Wall clock time and date at job start Mon Mar 8 2021 10:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34750 * 117.00272 * 2 1 4 4 O 1.21509 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.47471 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39777 * 120.08965 * 179.97438 * 5 3 2 7 7 C 1.37700 * 119.90224 * 179.97438 * 6 5 3 8 8 C 1.50699 * 119.95062 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47280 * 15.99579 * 8 7 6 10 10 Si 1.86301 * 109.47067 * 255.99348 * 8 7 6 11 11 C 1.38996 * 120.09168 * 0.26030 * 7 6 5 12 12 O 1.35699 * 119.90464 * 179.72136 * 11 7 6 13 13 S 1.52196 * 113.99933 * 95.62134 * 12 11 7 14 14 O 1.42108 * 104.27436 * 192.00722 * 13 12 11 15 15 O 1.42096 * 104.28181 * 319.85889 * 13 12 11 16 16 C 1.81399 * 104.45210 * 75.93507 * 13 12 11 17 17 H 1.08998 * 112.84452 * 311.19845 * 16 13 12 18 18 C 1.53781 * 113.61259 * 82.50113 * 16 13 12 19 19 C 1.53776 * 87.07888 * 139.98502 * 18 16 13 20 20 H 1.09005 * 113.62133 * 89.11337 * 19 18 16 21 21 C 1.50699 * 113.69251 * 220.00810 * 19 18 16 22 22 O 1.20825 * 120.00421 * 97.52732 * 21 19 18 23 23 O 1.34238 * 119.99784 * 277.53530 * 21 19 18 24 24 C 1.45198 * 117.00103 * 179.97438 * 23 21 19 25 25 C 1.53779 * 113.61478 * 179.97438 * 16 13 12 26 26 C 1.39033 * 120.18625 * 359.48552 * 11 7 6 27 27 C 1.37659 * 120.09388 * 0.51188 * 26 11 7 28 28 H 1.09003 * 109.47155 * 300.00530 * 1 2 3 29 29 H 1.09001 * 109.46673 * 59.99962 * 1 2 3 30 30 H 1.08995 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.05010 * 359.95946 * 6 5 3 32 32 H 1.09002 * 109.46936 * 135.99150 * 8 7 6 33 33 H 0.96701 * 113.99796 * 57.15803 * 9 8 7 34 34 H 1.48500 * 110.00011 * 300.00012 * 10 8 7 35 35 H 1.48500 * 109.99939 * 61.32103 * 10 8 7 36 36 H 1.09004 * 113.61025 * 254.53114 * 18 16 13 37 37 H 1.08997 * 113.61684 * 25.43050 * 18 16 13 38 38 H 1.08994 * 109.47167 * 180.02562 * 24 23 21 39 39 H 1.09000 * 109.46888 * 300.00335 * 24 23 21 40 40 H 1.09003 * 109.46937 * 60.00044 * 24 23 21 41 41 H 1.09001 * 113.61636 * 334.56684 * 25 16 13 42 42 H 1.09004 * 113.61235 * 105.47250 * 25 16 13 43 43 H 1.08004 * 119.94759 * 180.25976 * 26 11 7 44 44 H 1.07999 * 120.04402 * 179.76965 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1730 2.5222 0.0000 7 6 5.5483 2.5897 0.0011 8 6 6.2358 3.9308 -0.0001 9 8 5.3002 4.9460 0.3691 10 14 6.8988 4.2873 -1.7042 11 6 6.3034 1.4227 -0.0027 12 8 7.6585 1.4937 -0.0074 13 16 8.2886 1.3886 1.3740 14 8 9.6431 1.7677 1.1710 15 8 7.4312 2.1540 2.2096 16 6 8.1762 -0.3734 1.7900 17 1 7.1808 -0.7849 1.6233 18 6 9.3056 -1.2228 1.1835 19 6 9.3404 -1.9873 2.5173 20 1 8.6637 -2.8413 2.5490 21 6 10.7323 -2.3259 2.9851 22 8 11.2842 -1.6229 3.7982 23 8 11.3592 -3.4085 2.4983 24 6 12.6982 -3.6732 2.9933 25 6 8.7636 -0.7196 3.1685 26 6 5.6742 0.1829 0.0031 27 6 4.2997 0.1064 0.0021 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5870 3.4294 -0.0015 32 1 7.0587 3.9178 0.7147 33 1 4.8815 4.8011 1.2286 34 1 7.8730 3.2386 -2.0998 35 1 5.7830 4.3391 -2.6827 36 1 8.9871 -1.8333 0.3385 37 1 10.2155 -0.6582 0.9799 38 1 13.0892 -4.5738 2.5201 39 1 13.3461 -2.8288 2.7578 40 1 12.6647 -3.8151 4.0736 41 1 9.5253 -0.0175 3.5074 42 1 8.0073 -0.9238 3.9265 43 1 6.2647 -0.7214 0.0043 44 1 3.8118 -0.8570 0.0029 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2787268_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:30:49 Heat of formation + Delta-G solvation = -232.590171 kcal Electronic energy + Delta-G solvation = -34963.406819 eV Core-core repulsion = 29942.698865 eV Total energy + Delta-G solvation = -5020.707954 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.094 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.82536 -41.96602 -41.60640 -39.67227 -39.57976 -38.59844 -37.88271 -37.63282 -37.48643 -37.46957 -33.12152 -32.36369 -29.93396 -28.87894 -27.82463 -27.32596 -27.13617 -25.81048 -23.88152 -23.17051 -22.70037 -21.65367 -20.84145 -20.01390 -19.64150 -19.21607 -18.99004 -18.54595 -18.26079 -18.17918 -17.63846 -17.53884 -17.48721 -16.90741 -16.66968 -16.42732 -16.27217 -15.76800 -15.35693 -15.11128 -14.84987 -14.71286 -14.57414 -14.51613 -14.35082 -14.18017 -14.06322 -13.97356 -13.85758 -13.66027 -13.63789 -13.43469 -13.39688 -13.12341 -13.05647 -12.82767 -12.64274 -12.34459 -11.96384 -11.92678 -11.91266 -11.88171 -11.87345 -11.69910 -11.56740 -11.39087 -10.49526 -10.12652 -5.08581 -1.50196 -0.75516 -0.23437 0.64246 0.98718 1.00623 1.22989 1.43339 1.52926 1.65223 1.75790 2.18689 2.26680 2.43918 2.71263 2.91223 3.01999 3.16220 3.16517 3.34956 3.46443 3.57100 3.59413 3.79557 3.83308 3.89621 4.11421 4.18938 4.24124 4.25181 4.27115 4.30524 4.31403 4.34176 4.37482 4.47638 4.60561 4.63781 4.67957 4.69131 4.70554 4.77304 4.87012 4.91316 5.14294 5.26379 5.28961 6.41930 6.44870 6.57949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.510 3.490 4 O -0.529 6.529 5 C -0.117 4.117 6 C -0.039 4.039 7 C -0.121 4.121 8 C -0.096 4.096 9 O -0.536 6.536 10 Si 0.794 3.206 11 C 0.085 3.915 12 O -0.664 6.664 13 S 2.574 3.426 14 O -0.954 6.954 15 O -0.964 6.964 16 C -0.621 4.621 17 H 0.210 0.790 18 C -0.098 4.098 19 C -0.088 4.088 20 H 0.182 0.818 21 C 0.461 3.539 22 O -0.541 6.541 23 O -0.357 6.357 24 C 0.025 3.975 25 C -0.102 4.102 26 C -0.132 4.132 27 C -0.025 4.025 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.383 0.617 34 H -0.251 1.251 35 H -0.274 1.274 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.205 0.795 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 -10.430 -1.092 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.355 3.645 4 O -0.420 6.420 5 C -0.119 4.119 6 C -0.057 4.057 7 C -0.124 4.124 8 C -0.203 4.203 9 O -0.343 6.343 10 Si 0.691 3.309 11 C 0.044 3.956 12 O -0.623 6.623 13 S 2.675 3.325 14 O -0.952 6.952 15 O -0.963 6.963 16 C -0.731 4.731 17 H 0.227 0.773 18 C -0.136 4.136 19 C -0.107 4.107 20 H 0.199 0.801 21 C 0.305 3.695 22 O -0.430 6.430 23 O -0.272 6.272 24 C -0.068 4.068 25 C -0.141 4.141 26 C -0.151 4.151 27 C -0.043 4.043 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.096 0.904 33 H 0.233 0.767 34 H -0.176 1.176 35 H -0.200 1.200 36 H 0.167 0.833 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.221 0.779 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.369 -9.234 -2.348 9.818 hybrid contribution -0.431 -0.767 1.525 1.761 sum -2.801 -10.001 -0.823 10.418 Atomic orbital electron populations 1.23640 0.73862 1.06208 1.02702 1.86507 1.25375 1.30814 1.83557 1.21134 0.89059 0.81927 0.72331 1.90894 1.67370 1.37173 1.46527 1.19373 0.89676 0.95256 1.07576 1.21014 0.92287 0.98721 0.93692 1.20443 0.94500 0.95730 1.01684 1.25546 0.94748 0.85634 1.14358 1.86678 1.58976 1.46092 1.42597 0.92857 0.80623 0.87739 0.69697 1.18475 0.76345 0.95405 1.05425 1.85710 1.26507 1.91861 1.58202 1.06031 0.73993 0.79614 0.72858 1.93638 1.36101 1.82300 1.83202 1.93638 1.66086 1.68411 1.68118 1.32177 1.11645 1.20975 1.08332 0.77295 1.22865 0.95716 0.96912 0.98151 1.22647 0.89982 1.00638 0.97459 0.80078 1.24210 0.89554 0.77696 0.77999 1.90704 1.68032 1.50861 1.33428 1.86505 1.32049 1.44189 1.64484 1.23553 0.79096 1.03445 1.00702 1.22797 1.00899 0.96747 0.93634 1.21921 0.96016 0.96368 1.00825 1.21811 0.92049 0.99359 0.91068 0.91784 0.91976 0.84401 0.82815 0.90389 0.76742 1.17584 1.19997 0.83298 0.89109 0.85070 0.92340 0.91930 0.89772 0.84891 0.77852 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.14 10.57 113.37 1.20 1.05 16 2 O -0.35 0.63 9.81 -56.61 -0.56 0.07 16 3 C 0.51 1.47 7.89 70.26 0.55 2.02 16 4 O -0.53 -5.18 16.13 19.81 0.32 -4.86 16 5 C -0.12 0.01 5.87 -20.09 -0.12 -0.11 16 6 C -0.04 -0.13 8.74 22.51 0.20 0.07 16 7 C -0.12 -0.53 3.98 -19.81 -0.08 -0.61 16 8 C -0.10 -0.58 2.42 71.24 0.17 -0.41 16 9 O -0.54 -2.60 11.49 -148.98 -1.71 -4.31 16 10 Si 0.79 4.02 32.35 68.60 2.22 6.24 16 11 C 0.09 0.06 4.35 22.64 0.10 0.16 16 12 O -0.66 -1.73 8.61 -59.29 -0.51 -2.24 16 13 S 2.57 8.47 4.94 -56.49 -0.28 8.19 16 14 O -0.95 -10.74 17.27 -118.57 -2.05 -12.79 16 15 O -0.96 -7.02 15.07 -118.57 -1.79 -8.81 16 16 C -0.62 5.03 3.93 31.12 0.12 5.15 16 17 H 0.21 -3.70 5.62 -2.39 -0.01 -3.71 16 18 C -0.10 0.83 7.19 31.12 0.22 1.05 16 19 C -0.09 0.66 4.26 -11.03 -0.05 0.62 16 20 H 0.18 -2.88 8.14 -2.38 -0.02 -2.90 16 21 C 0.46 0.65 7.49 71.24 0.53 1.18 16 22 O -0.54 -5.09 15.65 21.97 0.34 -4.75 16 23 O -0.36 0.05 10.57 -51.50 -0.54 -0.49 16 24 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 25 C -0.10 0.55 6.99 31.11 0.22 0.77 16 26 C -0.13 1.09 8.53 22.32 0.19 1.28 16 27 C -0.03 0.19 9.61 22.51 0.22 0.41 16 28 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.14 -1.57 8.14 -2.39 -0.02 -1.59 16 31 H 0.15 0.68 6.65 -2.91 -0.02 0.66 16 32 H 0.08 0.53 6.14 -2.39 -0.01 0.51 16 33 H 0.38 -0.16 8.69 -74.06 -0.64 -0.80 16 34 H -0.25 -1.92 7.11 99.48 0.71 -1.21 16 35 H -0.27 -2.55 7.11 99.48 0.71 -1.84 16 36 H 0.15 -2.44 8.14 -2.38 -0.02 -2.46 16 37 H 0.09 -0.30 7.38 -2.39 -0.02 -0.31 16 38 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 40 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 41 H 0.08 0.03 7.39 -2.39 -0.02 0.01 16 42 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 43 H 0.20 -3.82 6.58 -2.91 -0.02 -3.84 16 44 H 0.20 -2.89 7.60 -2.91 -0.02 -2.91 16 Total: 0.00 -34.20 387.76 0.60 -33.60 By element: Atomic # 1 Polarization: -24.12 SS G_CDS: 0.47 Total: -23.65 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 4.68 Total: 13.79 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -6.49 Total: -38.17 kcal Atomic # 14 Polarization: 4.02 SS G_CDS: 2.22 Total: 6.24 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -0.28 Total: 8.19 kcal Total: -34.20 0.60 -33.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.989 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds