Wall clock time and date at job start Mon Mar 8 2021 12:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47389 * 2 1 4 4 C 1.34231 * 117.00451 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99918 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99919 * 180.02562 * 4 3 2 7 7 H 1.08993 * 112.90996 * 48.75103 * 6 4 3 8 8 C 1.53776 * 113.61130 * 180.02562 * 6 4 3 9 9 C 1.53784 * 87.17402 * 139.93627 * 8 6 4 10 10 F 1.39899 * 113.61098 * 89.15733 * 9 8 6 11 11 C 1.52995 * 113.61440 * 220.05553 * 9 8 6 12 12 S 1.81402 * 109.47329 * 179.97438 * 11 9 8 13 13 O 1.42095 * 110.54124 * 291.63222 * 12 11 9 14 14 O 1.42103 * 110.53709 * 68.37860 * 12 11 9 15 15 O 1.52198 * 104.44975 * 180.02562 * 12 11 9 16 16 C 1.35691 * 114.00072 * 74.16630 * 15 12 11 17 17 C 1.38994 * 119.90917 * 262.73079 * 16 15 12 18 18 C 1.50696 * 119.95072 * 359.97438 * 17 16 15 19 19 O 1.42904 * 109.47166 * 253.55707 * 18 17 16 20 20 Si 1.86298 * 109.47572 * 133.55651 * 18 17 16 21 21 C 1.37694 * 120.09611 * 179.97438 * 17 16 15 22 22 C 1.39778 * 119.90465 * 359.97438 * 21 17 16 23 23 C 1.47469 * 120.09232 * 179.97438 * 22 21 17 24 24 O 1.21503 * 119.99813 * 359.97438 * 23 22 21 25 25 O 1.34744 * 120.00217 * 179.97438 * 23 22 21 26 26 C 1.45199 * 117.00328 * 179.97438 * 25 23 22 27 27 C 1.39807 * 119.81746 * 359.97438 * 22 21 17 28 28 C 1.37665 * 119.90217 * 359.76721 * 27 22 21 29 29 C 1.53786 * 113.61204 * 277.49766 * 6 4 3 30 30 H 1.08995 * 109.47562 * 59.99741 * 1 2 3 31 31 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46828 * 299.99629 * 1 2 3 33 33 H 1.09004 * 109.47212 * 240.00209 * 2 1 3 34 34 H 1.09003 * 109.47685 * 119.99941 * 2 1 3 35 35 H 1.09003 * 113.61329 * 254.52522 * 8 6 4 36 36 H 1.08996 * 113.61847 * 25.34208 * 8 6 4 37 37 H 1.09000 * 109.47836 * 300.00279 * 11 9 8 38 38 H 1.09004 * 109.46873 * 60.00019 * 11 9 8 39 39 H 1.08996 * 109.47382 * 13.55211 * 18 17 16 40 40 H 0.96697 * 113.99814 * 66.48672 * 19 18 17 41 41 H 1.48501 * 109.99709 * 299.99974 * 20 18 17 42 42 H 1.48501 * 109.99729 * 61.31424 * 20 18 17 43 43 H 1.07997 * 120.05118 * 179.97438 * 21 17 16 44 44 H 1.08996 * 109.47361 * 300.00657 * 26 25 23 45 45 H 1.09010 * 109.46372 * 60.00286 * 26 25 23 46 46 H 1.08996 * 109.47430 * 179.97438 * 26 25 23 47 47 H 1.07995 * 120.05064 * 180.02562 * 27 22 21 48 48 H 1.08003 * 119.94992 * 180.25305 * 28 27 22 49 49 H 1.08998 * 113.61276 * 334.56890 * 29 6 4 50 50 H 1.09002 * 113.61221 * 105.38859 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.4715 3.5821 0.7554 8 6 5.4581 2.9682 -0.0013 9 6 5.3580 4.1427 -0.9890 10 9 5.2871 5.3936 -0.3666 11 6 6.3997 4.0926 -2.1084 12 16 6.1803 5.5225 -3.2029 13 8 4.9623 5.4142 -3.9267 14 8 6.5276 6.7243 -2.5288 15 8 7.2614 5.3596 -4.2618 16 6 7.0027 4.3845 -5.1692 17 6 7.5624 3.1224 -5.0090 18 6 8.4556 2.8399 -3.8285 19 8 9.8135 2.7606 -4.2668 20 14 7.9598 1.2228 -3.0475 21 6 7.3021 2.1299 -5.9272 22 6 6.4730 2.3929 -7.0214 23 6 6.1919 1.3331 -8.0076 24 8 6.6814 0.2297 -7.8698 25 8 5.3920 1.5885 -9.0615 26 6 5.1597 0.4985 -9.9922 27 6 5.9111 3.6634 -7.1783 28 6 6.1724 4.6484 -6.2528 29 6 3.9855 3.5778 -1.3967 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8902 3.2426 0.9610 36 1 5.9123 2.0748 -0.4299 37 1 7.3998 4.1160 -1.6755 38 1 6.2733 3.1741 -2.6815 39 1 8.3561 3.6421 -3.0974 40 1 10.1707 3.5976 -4.5936 41 1 6.5496 1.2923 -2.5874 42 1 8.1214 0.1163 -4.0246 43 1 7.7377 1.1496 -5.8021 44 1 6.1098 0.1749 -10.4172 45 1 4.6941 -0.3351 -9.4663 46 1 4.5004 0.8373 -10.7912 47 1 5.2698 3.8706 -8.0221 48 1 5.7354 5.6290 -6.3711 49 1 4.0372 2.8516 -2.2079 50 1 3.2274 4.3434 -1.5616 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2787268_16464788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:18:25 Heat of formation + Delta-G solvation = -273.468612 kcal Electronic energy + Delta-G solvation = -43070.629816 eV Core-core repulsion = 37267.620026 eV Total energy + Delta-G solvation = -5803.009790 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.116 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.26515 -42.93864 -41.88962 -41.70394 -39.66024 -39.38504 -38.70394 -37.89797 -37.68298 -37.59503 -37.54359 -33.56197 -32.83836 -32.42437 -32.11277 -28.90747 -27.61175 -27.34012 -26.74327 -25.92164 -24.02079 -23.71304 -22.99672 -22.36897 -21.56798 -20.96695 -20.03558 -19.54835 -19.25333 -19.19975 -18.77041 -18.37323 -18.26184 -17.83250 -17.66033 -17.62167 -17.31767 -17.17471 -16.65619 -16.51412 -16.28555 -16.12104 -15.93980 -15.58546 -15.39404 -15.18721 -14.84781 -14.74840 -14.67835 -14.64674 -14.49273 -14.36899 -14.15633 -14.09408 -13.76551 -13.71574 -13.65403 -13.63718 -13.44111 -13.24285 -13.18128 -13.04819 -12.97963 -12.95396 -12.62218 -12.53457 -12.04007 -12.03107 -11.98452 -11.97917 -11.61561 -11.59781 -11.57330 -11.46919 -11.39696 -10.59781 -10.51957 -5.08969 -1.65629 -0.86370 -0.37037 0.55502 0.94881 0.95512 1.00342 1.36032 1.39420 1.51945 1.79423 2.04612 2.11439 2.42289 2.58612 2.61166 2.77779 2.93070 3.11717 3.12621 3.16180 3.29436 3.35863 3.49677 3.55204 3.64585 3.65963 3.75623 3.91174 3.94212 4.00067 4.07146 4.16832 4.23247 4.24880 4.25120 4.28561 4.30336 4.37733 4.38425 4.55437 4.57730 4.62419 4.67327 4.74364 4.75294 4.78693 4.86279 4.99249 5.05679 5.09544 5.15330 5.37160 6.35300 6.48011 6.56342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.474 3.526 5 O -0.528 6.528 6 C -0.109 4.109 7 H 0.156 0.844 8 C -0.120 4.120 9 C 0.101 3.899 10 F -0.179 7.179 11 C -0.686 4.686 12 S 2.592 3.408 13 O -0.948 6.948 14 O -0.935 6.935 15 O -0.655 6.655 16 C 0.094 3.906 17 C -0.133 4.133 18 C -0.098 4.098 19 O -0.532 6.532 20 Si 0.773 3.227 21 C -0.041 4.041 22 C -0.115 4.115 23 C 0.510 3.490 24 O -0.528 6.528 25 O -0.348 6.348 26 C 0.028 3.972 27 C -0.025 4.025 28 C -0.101 4.101 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.201 0.799 38 H 0.163 0.837 39 H 0.095 0.905 40 H 0.386 0.614 41 H -0.228 1.228 42 H -0.281 1.281 43 H 0.148 0.852 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.138 0.862 47 H 0.186 0.814 48 H 0.173 0.827 49 H 0.117 0.883 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -1.421 -0.469 2.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.318 3.682 5 O -0.417 6.417 6 C -0.127 4.127 7 H 0.174 0.826 8 C -0.158 4.158 9 C 0.081 3.919 10 F -0.159 7.159 11 C -0.813 4.813 12 S 2.688 3.312 13 O -0.947 6.947 14 O -0.933 6.933 15 O -0.613 6.613 16 C 0.052 3.948 17 C -0.136 4.136 18 C -0.206 4.206 19 O -0.339 6.339 20 Si 0.671 3.329 21 C -0.060 4.060 22 C -0.117 4.117 23 C 0.355 3.645 24 O -0.419 6.419 25 O -0.264 6.264 26 C -0.065 4.065 27 C -0.043 4.043 28 C -0.121 4.121 29 C -0.190 4.190 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.218 0.782 38 H 0.180 0.820 39 H 0.113 0.887 40 H 0.236 0.764 41 H -0.153 1.153 42 H -0.207 1.207 43 H 0.165 0.835 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.156 0.844 47 H 0.203 0.797 48 H 0.190 0.810 49 H 0.136 0.864 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.743 -2.556 -0.574 3.793 hybrid contribution 0.194 0.462 -0.853 0.989 sum -2.550 -2.094 -1.427 3.595 Atomic orbital electron populations 1.21834 0.90843 1.04264 1.03740 1.23285 0.96862 0.79167 1.02690 1.86529 1.24134 1.33669 1.83298 1.23672 0.80721 0.92437 0.71398 1.90675 1.60980 1.43749 1.46314 1.22604 0.97787 0.90923 1.01424 0.82607 1.23705 0.93443 0.97138 1.01508 1.21245 0.95392 0.82169 0.93097 1.93006 1.97046 1.42203 1.83688 1.31759 1.12363 1.23273 1.13895 1.05570 0.73569 0.76771 0.75265 1.93655 1.46015 1.87146 1.67869 1.93672 1.82496 1.42398 1.74739 1.85711 1.67893 1.58240 1.49454 1.18361 1.00594 0.84571 0.91230 1.20484 1.01626 0.91415 1.00098 1.25895 0.84507 1.15200 0.95007 1.86741 1.22751 1.39320 1.85135 0.92819 0.81374 0.72447 0.86217 1.21131 0.93987 0.99629 0.91221 1.19361 1.02587 0.94178 0.95555 1.21115 0.75730 0.86752 0.80901 1.90890 1.50038 1.25415 1.75537 1.86527 1.61506 1.43941 1.34419 1.23667 1.03120 0.88372 0.91297 1.21751 0.95086 0.89105 0.98348 1.21767 0.95896 1.02741 0.91718 1.23927 0.96141 1.02108 0.96835 0.91359 0.88548 0.91201 0.91325 0.91002 0.85815 0.85552 0.78213 0.81982 0.88685 0.76359 1.15286 1.20733 0.83481 0.91668 0.91709 0.84442 0.79673 0.80957 0.86427 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.44 16 3 O -0.36 -0.84 10.22 -51.42 -0.53 -1.36 16 4 C 0.47 1.08 7.48 71.24 0.53 1.61 16 5 O -0.53 -3.78 15.65 21.97 0.34 -3.43 16 6 C -0.11 0.34 4.24 -11.01 -0.05 0.30 16 7 H 0.16 -1.04 8.14 -2.39 -0.02 -1.06 16 8 C -0.12 0.61 6.85 31.12 0.21 0.83 16 9 C 0.10 -0.28 1.63 -10.22 -0.02 -0.30 16 10 F -0.18 -0.27 16.29 44.97 0.73 0.46 16 11 C -0.69 2.99 3.27 71.98 0.24 3.22 16 12 S 2.59 6.35 4.88 -56.49 -0.28 6.07 16 13 O -0.95 -4.39 15.81 -118.57 -1.87 -6.26 16 14 O -0.93 -9.07 17.54 -118.57 -2.08 -11.15 16 15 O -0.65 -0.50 9.05 -59.19 -0.54 -1.04 16 16 C 0.09 0.03 4.91 22.64 0.11 0.14 16 17 C -0.13 0.00 4.18 -19.81 -0.08 -0.08 16 18 C -0.10 0.30 2.09 71.23 0.15 0.45 16 19 O -0.53 1.13 12.63 -148.98 -1.88 -0.75 16 20 Si 0.77 -2.05 29.25 68.60 2.01 -0.05 16 21 C -0.04 -0.11 8.22 22.51 0.19 0.08 16 22 C -0.11 -0.20 5.87 -20.09 -0.12 -0.32 16 23 C 0.51 2.43 7.89 70.25 0.55 2.99 16 24 O -0.53 -5.82 16.13 19.83 0.32 -5.50 16 25 O -0.35 -0.25 9.81 -56.54 -0.55 -0.81 16 26 C 0.03 -0.10 10.57 113.37 1.20 1.10 16 27 C -0.03 0.07 9.61 22.51 0.22 0.28 16 28 C -0.10 0.13 8.57 22.33 0.19 0.33 16 29 C -0.15 0.47 7.08 31.17 0.22 0.69 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.07 0.01 8.13 -2.38 -0.02 -0.01 16 34 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 35 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 36 H 0.13 -0.71 7.32 -2.39 -0.02 -0.72 16 37 H 0.20 -2.36 6.82 -2.39 -0.02 -2.38 16 38 H 0.16 -1.06 3.72 -2.39 -0.01 -1.07 16 39 H 0.10 -0.78 4.01 -2.39 -0.01 -0.79 16 40 H 0.39 -2.96 9.12 -74.06 -0.68 -3.64 16 41 H -0.23 0.77 6.21 99.48 0.62 1.39 16 42 H -0.28 -1.39 6.60 99.48 0.66 -0.73 16 43 H 0.15 0.71 5.98 -2.91 -0.02 0.69 16 44 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 46 H 0.14 -1.31 8.14 -2.39 -0.02 -1.33 16 47 H 0.19 -1.46 7.60 -2.91 -0.02 -1.48 16 48 H 0.17 -0.73 7.92 -2.91 -0.02 -0.75 16 49 H 0.12 -0.50 7.91 -2.39 -0.02 -0.52 16 50 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: 0.00 -27.01 428.94 0.66 -26.35 By element: Atomic # 1 Polarization: -15.89 SS G_CDS: 0.25 Total: -15.64 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 4.73 Total: 13.11 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -6.79 Total: -30.31 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.73 Total: 0.46 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: 2.01 Total: -0.05 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -0.28 Total: 6.07 kcal Total: -27.01 0.66 -26.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_16464788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.120 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds