 6 9.3404 -1.9873 2.5173 20 1 8.6637 -2.8413 2.5490 21 6 10.7323 -2.3259 2.9851 22 8 11.2842 -1.6229 3.7982 23 8 11.3592 -3.4085 2.4983 24 6 12.6982 -3.6732 2.9933 25 6 8.7636 -0.7196 3.1685 26 6 5.6742 0.1829 0.0031 27 6 4.2997 0.1064 0.0021 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5870 3.4294 -0.0015 32 1 7.0587 3.9178 0.7147 33 1 4.8815 4.8011 1.2286 34 1 7.8730 3.2386 -2.0998 35 1 5.7830 4.3391 -2.6827 36 1 8.9871 -1.8333 0.3385 37 1 10.2155 -0.6582 0.9799 38 1 13.0892 -4.5738 2.5201 39 1 13.3461 -2.8288 2.7578 40 1 12.6647 -3.8151 4.0736 41 1 9.5253 -0.0175 3.5074 42 1 8.0073 -0.9238 3.9265 43 1 6.2647 -0.7214 0.0043 44 1 3.8118 -0.8570 0.0029 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2787268_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:30:50 Heat of formation + Delta-G solvation = -230.060815 kcal Electronic energy + Delta-G solvation = -34963.297138 eV Core-core repulsion = 29942.698865 eV Total energy + Delta-G solvation = -5020.598273 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.094 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.84063 -41.99966 -41.56320 -39.78392 -39.59874 -38.47624 -37.83629 -37.56721 -37.41890 -37.35753 -33.14767 -32.41919 -30.03014 -28.98594 -27.94907 -27.43155 -27.25254 -25.84554 -23.92995 -23.20252 -22.69105 -21.65724 -20.99312 -20.03896 -19.63824 -19.19852 -18.97545 -18.53517 -18.22609 -18.12194 -17.65681 -17.54165 -17.51734 -17.05482 -16.69908 -16.42302 -16.20702 -15.80787 -15.43586 -15.18096 -14.90525 -14.71448 -14.61770 -14.52630 -14.30555 -14.16301 -14.06911 -14.02806 -13.97862 -13.62724 -13.59815 -13.40211 -13.31525 -13.25320 -13.19533 -12.90317 -12.70377 -12.18760 -12.10817 -11.94597 -11.90527 -11.88669 -11.81695 -11.79034 -11.49737 -11.40146 -10.55454 -10.13374 -4.93033 -1.49564 -0.76484 -0.32064 0.64747 0.99863 1.03035 1.34063 1.40700 1.54549 1.70101 1.94937 2.15865 2.21713 2.35125 2.60073 2.79937 2.94926 2.96978 3.07581 3.25014 3.31789 3.43596 3.60502 3.67158 3.70619 3.81501 3.88237 4.04011 4.09302 4.11025 4.12857 4.13645 4.13825 4.18546 4.26207 4.27713 4.37608 4.38164 4.48479 4.52989 4.53718 4.66099 4.73142 4.74878 5.12791 5.16690 5.25664 6.40391 6.48393 6.58245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.508 3.492 4 O -0.491 6.491 5 C -0.105 4.105 6 C -0.029 4.029 7 C -0.098 4.098 8 C -0.086 4.086 9 O -0.528 6.528 10 Si 0.752 3.248 11 C 0.103 3.897 12 O -0.659 6.659 13 S 2.589 3.411 14 O -0.907 6.907 15 O -0.937 6.937 16 C -0.654 4.654 17 H 0.164 0.836 18 C -0.093 4.093 19 C -0.095 4.095 20 H 0.139 0.861 21 C 0.467 3.533 22 O -0.498 6.498 23 O -0.355 6.355 24 C 0.033 3.967 25 C -0.086 4.086 26 C -0.146 4.146 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.085 0.915 33 H 0.373 0.627 34 H -0.233 1.233 35 H -0.247 1.247 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.156 0.844 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -6.626 -0.824 6.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.352 3.648 4 O -0.379 6.379 5 C -0.106 4.106 6 C -0.047 4.047 7 C -0.101 4.101 8 C -0.194 4.194 9 O -0.334 6.334 10 Si 0.646 3.354 11 C 0.061 3.939 12 O -0.618 6.618 13 S 2.684 3.316 14 O -0.905 6.905 15 O -0.935 6.935 16 C -0.761 4.761 17 H 0.182 0.818 18 C -0.131 4.131 19 C -0.115 4.115 20 H 0.157 0.843 21 C 0.309 3.691 22 O -0.384 6.384 23 O -0.272 6.272 24 C -0.061 4.061 25 C -0.124 4.124 26 C -0.165 4.165 27 C -0.062 4.062 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.183 0.817 32 H 0.103 0.897 33 H 0.221 0.779 34 H -0.156 1.156 35 H -0.170 1.170 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.173 0.827 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.219 -5.468 -2.074 5.974 hybrid contribution -0.767 -1.837 1.422 2.446 sum -1.986 -7.305 -0.653 7.598 Atomic orbital electron populations 1.23394 0.74869 1.04347 1.03118 1.86516 1.24401 1.31968 1.84110 1.20875 0.88592 0.81976 0.73382 1.90911 1.66495 1.35896 1.44555 1.19296 0.90102 0.94552 1.06697 1.21085 0.92463 0.98283 0.92841 1.20416 0.94144 0.95463 1.00037 1.25504 0.94593 0.84796 1.14460 1.86733 1.58954 1.45965 1.41745 0.93433 0.82639 0.88522 0.70826 1.18070 0.76598 0.94360 1.04865 1.85735 1.26105 1.91391 1.58538 1.05828 0.75162 0.77404 0.73202 1.93698 1.33987 1.80252 1.82586 1.93676 1.66104 1.66072 1.67694 1.32334 1.09064 1.25882 1.08817 0.81802 1.22687 0.96586 0.96997 0.96831 1.22412 0.91571 0.99696 0.97860 0.84303 1.23415 0.88478 0.78358 0.78864 1.90716 1.66788 1.49599 1.31335 1.86501 1.31565 1.44472 1.64633 1.23372 0.79591 1.02601 1.00513 1.22628 1.00547 0.96715 0.92555 1.21393 0.95822 0.96140 1.03171 1.21393 0.92147 0.99072 0.93562 0.91376 0.91419 0.87456 0.81741 0.89688 0.77872 1.15640 1.17042 0.87409 0.86959 0.87676 0.91516 0.91586 0.87200 0.87423 0.82693 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.07 10.57 101.05 1.07 0.99 16 2 O -0.35 0.05 9.81 -40.63 -0.40 -0.35 16 3 C 0.51 0.77 7.89 34.49 0.27 1.04 16 4 O -0.49 -2.08 16.13 -19.27 -0.31 -2.39 16 5 C -0.10 -0.03 5.87 -104.98 -0.62 -0.65 16 6 C -0.03 -0.03 8.74 -39.20 -0.34 -0.37 16 7 C -0.10 -0.17 3.98 -104.54 -0.42 -0.58 16 8 C -0.09 -0.16 2.42 36.01 0.09 -0.08 16 9 O -0.53 -0.63 11.49 -35.23 -0.40 -1.03 16 10 Si 0.75 1.05 32.35 -169.99 -5.50 -4.45 16 11 C 0.10 0.08 4.35 -39.01 -0.17 -0.09 16 12 O -0.66 -0.82 8.61 -51.13 -0.44 -1.26 16 13 S 2.59 3.48 4.94 -107.50 -0.53 2.95 16 14 O -0.91 -3.98 17.27 -67.04 -1.16 -5.13 16 15 O -0.94 -2.77 15.07 -67.04 -1.01 -3.78 16 16 C -0.65 1.79 3.93 -25.92 -0.10 1.69 16 17 H 0.16 -0.98 5.62 -51.93 -0.29 -1.27 16 18 C -0.09 0.27 7.19 -25.92 -0.19 0.08 16 19 C -0.10 0.23 4.26 -90.98 -0.39 -0.16 16 20 H 0.14 -0.72 8.14 -51.93 -0.42 -1.15 16 21 C 0.47 0.46 7.49 36.01 0.27 0.73 16 22 O -0.50 -2.05 15.65 -18.75 -0.29 -2.34 16 23 O -0.36 -0.15 10.57 -39.28 -0.42 -0.56 16 24 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 25 C -0.09 0.17 6.99 -25.94 -0.18 -0.01 16 26 C -0.15 0.34 8.53 -39.50 -0.34 0.01 16 27 C -0.04 0.10 9.61 -39.21 -0.38 -0.28 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.11 -0.49 8.14 -51.93 -0.42 -0.91 16 31 H 0.17 0.14 6.65 -52.49 -0.35 -0.21 16 32 H 0.09 0.16 6.14 -51.93 -0.32 -0.16 16 33 H 0.37 -0.56 8.69 45.56 0.40 -0.17 16 34 H -0.23 -0.63 7.11 56.52 0.40 -0.23 16 35 H -0.25 -0.81 7.11 56.52 0.40 -0.41 16 36 H 0.11 -0.60 8.14 -51.93 -0.42 -1.02 16 37 H 0.11 -0.18 7.38 -51.93 -0.38 -0.56 16 38 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 39 H 0.07 -0.06 8.13 -51.93 -0.42 -0.49 16 40 H 0.07 -0.08 8.13 -51.93 -0.42 -0.50 16 41 H 0.11 -0.05 7.39 -51.93 -0.38 -0.43 16 42 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 43 H 0.16 -0.95 6.58 -52.48 -0.35 -1.30 16 44 H 0.16 -0.76 7.60 -52.49 -0.40 -1.16 16 LS Contribution 387.76 15.07 5.84 5.84 Total: 0.00 -11.82 387.76 -10.05 -21.86 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: -5.08 Total: -12.70 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.35 Total: 3.34 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -4.43 Total: -16.85 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: -5.50 Total: -4.45 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -0.53 Total: 2.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -11.82 -10.05 -21.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.198 kcal (2) G-P(sol) polarization free energy of solvation -11.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds