Wall clock time and date at job start Mon Mar 8 2021 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34741 * 117.00110 * 2 1 4 4 O 1.21504 * 120.00201 * 359.97438 * 3 2 1 5 5 C 1.47466 * 119.99998 * 179.97438 * 3 2 1 6 6 C 1.39772 * 120.09498 * 180.02562 * 5 3 2 7 7 C 1.37702 * 119.90752 * 179.97438 * 6 5 3 8 8 C 1.50699 * 119.95427 * 179.97438 * 7 6 5 9 9 O 1.42900 * 109.46774 * 81.57790 * 8 7 6 10 10 Si 1.86298 * 109.47232 * 321.58124 * 8 7 6 11 11 C 1.38992 * 120.09091 * 0.02562 * 7 6 5 12 12 O 1.35702 * 119.90181 * 179.97438 * 11 7 6 13 13 S 1.52196 * 113.99780 * 261.25047 * 12 11 7 14 14 O 1.42100 * 104.28115 * 318.08381 * 13 12 11 15 15 O 1.42108 * 104.27240 * 190.22539 * 13 12 11 16 16 C 1.81394 * 104.44925 * 74.15897 * 13 12 11 17 17 H 1.09002 * 112.85122 * 311.19017 * 16 13 12 18 18 C 1.54053 * 113.62327 * 82.50163 * 16 13 12 19 19 C 1.53780 * 86.98647 * 139.97878 * 18 16 13 20 20 H 1.08996 * 113.61579 * 219.98322 * 19 18 16 21 21 O 1.42906 * 113.61300 * 89.16040 * 19 18 16 22 22 C 1.42906 * 113.99678 * 110.86438 * 21 19 18 23 23 C 1.50698 * 109.46684 * 179.97438 * 22 21 19 24 24 C 1.38230 * 120.00262 * 269.72489 * 23 22 21 25 25 C 1.38236 * 120.00214 * 179.79567 * 24 23 22 26 26 C 1.38240 * 119.99756 * 0.45653 * 25 24 23 27 27 C 1.38229 * 120.00012 * 359.77589 * 26 25 24 28 28 C 1.38239 * 119.99747 * 90.00194 * 23 22 21 29 29 C 1.53779 * 113.61554 * 180.02562 * 16 13 12 30 30 C 1.39028 * 120.18904 * 0.22799 * 11 7 6 31 31 C 1.37664 * 120.09339 * 359.49379 * 30 11 7 32 32 H 1.09002 * 109.46941 * 60.00327 * 1 2 3 33 33 H 1.08998 * 109.47355 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47454 * 300.00527 * 1 2 3 35 35 H 1.08001 * 120.04602 * 359.97438 * 6 5 3 36 36 H 1.08996 * 109.47526 * 201.57598 * 8 7 6 37 37 H 0.96701 * 114.00192 * 55.23046 * 9 8 7 38 38 H 1.48494 * 110.00350 * 299.99765 * 10 8 7 39 39 H 1.48502 * 110.00232 * 61.31770 * 10 8 7 40 40 H 1.08991 * 113.61324 * 25.47264 * 18 16 13 41 41 H 1.08998 * 113.69392 * 254.49592 * 18 16 13 42 42 H 1.08992 * 109.47121 * 299.99760 * 22 21 19 43 43 H 1.09000 * 109.46952 * 59.99897 * 22 21 19 44 44 H 1.08004 * 119.99919 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.99854 * 180.25732 * 25 24 23 46 46 H 1.08000 * 119.99627 * 179.79425 * 26 25 24 47 47 H 1.08002 * 120.00072 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.00139 * 359.97438 * 28 23 22 49 49 H 1.09004 * 113.62068 * 105.46723 * 29 16 13 50 50 H 1.09005 * 113.61461 * 334.56110 * 29 16 13 51 51 H 1.08000 * 119.95277 * 179.72545 * 30 11 7 52 52 H 1.07994 * 120.04656 * 180.25729 * 31 30 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1730 2.5220 0.0011 7 6 5.5484 2.5895 0.0022 8 6 6.2359 3.9306 0.0022 9 8 6.2765 4.4449 1.3348 10 14 5.2955 5.1106 -1.0905 11 6 6.3034 1.4226 0.0022 12 8 7.6586 1.4936 0.0027 13 16 8.2883 1.3151 -1.3713 14 8 7.5495 0.2538 -1.9603 15 8 9.6778 1.1811 -1.1052 16 6 7.9524 2.8775 -2.2295 17 1 6.9096 3.1857 -2.1550 18 6 8.9545 3.9968 -1.8887 19 6 8.9056 4.3824 -3.3766 20 1 9.8763 4.6588 -3.7882 21 8 7.8805 5.3276 -3.6896 22 6 8.3722 6.6195 -4.0520 23 6 7.2118 7.5303 -4.3602 24 6 6.7234 7.6150 -5.6506 25 6 5.6563 8.4472 -5.9325 26 6 5.0835 9.2019 -4.9257 27 6 5.5750 9.1207 -3.6363 28 6 6.6394 8.2852 -3.3535 29 6 8.5071 2.9245 -3.6631 30 6 5.6742 0.1828 -0.0037 31 6 4.2997 0.1063 0.0010 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 3.5871 3.4292 0.0007 36 1 7.2524 3.8178 -0.3748 37 1 6.6877 3.8477 1.9746 38 1 5.2460 4.5871 -2.4792 39 1 3.9178 5.2976 -0.5688 40 1 9.9277 3.6279 -1.5651 41 1 8.5487 4.7612 -1.2261 42 1 8.9498 7.0334 -3.2255 43 1 9.0089 6.5322 -4.9324 44 1 7.1732 7.0282 -6.4378 45 1 5.2721 8.5103 -6.9399 46 1 4.2519 9.8545 -5.1466 47 1 5.1278 9.7106 -2.8498 48 1 7.0235 8.2221 -2.3462 49 1 7.7405 2.8241 -4.4315 50 1 9.3582 2.2628 -3.8239 51 1 6.2646 -0.7215 -0.0081 52 1 3.8118 -0.8571 0.0007 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2787268_15608174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:23 Heat of formation + Delta-G solvation = -152.446403 kcal Electronic energy + Delta-G solvation = -42385.583350 eV Core-core repulsion = 36991.279223 eV Total energy + Delta-G solvation = -5394.304127 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.126 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.90734 -41.71195 -40.82970 -39.95720 -39.58977 -38.64102 -37.90667 -37.69394 -37.51191 -36.99026 -33.38458 -32.62664 -32.43213 -31.74369 -28.94590 -28.06014 -27.22912 -26.88248 -26.30644 -25.90584 -23.75692 -23.43747 -22.93637 -22.21591 -21.83870 -21.02513 -19.95846 -19.51001 -19.33377 -18.87643 -18.44217 -18.25353 -17.82349 -17.64311 -17.47086 -17.11449 -16.76482 -16.64547 -16.48242 -16.26842 -15.84509 -15.77790 -15.59633 -15.26134 -15.18375 -14.90924 -14.72950 -14.59098 -14.47884 -14.24259 -14.18626 -14.13266 -14.05733 -13.82561 -13.68140 -13.62678 -13.59211 -13.39765 -13.33732 -13.29387 -13.17221 -13.02353 -12.34276 -12.11145 -12.05581 -12.02425 -11.99831 -11.83178 -11.72741 -11.69580 -11.30675 -11.24696 -10.62782 -10.52509 -10.49606 -9.78078 -9.72232 -5.11554 -1.53584 -0.80470 -0.39487 0.37173 0.54183 0.61497 0.94393 1.02040 1.34015 1.49112 1.71142 2.03351 2.24466 2.45320 2.51896 2.78002 2.90523 2.98422 3.15042 3.21658 3.29057 3.43722 3.48480 3.55072 3.58194 3.66617 3.71926 3.95359 4.00050 4.02294 4.16050 4.20292 4.24021 4.24698 4.28175 4.32855 4.34127 4.42586 4.44248 4.52527 4.54661 4.60733 4.64972 4.65555 4.70781 4.72159 4.74052 4.80547 4.84904 4.85895 5.03264 5.13343 5.14042 5.20533 5.59122 5.66740 5.69805 6.13714 6.25525 6.33302 6.44687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.511 3.489 4 O -0.528 6.528 5 C -0.116 4.116 6 C -0.049 4.049 7 C -0.133 4.133 8 C -0.090 4.090 9 O -0.531 6.531 10 Si 0.773 3.227 11 C 0.102 3.898 12 O -0.658 6.658 13 S 2.591 3.409 14 O -0.968 6.968 15 O -0.937 6.937 16 C -0.648 4.648 17 H 0.150 0.850 18 C -0.139 4.139 19 C 0.083 3.917 20 H 0.121 0.879 21 O -0.372 6.372 22 C 0.098 3.902 23 C -0.106 4.106 24 C -0.114 4.114 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.109 4.109 29 C -0.110 4.110 30 C -0.105 4.105 31 C -0.025 4.025 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.065 0.935 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.384 0.616 38 H -0.249 1.249 39 H -0.279 1.279 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.148 0.852 49 H 0.100 0.900 50 H 0.125 0.875 51 H 0.173 0.827 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 1.667 -1.463 2.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.356 3.644 4 O -0.419 6.419 5 C -0.118 4.118 6 C -0.067 4.067 7 C -0.136 4.136 8 C -0.199 4.199 9 O -0.338 6.338 10 Si 0.673 3.327 11 C 0.060 3.940 12 O -0.616 6.616 13 S 2.690 3.310 14 O -0.966 6.966 15 O -0.935 6.935 16 C -0.758 4.758 17 H 0.167 0.833 18 C -0.177 4.177 19 C 0.023 3.977 20 H 0.138 0.862 21 O -0.292 6.292 22 C 0.022 3.978 23 C -0.106 4.106 24 C -0.132 4.132 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.127 4.127 29 C -0.149 4.149 30 C -0.124 4.124 31 C -0.042 4.042 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.162 0.838 36 H 0.113 0.887 37 H 0.234 0.766 38 H -0.174 1.174 39 H -0.206 1.206 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.158 0.842 48 H 0.165 0.835 49 H 0.118 0.882 50 H 0.143 0.857 51 H 0.190 0.810 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.829 1.841 -1.929 2.792 hybrid contribution -0.346 -0.930 0.434 1.083 sum 0.483 0.910 -1.495 1.816 Atomic orbital electron populations 1.23679 0.73593 1.06337 1.02870 1.86527 1.25659 1.30704 1.83412 1.21073 0.88948 0.82003 0.72360 1.90883 1.67295 1.37095 1.46661 1.19338 0.89867 0.94954 1.07624 1.21158 0.93149 0.98109 0.94325 1.20451 0.93637 0.95770 1.03733 1.25803 1.05507 0.95859 0.92723 1.86731 1.84252 1.46338 1.16456 0.92458 0.77862 0.87336 0.75045 1.18308 0.76658 0.94428 1.04638 1.85647 1.25987 1.91995 1.57992 1.05635 0.74378 0.77498 0.73498 1.93629 1.72118 1.53417 1.77428 1.93638 1.31472 1.86387 1.82022 1.32402 1.10854 1.19693 1.12859 0.83260 1.23685 0.98178 0.95381 1.00463 1.22873 0.92817 0.88283 0.93709 0.86166 1.87977 1.32360 1.20992 1.87855 1.21586 0.93324 0.81678 1.01198 1.19836 0.98662 0.98248 0.93858 1.21313 0.96598 0.98410 0.96876 1.21427 0.96876 0.97247 1.00196 1.21518 1.00193 0.99330 0.93584 1.21517 0.97114 0.99398 0.97299 1.21450 0.95782 0.95552 0.99889 1.23055 1.02575 0.98477 0.90784 1.21781 0.95810 0.97237 0.97608 1.21759 0.92057 0.99395 0.91035 0.91734 0.84343 0.91597 0.83780 0.88728 0.76611 1.17396 1.20612 0.85059 0.86759 0.89718 0.90753 0.85184 0.85059 0.84936 0.84187 0.83471 0.88157 0.85692 0.81003 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.57 113.37 1.20 1.14 16 2 O -0.35 -0.83 9.81 -56.52 -0.55 -1.38 16 3 C 0.51 3.54 7.89 70.25 0.55 4.09 16 4 O -0.53 -6.90 16.13 19.82 0.32 -6.58 16 5 C -0.12 -0.53 5.87 -20.09 -0.12 -0.65 16 6 C -0.05 -0.30 8.19 22.51 0.18 -0.12 16 7 C -0.13 -0.50 4.25 -19.81 -0.08 -0.58 16 8 C -0.09 -0.12 2.04 71.24 0.15 0.03 16 9 O -0.53 -0.40 12.68 -148.98 -1.89 -2.29 16 10 Si 0.77 2.38 29.48 68.60 2.02 4.40 16 11 C 0.10 0.35 4.93 22.64 0.11 0.46 16 12 O -0.66 -1.97 9.13 -59.32 -0.54 -2.51 16 13 S 2.59 9.04 5.13 -56.49 -0.29 8.75 16 14 O -0.97 -7.38 15.69 -118.57 -1.86 -9.25 16 15 O -0.94 -7.26 17.28 -118.57 -2.05 -9.31 16 16 C -0.65 0.99 2.71 31.21 0.08 1.07 16 17 H 0.15 -0.07 4.03 -2.39 -0.01 -0.07 16 18 C -0.14 0.84 6.75 31.21 0.21 1.05 16 19 C 0.08 -0.52 4.36 31.14 0.14 -0.39 16 20 H 0.12 -1.39 7.88 -2.39 -0.02 -1.41 16 21 O -0.37 0.92 10.25 -148.98 -1.53 -0.61 16 22 C 0.10 -0.50 5.91 71.24 0.42 -0.08 16 23 C -0.11 0.07 5.51 -19.87 -0.11 -0.04 16 24 C -0.11 -0.07 9.70 22.27 0.22 0.15 16 25 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 26 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 27 C -0.14 0.05 10.05 22.27 0.22 0.27 16 28 C -0.11 0.14 9.70 22.27 0.22 0.36 16 29 C -0.11 0.50 7.50 31.13 0.23 0.73 16 30 C -0.10 -0.16 8.52 22.32 0.19 0.03 16 31 C -0.02 0.00 9.61 22.52 0.22 0.22 16 32 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.14 -1.18 8.14 -2.39 -0.02 -1.20 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.14 1.23 5.44 -2.91 -0.02 1.21 16 36 H 0.10 -0.23 2.49 -2.39 -0.01 -0.23 16 37 H 0.38 -1.73 9.02 -74.06 -0.67 -2.39 16 38 H -0.25 -1.55 6.91 99.48 0.69 -0.86 16 39 H -0.28 -2.58 6.47 99.48 0.64 -1.94 16 40 H 0.13 -1.07 7.43 -2.39 -0.02 -1.09 16 41 H 0.11 -0.97 6.78 -2.39 -0.02 -0.98 16 42 H 0.08 -0.77 8.09 -2.39 -0.02 -0.79 16 43 H 0.07 -0.56 8.08 -2.39 -0.02 -0.58 16 44 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 45 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 46 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 47 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 48 H 0.15 -0.91 8.06 -2.91 -0.02 -0.93 16 49 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.12 -1.02 8.10 -2.38 -0.02 -1.04 16 51 H 0.17 -0.27 7.84 -2.91 -0.02 -0.29 16 52 H 0.19 -1.07 7.60 -2.91 -0.02 -1.09 16 Total: 0.00 -25.03 438.74 -1.61 -26.64 By element: Atomic # 1 Polarization: -16.10 SS G_CDS: 0.28 Total: -15.82 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 4.48 Total: 7.96 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -8.10 Total: -31.93 kcal Atomic # 14 Polarization: 2.38 SS G_CDS: 2.02 Total: 4.40 kcal Atomic # 16 Polarization: 9.04 SS G_CDS: -0.29 Total: 8.75 kcal Total: -25.03 -1.61 -26.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_15608174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.808 kcal (2) G-P(sol) polarization free energy of solvation -25.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds