Wall clock time and date at job start Mon Mar 8 2021 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34753 * 116.99950 * 2 1 4 4 O 1.21508 * 119.99687 * 359.97438 * 3 2 1 5 5 C 1.47465 * 119.99943 * 179.97438 * 3 2 1 6 6 C 1.39778 * 120.09485 * 0.02562 * 5 3 2 7 7 C 1.37695 * 119.90563 * 179.97438 * 6 5 3 8 8 C 1.38994 * 120.09343 * 0.02791 * 7 6 5 9 9 O 1.35700 * 119.90626 * 179.97438 * 8 7 6 10 10 S 1.52205 * 113.99771 * 270.01822 * 9 8 7 11 11 O 1.42104 * 104.27640 * 191.07056 * 10 9 8 12 12 O 1.42101 * 104.27873 * 318.92752 * 10 9 8 13 13 C 1.81400 * 104.44724 * 75.00001 * 10 9 8 14 14 C 1.52999 * 109.46692 * 180.02562 * 13 10 9 15 15 C 1.53007 * 109.47057 * 180.02562 * 14 13 10 16 16 Si 1.86302 * 109.47132 * 180.02562 * 15 14 13 17 17 C 1.86291 * 109.47528 * 59.99451 * 16 15 14 18 18 C 1.86301 * 109.46992 * 179.97438 * 16 15 14 19 19 C 1.86304 * 109.46921 * 299.99377 * 16 15 14 20 20 C 1.39030 * 120.18848 * 359.97438 * 8 7 6 21 21 C 1.50701 * 119.95380 * 179.97438 * 20 8 7 22 22 O 1.42895 * 109.47079 * 75.00658 * 21 20 8 23 23 Si 1.86301 * 109.47149 * 195.00153 * 21 20 8 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 C 1.37658 * 120.09148 * 0.25870 * 20 8 7 28 28 H 1.09000 * 109.47191 * 60.00158 * 1 2 3 29 29 H 1.09006 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47444 * 300.00084 * 1 2 3 31 31 H 1.07994 * 120.04343 * 359.97438 * 6 5 3 32 32 H 1.07994 * 119.95273 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47388 * 299.99508 * 13 10 9 34 34 H 1.08996 * 109.47394 * 60.00237 * 13 10 9 35 35 H 1.09004 * 109.47445 * 299.99813 * 14 13 10 36 36 H 1.09000 * 109.47770 * 59.99970 * 14 13 10 37 37 H 1.09009 * 109.46842 * 299.99601 * 15 14 13 38 38 H 1.08994 * 109.47458 * 59.99386 * 15 14 13 39 39 H 1.09009 * 109.47144 * 60.00226 * 17 16 15 40 40 H 1.09002 * 109.47441 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47547 * 300.00376 * 17 16 15 42 42 H 1.08994 * 109.47526 * 59.99176 * 18 16 15 43 43 H 1.09002 * 109.47494 * 179.97438 * 18 16 15 44 44 H 1.09004 * 109.46708 * 299.99762 * 18 16 15 45 45 H 1.08998 * 109.46871 * 59.99824 * 19 16 15 46 46 H 1.08995 * 109.47291 * 180.02562 * 19 16 15 47 47 H 1.09002 * 109.47437 * 300.00553 * 19 16 15 48 48 H 1.09001 * 109.47380 * 315.00054 * 21 20 8 49 49 H 0.96708 * 113.99763 * 299.99687 * 22 21 20 50 50 H 1.08005 * 120.04576 * 179.70445 * 27 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 -0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.2995 0.1068 0.0006 7 6 5.6744 0.1834 0.0006 8 6 6.3033 1.4229 0.0012 9 8 7.6584 1.4940 0.0017 10 16 8.2761 1.5256 1.3924 11 8 9.6377 1.8619 1.1636 12 8 7.4237 2.3865 2.1350 13 6 8.1338 -0.1814 1.9897 14 6 8.7269 -0.2804 3.3966 15 6 8.6075 -1.7203 3.9002 16 14 9.3289 -1.8407 5.6136 17 6 8.4006 -0.7028 6.7598 18 6 9.1828 -3.5937 6.2271 19 6 11.1245 -1.3460 5.5675 20 6 5.5480 2.5902 0.0012 21 6 6.2354 3.9312 0.0024 22 8 6.7638 4.1968 -1.2984 23 14 5.0085 5.2576 0.4569 24 1 4.4592 4.9816 1.8087 25 1 3.9024 5.2692 -0.5339 26 1 5.6857 6.5792 0.4575 27 6 4.1731 2.5225 0.0061 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8116 -0.8566 0.0006 32 1 6.2648 -0.7208 0.0010 33 1 7.0831 -0.4701 2.0176 34 1 8.6760 -0.8475 1.3187 35 1 9.7776 0.0085 3.3692 36 1 8.1843 0.3857 4.0674 37 1 7.5568 -2.0096 3.9276 38 1 9.1502 -2.3861 3.2293 39 1 7.3500 -0.9923 6.7869 40 1 8.8230 -0.7730 7.7622 41 1 8.4857 0.3229 6.4011 42 1 9.7256 -4.2598 5.5565 43 1 9.6053 -3.6644 7.2294 44 1 8.1321 -3.8827 6.2541 45 1 11.2096 -0.3203 5.2086 46 1 11.5468 -1.4169 6.5698 47 1 11.6678 -2.0117 4.8968 48 1 7.0473 3.9228 0.7297 49 1 7.4109 3.5448 -1.6007 50 1 3.5870 3.4298 0.0109 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2787268_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:29:53 Heat of formation + Delta-G solvation = -236.821737 kcal Electronic energy + Delta-G solvation = -33338.361128 eV Core-core repulsion = 28775.542004 eV Total energy + Delta-G solvation = -4562.819124 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 390.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.75789 -41.58006 -39.45781 -38.49106 -37.89512 -37.60355 -37.36107 -35.84659 -33.26953 -32.31013 -29.59362 -28.78763 -28.37488 -28.29032 -28.21504 -27.23628 -25.73192 -23.72412 -23.11999 -22.34888 -21.49782 -19.79514 -19.52589 -18.90446 -18.70124 -18.27242 -18.04768 -17.51574 -16.99412 -16.92395 -16.45966 -15.95024 -15.86706 -15.57888 -15.10267 -14.90291 -14.70503 -14.53585 -14.43964 -14.20918 -14.12176 -14.05688 -13.95985 -13.94245 -13.57154 -13.55885 -13.45945 -13.38801 -13.32130 -13.19238 -13.13790 -13.03237 -12.99962 -12.95890 -12.87756 -12.35642 -12.02002 -11.92001 -11.88900 -11.86049 -11.77809 -11.52724 -11.28772 -10.69165 -10.66314 -10.48839 -10.42680 -10.25929 -1.38910 -0.66268 -0.20068 0.79281 0.96353 1.09988 1.34713 1.37714 1.46158 1.76628 1.94681 2.02644 2.03914 2.18696 2.42583 2.72310 2.76161 3.10581 3.27364 3.43431 3.47821 3.58854 3.67005 3.74910 3.81481 3.87368 4.18439 4.19689 4.26638 4.33128 4.37784 4.43268 4.47193 4.66886 4.69842 4.72014 4.77226 4.81862 4.82814 4.85340 4.88177 4.88278 4.89225 4.89791 4.91622 5.14072 5.15883 5.31179 5.49361 5.62558 5.68452 5.69093 6.39181 6.46641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.509 3.491 4 O -0.531 6.531 5 C -0.113 4.113 6 C -0.021 4.021 7 C -0.123 4.123 8 C 0.103 3.897 9 O -0.665 6.665 10 S 2.563 3.437 11 O -0.962 6.962 12 O -0.970 6.970 13 C -0.621 4.621 14 C -0.123 4.123 15 C -0.405 4.405 16 Si 1.068 2.932 17 C -0.475 4.475 18 C -0.464 4.464 19 C -0.477 4.477 20 C -0.112 4.112 21 C -0.116 4.116 22 O -0.541 6.541 23 Si 1.013 2.987 24 H -0.235 1.235 25 H -0.250 1.250 26 H -0.256 1.256 27 C -0.059 4.059 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.196 0.804 32 H 0.203 0.797 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.379 0.621 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -10.864 1.345 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.355 3.645 4 O -0.422 6.422 5 C -0.115 4.115 6 C -0.039 4.039 7 C -0.143 4.143 8 C 0.061 3.939 9 O -0.623 6.623 10 S 2.666 3.334 11 O -0.960 6.960 12 O -0.969 6.969 13 C -0.753 4.753 14 C -0.162 4.162 15 C -0.492 4.492 16 Si 1.260 2.740 17 C -0.580 4.580 18 C -0.570 4.570 19 C -0.582 4.582 20 C -0.115 4.115 21 C -0.223 4.223 22 O -0.348 6.348 23 Si 0.831 3.169 24 H -0.158 1.158 25 H -0.174 1.174 26 H -0.180 1.180 27 C -0.077 4.077 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.213 0.787 32 H 0.220 0.780 33 H 0.187 0.813 34 H 0.191 0.809 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.229 0.771 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.109 -8.682 1.375 9.323 hybrid contribution 0.856 -0.728 -0.040 1.124 sum -2.253 -9.409 1.334 9.767 Atomic orbital electron populations 1.23647 0.73871 1.06211 1.02729 1.86510 1.25366 1.30687 1.83518 1.21158 0.89104 0.81948 0.72301 1.90890 1.67403 1.37255 1.46629 1.19285 0.89632 0.95028 1.07565 1.21814 0.92197 0.99110 0.90784 1.21889 0.95751 0.96613 1.00025 1.18434 0.76434 0.94821 1.04241 1.85664 1.26285 1.92523 1.57848 1.06329 0.73890 0.80167 0.73053 1.93629 1.35475 1.84060 1.82836 1.93628 1.66526 1.64690 1.72027 1.30785 1.14357 1.20769 1.09384 1.21243 1.02153 1.01049 0.91775 1.26150 1.09234 0.96191 1.17628 0.78311 0.64775 0.65235 0.65654 1.26454 1.09206 1.11191 1.11196 1.26285 1.04714 1.19950 1.06074 1.26478 1.21810 1.05678 1.04264 1.20285 0.93825 0.95943 1.01402 1.25637 1.05987 1.01538 0.89159 1.86708 1.62693 1.53988 1.31434 0.84491 0.75941 0.75956 0.80489 1.15764 1.17421 1.17962 1.21140 0.92827 0.98680 0.95041 0.91925 0.84393 0.91789 0.78740 0.78046 0.81299 0.80896 0.89891 0.89477 0.88216 0.88465 0.90878 0.91845 0.91479 0.91037 0.91928 0.90924 0.91516 0.91816 0.90987 0.89502 0.77116 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.14 10.56 113.37 1.20 1.06 16 2 O -0.35 0.61 9.81 -56.63 -0.56 0.05 16 3 C 0.51 1.64 7.89 70.25 0.55 2.20 16 4 O -0.53 -5.47 16.13 19.81 0.32 -5.15 16 5 C -0.11 -0.02 5.87 -20.09 -0.12 -0.14 16 6 C -0.02 0.17 9.61 22.51 0.22 0.39 16 7 C -0.12 1.10 8.43 22.32 0.19 1.29 16 8 C 0.10 -0.09 4.75 22.64 0.11 0.02 16 9 O -0.66 0.26 9.02 -59.30 -0.53 -0.27 16 10 S 2.56 2.26 4.92 -56.49 -0.28 1.98 16 11 O -0.96 -8.52 18.09 -118.57 -2.15 -10.67 16 12 O -0.97 -5.39 14.23 -118.57 -1.69 -7.08 16 13 C -0.62 6.01 5.45 71.98 0.39 6.40 16 14 C -0.12 0.93 4.59 30.60 0.14 1.07 16 15 C -0.41 4.34 4.45 71.98 0.32 4.66 16 16 Si 1.07 -9.24 12.19 68.60 0.84 -8.40 16 17 C -0.47 2.22 8.65 113.37 0.98 3.20 16 18 C -0.46 2.86 8.65 113.37 0.98 3.84 16 19 C -0.48 2.05 8.65 113.37 0.98 3.03 16 20 C -0.11 -0.48 4.68 -19.81 -0.09 -0.57 16 21 C -0.12 -0.83 2.18 71.24 0.16 -0.68 16 22 O -0.54 -3.89 12.65 -148.98 -1.89 -5.78 16 23 Si 1.01 7.19 25.73 68.60 1.77 8.96 16 24 H -0.23 -1.44 7.11 99.48 0.71 -0.73 16 25 H -0.25 -1.89 6.74 99.48 0.67 -1.21 16 26 H -0.26 -2.10 7.11 99.48 0.71 -1.39 16 27 C -0.06 -0.25 8.20 22.51 0.18 -0.07 16 28 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.14 -1.57 8.14 -2.38 -0.02 -1.59 16 30 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.20 -2.87 7.60 -2.91 -0.02 -2.90 16 32 H 0.20 -3.73 7.48 -2.91 -0.02 -3.75 16 33 H 0.17 -2.66 6.59 -2.39 -0.02 -2.67 16 34 H 0.17 -2.64 8.14 -2.39 -0.02 -2.66 16 35 H 0.08 -0.61 7.79 -2.38 -0.02 -0.63 16 36 H 0.09 -0.70 7.79 -2.39 -0.02 -0.72 16 37 H 0.10 -1.34 7.96 -2.38 -0.02 -1.35 16 38 H 0.10 -1.24 7.96 -2.39 -0.02 -1.26 16 39 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 40 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 42 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 43 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 44 H 0.07 -0.48 7.96 -2.38 -0.02 -0.50 16 45 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 46 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 47 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 48 H 0.09 0.65 5.42 -2.39 -0.01 0.64 16 49 H 0.38 0.78 8.59 -74.05 -0.64 0.14 16 50 H 0.14 0.87 4.46 -2.91 -0.01 0.85 16 Total: 0.00 -26.49 421.89 3.06 -23.43 By element: Atomic # 1 Polarization: -23.81 SS G_CDS: 1.04 Total: -22.77 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.19 Total: 25.70 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -6.49 Total: -28.89 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.60 Total: 0.56 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -0.28 Total: 1.98 kcal Total: -26.49 3.06 -23.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.396 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds