Wall clock time and date at job start Mon Mar 8 2021 11:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34753 * 116.99950 * 2 1 4 4 O 1.21508 * 119.99687 * 359.97438 * 3 2 1 5 5 C 1.47465 * 119.99943 * 179.97438 * 3 2 1 6 6 C 1.39778 * 120.09485 * 0.02562 * 5 3 2 7 7 C 1.37695 * 119.90563 * 179.97438 * 6 5 3 8 8 C 1.38994 * 120.09343 * 0.02791 * 7 6 5 9 9 O 1.35700 * 119.90626 * 179.97438 * 8 7 6 10 10 S 1.52205 * 113.99771 * 270.01822 * 9 8 7 11 11 O 1.42104 * 104.27640 * 191.07056 * 10 9 8 12 12 O 1.42101 * 104.27873 * 318.92752 * 10 9 8 13 13 C 1.81400 * 104.44724 * 75.00001 * 10 9 8 14 14 C 1.52999 * 109.46692 * 180.02562 * 13 10 9 15 15 C 1.53007 * 109.47057 * 180.02562 * 14 13 10 16 16 Si 1.86302 * 109.47132 * 180.02562 * 15 14 13 17 17 C 1.86291 * 109.47528 * 59.99451 * 16 15 14 18 18 C 1.86301 * 109.46992 * 179.97438 * 16 15 14 19 19 C 1.86304 * 109.46921 * 299.99377 * 16 15 14 20 20 C 1.39030 * 120.18848 * 359.97438 * 8 7 6 21 21 C 1.50701 * 119.95380 * 179.97438 * 20 8 7 22 22 O 1.42895 * 109.47079 * 75.00658 * 21 20 8 23 23 Si 1.86301 * 109.47149 * 195.00153 * 21 20 8 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 C 1.37658 * 120.09148 * 0.25870 * 20 8 7 28 28 H 1.09000 * 109.47191 * 60.00158 * 1 2 3 29 29 H 1.09006 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47444 * 300.00084 * 1 2 3 31 31 H 1.07994 * 120.04343 * 359.97438 * 6 5 3 32 32 H 1.07994 * 119.95273 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47388 * 299.99508 * 13 10 9 34 34 H 1.08996 * 109.47394 * 60.00237 * 13 10 9 35 35 H 1.09004 * 109.47445 * 299.99813 * 14 13 10 36 36 H 1.09000 * 109.47770 * 59.99970 * 14 13 10 37 37 H 1.09009 * 109.46842 * 299.99601 * 15 14 13 38 38 H 1.08994 * 109.47458 * 59.99386 * 15 14 13 39 39 H 1.09009 * 109.47144 * 60.00226 * 17 16 15 40 40 H 1.09002 * 109.47441 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47547 * 300.00376 * 17 16 15 42 42 H 1.08994 * 109.47526 * 59.99176 * 18 16 15 43 43 H 1.09002 * 109.47494 * 179.97438 * 18 16 15 44 44 H 1.09004 * 109.46708 * 299.99762 * 18 16 15 45 45 H 1.08998 * 109.46871 * 59.99824 * 19 16 15 46 46 H 1.08995 * 109.47291 * 180.02562 * 19 16 15 47 47 H 1.09002 * 109.47437 * 300.00553 * 19 16 15 48 48 H 1.09001 * 109.47380 * 315.00054 * 21 20 8 49 49 H 0.96708 * 113.99763 * 299.99687 * 22 21 20 50 50 H 1.08005 * 120.04576 * 179.70445 * 27 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 -0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.2995 0.1068 0.0006 7 6 5.6744 0.1834 0.0006 8 6 6.3033 1.4229 0.0012 9 8 7.6584 1.4940 0.0017 10 16 8.2761 1.5256 1.3924 11 8 9.6377 1.8619 1.1636 12 8 7.4237 2.3865 2.1350 13 6 8.1338 -0.1814 1.9897 14 6 8.7269 -0.2804 3.3966 15 6 8.6075 -1.7203 3.9002 16 14 9.3289 -1.8407 5.6136 17 6 8.4006 -0.7028 6.7598 18 6 9.1828 -3.5937 6.2271 19 6 11.1245 -1.3460 5.5675 20 6 5.5480 2.5902 0.0012 21 6 6.2354 3.9312 0.0024 22 8 6.7638 4.1968 -1.2984 23 14 5.0085 5.2576 0.4569 24 1 4.4592 4.9816 1.8087 25 1 3.9024 5.2692 -0.5339 26 1 5.6857 6.5792 0.4575 27 6 4.1731 2.5225 0.0061 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8116 -0.8566 0.0006 32 1 6.2648 -0.7208 0.0010 33 1 7.0831 -0.4701 2.0176 34 1 8.6760 -0.8475 1.3187 35 1 9.7776 0.0085 3.3692 36 1 8.1843 0.3857 4.0674 37 1 7.5568 -2.0096 3.9276 38 1 9.1502 -2.3861 3.2293 39 1 7.3500 -0.9923 6.7869 40 1 8.8230 -0.7730 7.7622 41 1 8.4857 0.3229 6.4011 42 1 9.7256 -4.2598 5.5565 43 1 9.6053 -3.6644 7.2294 44 1 8.1321 -3.8827 6.2541 45 1 11.2096 -0.3203 5.2086 46 1 11.5468 -1.4169 6.5698 47 1 11.6678 -2.0117 4.8968 48 1 7.0473 3.9228 0.7297 49 1 7.4109 3.5448 -1.6007 50 1 3.5870 3.4298 0.0109 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2787268_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:29:54 Heat of formation + Delta-G solvation = -239.187915 kcal Electronic energy + Delta-G solvation = -33338.463733 eV Core-core repulsion = 28775.542004 eV Total energy + Delta-G solvation = -4562.921730 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 390.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.81186 -41.54851 -39.50002 -38.43308 -37.79019 -37.54470 -37.29867 -36.12512 -33.30424 -32.37389 -29.82431 -28.90779 -28.62918 -28.50140 -28.46448 -27.20741 -25.78045 -23.81829 -23.24380 -22.48312 -21.54779 -19.83872 -19.51819 -18.92509 -18.72242 -18.20718 -18.00095 -17.50214 -17.10213 -16.98562 -16.44920 -16.09103 -15.80889 -15.59390 -15.24507 -15.01484 -14.81098 -14.56482 -14.46888 -14.33266 -14.27786 -14.18055 -14.13506 -14.04060 -13.77683 -13.73304 -13.45617 -13.43072 -13.34489 -13.29794 -13.25129 -13.24621 -13.21358 -13.17945 -12.97335 -12.15554 -12.11909 -12.05203 -11.92624 -11.83355 -11.79699 -11.45667 -11.13716 -10.92970 -10.89540 -10.70144 -10.55648 -10.33170 -1.44094 -0.71290 -0.29640 0.73823 1.08532 1.16796 1.41832 1.56678 1.59091 1.61784 1.74772 1.76381 1.98627 2.13824 2.33976 2.51099 2.66439 3.06392 3.16341 3.25767 3.38367 3.40468 3.54747 3.67628 3.69695 3.78501 3.86608 4.05837 4.09269 4.15906 4.19954 4.28547 4.34909 4.39611 4.50491 4.52568 4.58382 4.62752 4.63836 4.67299 4.67954 4.68452 4.69001 4.70208 4.74771 4.78188 5.12866 5.13605 5.18973 5.38593 5.46648 5.48535 6.45424 6.49823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.508 3.492 4 O -0.491 6.491 5 C -0.101 4.101 6 C -0.040 4.040 7 C -0.139 4.139 8 C 0.111 3.889 9 O -0.664 6.664 10 S 2.576 3.424 11 O -0.915 6.915 12 O -0.942 6.942 13 C -0.645 4.645 14 C -0.102 4.102 15 C -0.406 4.406 16 Si 1.003 2.997 17 C -0.454 4.454 18 C -0.449 4.449 19 C -0.454 4.454 20 C -0.091 4.091 21 C -0.111 4.111 22 O -0.529 6.529 23 Si 1.007 2.993 24 H -0.237 1.237 25 H -0.244 1.244 26 H -0.245 1.245 27 C -0.042 4.042 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.371 0.629 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -7.192 1.696 7.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.352 3.648 4 O -0.379 6.379 5 C -0.103 4.103 6 C -0.058 4.058 7 C -0.159 4.159 8 C 0.070 3.930 9 O -0.623 6.623 10 S 2.673 3.327 11 O -0.913 6.913 12 O -0.940 6.940 13 C -0.773 4.773 14 C -0.141 4.141 15 C -0.491 4.491 16 Si 1.199 2.801 17 C -0.561 4.561 18 C -0.557 4.557 19 C -0.562 4.562 20 C -0.094 4.094 21 C -0.218 4.218 22 O -0.335 6.335 23 Si 0.824 3.176 24 H -0.160 1.160 25 H -0.168 1.168 26 H -0.168 1.168 27 C -0.060 4.060 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.110 0.890 49 H 0.219 0.781 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.713 -5.046 1.716 5.980 hybrid contribution 0.741 -1.792 -0.204 1.950 sum -1.973 -6.838 1.511 7.275 Atomic orbital electron populations 1.23399 0.74870 1.04350 1.03132 1.86518 1.24397 1.31891 1.84087 1.20879 0.88598 0.81995 0.73374 1.90908 1.66500 1.35940 1.44587 1.19236 0.90092 0.94402 1.06533 1.21415 0.92220 0.98968 0.93233 1.21386 0.95664 0.96357 1.02462 1.18180 0.76554 0.94209 1.04100 1.85700 1.26234 1.92216 1.58124 1.06132 0.75096 0.78179 0.73316 1.93690 1.33342 1.82181 1.82128 1.93665 1.66498 1.62196 1.71659 1.30915 1.11750 1.25183 1.09454 1.21001 1.01767 0.99994 0.91326 1.26166 1.07897 0.96940 1.18144 0.79315 0.67222 0.67395 0.66121 1.26180 1.08551 1.10567 1.10806 1.26106 1.04546 1.18705 1.06338 1.26183 1.19550 1.05731 1.04692 1.20370 0.93648 0.95772 0.99576 1.25698 1.06162 1.00480 0.89430 1.86750 1.62275 1.53272 1.31186 0.84572 0.76113 0.76400 0.80478 1.16006 1.16807 1.16782 1.21213 0.92790 0.98269 0.93699 0.91385 0.87455 0.91380 0.82163 0.82676 0.84405 0.83968 0.89837 0.89756 0.89950 0.89921 0.91149 0.91069 0.91116 0.91243 0.91116 0.91246 0.91110 0.91063 0.91131 0.89043 0.78086 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.08 10.56 101.05 1.07 0.99 16 2 O -0.35 0.09 9.81 -40.64 -0.40 -0.31 16 3 C 0.51 0.79 7.89 34.49 0.27 1.06 16 4 O -0.49 -2.13 16.13 -19.27 -0.31 -2.44 16 5 C -0.10 -0.03 5.87 -104.97 -0.62 -0.65 16 6 C -0.04 0.10 9.61 -39.20 -0.38 -0.28 16 7 C -0.14 0.37 8.43 -39.50 -0.33 0.04 16 8 C 0.11 0.01 4.75 -39.01 -0.19 -0.18 16 9 O -0.66 -0.05 9.02 -51.13 -0.46 -0.51 16 10 S 2.58 1.37 4.92 -107.50 -0.53 0.84 16 11 O -0.92 -3.53 18.09 -67.04 -1.21 -4.74 16 12 O -0.94 -2.15 14.23 -67.04 -0.95 -3.10 16 13 C -0.65 2.06 5.45 37.16 0.20 2.26 16 14 C -0.10 0.27 4.59 -26.73 -0.12 0.15 16 15 C -0.41 1.50 4.45 37.16 0.17 1.66 16 16 Si 1.00 -3.73 12.19 -169.99 -2.07 -5.80 16 17 C -0.45 1.03 8.65 101.05 0.87 1.90 16 18 C -0.45 1.12 8.65 101.05 0.87 2.00 16 19 C -0.45 0.98 8.65 101.05 0.87 1.86 16 20 C -0.09 -0.16 4.68 -104.54 -0.49 -0.64 16 21 C -0.11 -0.28 2.18 36.01 0.08 -0.20 16 22 O -0.53 -1.34 12.65 -35.23 -0.45 -1.78 16 23 Si 1.01 2.19 25.73 -169.99 -4.37 -2.18 16 24 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 25 H -0.24 -0.53 6.74 56.52 0.38 -0.15 16 26 H -0.24 -0.64 7.11 56.52 0.40 -0.24 16 27 C -0.04 -0.06 8.20 -39.20 -0.32 -0.38 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 30 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 31 H 0.16 -0.79 7.60 -52.49 -0.40 -1.19 16 32 H 0.16 -0.95 7.48 -52.49 -0.39 -1.34 16 33 H 0.14 -0.73 6.59 -51.92 -0.34 -1.07 16 34 H 0.14 -0.74 8.14 -51.93 -0.42 -1.16 16 35 H 0.08 -0.26 7.79 -51.93 -0.40 -0.67 16 36 H 0.08 -0.28 7.79 -51.93 -0.40 -0.69 16 37 H 0.08 -0.36 7.96 -51.92 -0.41 -0.77 16 38 H 0.08 -0.35 7.96 -51.93 -0.41 -0.76 16 39 H 0.07 -0.16 7.96 -51.92 -0.41 -0.58 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.15 7.79 -51.93 -0.40 -0.56 16 42 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 43 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 44 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 45 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 46 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 47 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 48 H 0.09 0.22 5.42 -51.93 -0.28 -0.06 16 49 H 0.37 0.03 8.59 45.56 0.39 0.42 16 50 H 0.16 0.25 4.46 -52.48 -0.23 0.02 16 LS Contribution 421.89 15.07 6.36 6.36 Total: 0.00 -9.34 421.89 -9.54 -18.88 By element: Atomic # 1 Polarization: -7.69 SS G_CDS: -7.10 Total: -14.79 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 1.96 Total: 9.59 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -3.78 Total: -12.89 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -6.45 Total: -7.98 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -0.53 Total: 0.84 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -9.34 -9.54 -18.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.311 kcal (2) G-P(sol) polarization free energy of solvation -9.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds