Wall clock time and date at job start Mon Mar 8 2021 12:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34749 * 117.00383 * 2 1 4 4 O 1.21514 * 119.99444 * 359.97438 * 3 2 1 5 5 C 1.47468 * 120.00341 * 179.97438 * 3 2 1 6 6 C 1.39778 * 120.09142 * 179.97438 * 5 3 2 7 7 C 1.37691 * 119.90570 * 179.74158 * 6 5 3 8 8 C 1.50699 * 119.95668 * 180.29509 * 7 6 5 9 9 O 1.42903 * 109.46900 * 255.11999 * 8 7 6 10 10 Si 1.86302 * 109.46968 * 15.11790 * 8 7 6 11 11 C 1.39000 * 120.09125 * 0.53189 * 7 6 5 12 12 O 1.35702 * 119.90688 * 179.76493 * 11 7 6 13 13 S 1.52193 * 114.00167 * 95.57711 * 12 11 7 14 14 O 1.42108 * 104.27849 * 319.10025 * 13 12 11 15 15 O 1.42097 * 104.27774 * 191.24332 * 13 12 11 16 16 C 1.81403 * 104.45003 * 75.16782 * 13 12 11 17 17 C 1.52998 * 109.47176 * 174.40729 * 16 13 12 18 18 H 1.09008 * 112.90567 * 316.25485 * 17 16 13 19 19 C 1.53782 * 113.61676 * 87.50322 * 17 16 13 20 20 C 1.53784 * 87.07859 * 89.11427 * 19 17 16 21 21 O 1.42891 * 113.61683 * 270.88769 * 20 19 17 22 22 C 1.42901 * 114.00220 * 162.19025 * 21 20 19 23 23 C 1.53000 * 113.68631 * 139.99275 * 20 19 17 24 24 F 1.39906 * 109.47247 * 326.21476 * 23 20 19 25 25 F 1.39894 * 109.47062 * 86.21729 * 23 20 19 26 26 F 1.39901 * 109.46687 * 206.21664 * 23 20 19 27 27 C 1.53772 * 113.61559 * 185.00351 * 17 16 13 28 28 C 1.39036 * 120.18511 * 359.48500 * 11 7 6 29 29 C 1.37653 * 120.09491 * 0.23536 * 28 11 7 30 30 H 1.08998 * 109.46811 * 60.00902 * 1 2 3 31 31 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46992 * 300.00245 * 1 2 3 33 33 H 1.08001 * 120.04451 * 0.04239 * 6 5 3 34 34 H 1.09004 * 109.47129 * 135.11950 * 8 7 6 35 35 H 0.96707 * 113.99625 * 185.01229 * 9 8 7 36 36 H 1.48498 * 109.99940 * 300.00258 * 10 8 7 37 37 H 1.48494 * 109.99730 * 61.32031 * 10 8 7 38 38 H 1.09005 * 109.46611 * 54.41119 * 16 13 12 39 39 H 1.08998 * 109.47154 * 294.41029 * 16 13 12 40 40 H 1.09005 * 113.61019 * 334.56940 * 19 17 16 41 41 H 1.08999 * 113.69176 * 203.67760 * 19 17 16 42 42 H 1.09000 * 109.46762 * 302.62614 * 22 21 20 43 43 H 1.08997 * 109.47000 * 62.62507 * 22 21 20 44 44 H 1.08998 * 109.47169 * 182.63271 * 22 21 20 45 45 H 1.09001 * 113.61783 * 156.33638 * 27 17 16 46 46 H 1.09004 * 113.61844 * 25.43480 * 27 17 16 47 47 H 1.08002 * 119.95078 * 180.25101 * 28 11 7 48 48 H 1.08002 * 120.04813 * 179.97438 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5365 1.2777 0.0006 6 6 4.1730 2.5222 0.0000 7 6 5.5483 2.5898 0.0060 8 6 6.2358 3.9308 0.0121 9 8 6.7664 4.2000 -1.2872 10 14 5.0082 5.2558 0.4683 11 6 6.3034 1.4228 0.0013 12 8 7.6586 1.4938 0.0023 13 16 8.2831 1.3853 1.3860 14 8 7.4322 2.1634 2.2166 15 8 9.6426 1.7473 1.1862 16 6 8.1480 -0.3741 1.8068 17 6 8.8716 -0.6393 3.1286 18 1 9.8382 -0.1393 3.1909 19 6 7.9871 -0.4268 4.3685 20 6 7.5796 -1.9036 4.2337 21 8 6.4409 -2.1090 3.3953 22 6 6.2914 -3.4543 2.9373 23 6 7.4716 -2.6361 5.5726 24 9 8.4286 -2.1307 6.4592 25 9 6.1932 -2.4442 6.1073 26 9 7.6944 -4.0031 5.3755 27 6 8.9213 -2.1266 3.5160 28 6 5.6742 0.1830 0.0014 29 6 4.2998 0.1064 0.0013 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.5870 3.4293 -0.0001 34 1 7.0465 3.9201 0.7407 35 1 7.2890 5.0120 -1.3381 36 1 3.8978 5.2805 -0.5174 37 1 4.4727 5.0048 1.8304 38 1 8.6027 -0.9724 1.0173 39 1 7.0968 -0.6439 1.9076 40 1 7.1649 0.2697 4.2041 41 1 8.5502 -0.2103 5.2763 42 1 7.1906 -3.7576 2.4011 43 1 6.1378 -4.1139 3.7914 44 1 5.4318 -3.5176 2.2701 45 1 9.7410 -2.3751 4.1900 46 1 8.8534 -2.8025 2.6635 47 1 6.2647 -0.7214 0.0019 48 1 3.8118 -0.8571 0.0010 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2787268_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:45:26 Heat of formation + Delta-G solvation = -329.406185 kcal Electronic energy + Delta-G solvation = -45174.325571 eV Core-core repulsion = 38876.890527 eV Total energy + Delta-G solvation = -6297.435044 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.097 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -51.25657 -48.80438 -48.68588 -42.73349 -41.70475 -41.53841 -39.47864 -38.42857 -37.78553 -37.58484 -37.54256 -37.28605 -33.49773 -32.49390 -31.87094 -28.92029 -28.66771 -27.99810 -27.20065 -27.06159 -25.80379 -24.00585 -23.43391 -22.71150 -21.61683 -20.90652 -20.10326 -19.73959 -19.53555 -19.40179 -19.17110 -18.96039 -18.63857 -18.34518 -18.11075 -17.50495 -17.48699 -16.98852 -16.84148 -16.67488 -16.32274 -16.00321 -15.77977 -15.68011 -15.60965 -15.44954 -15.33664 -15.20933 -15.13485 -14.95270 -14.88557 -14.82066 -14.76809 -14.58851 -14.31142 -14.27540 -14.18679 -13.73227 -13.57299 -13.53666 -13.48813 -13.35818 -13.32509 -13.25026 -13.21803 -13.10031 -12.63207 -12.46697 -12.35286 -12.18934 -11.96322 -11.92892 -11.78935 -11.66431 -11.02721 -10.58794 -10.42664 -10.32060 -5.02772 -1.43587 -0.71292 -0.30696 0.76266 1.10337 1.17979 1.41344 1.43957 1.65664 1.83874 1.92989 2.12201 2.27992 2.39626 2.49962 2.63969 2.67465 2.87495 2.98555 3.01341 3.18010 3.21552 3.32314 3.36550 3.39214 3.56796 3.63515 3.74029 3.82285 3.90847 3.94764 4.05099 4.06012 4.10377 4.13836 4.15860 4.16471 4.27180 4.30455 4.35143 4.38920 4.46917 4.50804 4.53207 4.58682 4.61744 4.68628 4.73104 5.13114 5.19240 5.45746 6.49374 6.53314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.509 3.491 4 O -0.494 6.494 5 C -0.105 4.105 6 C -0.042 4.042 7 C -0.053 4.053 8 C -0.086 4.086 9 O -0.539 6.539 10 Si 0.691 3.309 11 C 0.131 3.869 12 O -0.653 6.653 13 S 2.587 3.413 14 O -0.940 6.940 15 O -0.914 6.914 16 C -0.647 4.647 17 C -0.093 4.093 18 H 0.113 0.887 19 C -0.128 4.128 20 C 0.042 3.958 21 O -0.333 6.333 22 C 0.007 3.993 23 C 0.438 3.562 24 F -0.174 7.174 25 F -0.173 7.173 26 F -0.181 7.181 27 C -0.137 4.137 28 C -0.147 4.147 29 C -0.033 4.033 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.388 0.612 36 H -0.241 1.241 37 H -0.243 1.243 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.156 0.844 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -3.338 -1.075 3.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.353 3.647 4 O -0.382 6.382 5 C -0.107 4.107 6 C -0.059 4.059 7 C -0.055 4.055 8 C -0.196 4.196 9 O -0.346 6.346 10 Si 0.590 3.410 11 C 0.089 3.911 12 O -0.611 6.611 13 S 2.682 3.318 14 O -0.939 6.939 15 O -0.912 6.912 16 C -0.773 4.773 17 C -0.112 4.112 18 H 0.131 0.869 19 C -0.165 4.165 20 C -0.001 4.001 21 O -0.250 6.250 22 C -0.089 4.089 23 C 0.383 3.617 24 F -0.155 7.155 25 F -0.154 7.154 26 F -0.162 7.162 27 C -0.175 4.175 28 C -0.166 4.166 29 C -0.051 4.051 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.236 0.764 36 H -0.166 1.166 37 H -0.167 1.167 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.173 0.827 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.812 -2.593 -1.142 2.947 hybrid contribution 0.251 -1.857 0.343 1.905 sum -0.561 -4.450 -0.799 4.556 Atomic orbital electron populations 1.23401 0.74857 1.04375 1.03117 1.86515 1.24404 1.31812 1.84058 1.20855 0.88559 0.81998 0.73274 1.90904 1.66530 1.35989 1.44793 1.19165 0.90131 0.94268 1.07092 1.21081 0.92787 0.97932 0.94126 1.19324 0.92619 0.93815 0.99787 1.24818 1.05749 0.99349 0.89653 1.86495 1.72739 1.48216 1.27137 0.94825 0.78860 0.86421 0.80870 1.18080 0.76698 0.93934 1.02434 1.85707 1.26028 1.91362 1.58029 1.05841 0.75151 0.77726 0.73102 1.93677 1.66473 1.65782 1.67943 1.93682 1.33638 1.81179 1.82694 1.30929 1.12136 1.27440 1.06765 1.21721 0.99651 0.98987 0.90840 0.86875 1.23504 1.00767 0.92306 0.99877 1.23920 0.90037 0.99055 0.87057 1.88043 1.43194 1.29396 1.64406 1.23191 1.02939 0.82433 1.00307 1.21108 0.74258 0.77874 0.88426 1.93190 1.64333 1.86937 1.71049 1.93228 1.39437 1.94792 1.87926 1.93194 1.94421 1.33492 1.95107 1.23595 0.95306 0.96744 1.01853 1.21435 0.95870 0.96270 1.03069 1.21376 0.92157 0.98894 0.92667 0.91406 0.87399 0.91382 0.82990 0.90004 0.76392 1.16559 1.16678 0.83322 0.82768 0.87280 0.85549 0.92498 0.92570 0.87834 0.86701 0.88264 0.82668 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.05 10.57 101.05 1.07 1.02 16 2 O -0.35 -0.21 9.81 -40.62 -0.40 -0.61 16 3 C 0.51 1.34 7.89 34.49 0.27 1.61 16 4 O -0.49 -2.69 16.13 -19.28 -0.31 -3.00 16 5 C -0.10 -0.17 5.87 -104.97 -0.62 -0.79 16 6 C -0.04 -0.12 8.20 -39.21 -0.32 -0.44 16 7 C -0.05 -0.16 4.81 -104.54 -0.50 -0.66 16 8 C -0.09 -0.17 2.28 36.01 0.08 -0.09 16 9 O -0.54 -0.76 12.79 -35.23 -0.45 -1.21 16 10 Si 0.69 0.34 30.28 -169.99 -5.15 -4.80 16 11 C 0.13 0.22 4.70 -39.00 -0.18 0.03 16 12 O -0.65 -1.09 9.39 -51.14 -0.48 -1.57 16 13 S 2.59 2.51 4.98 -107.50 -0.54 1.98 16 14 O -0.94 -2.45 15.03 -67.04 -1.01 -3.45 16 15 O -0.91 -3.57 18.09 -67.04 -1.21 -4.78 16 16 C -0.65 1.87 4.64 37.16 0.17 2.04 16 17 C -0.09 0.26 3.84 -89.81 -0.35 -0.09 16 18 H 0.11 -0.43 8.13 -51.92 -0.42 -0.85 16 19 C -0.13 0.24 6.90 -25.92 -0.18 0.06 16 20 C 0.04 -0.06 0.84 -89.80 -0.08 -0.14 16 21 O -0.33 0.50 8.38 -35.23 -0.30 0.20 16 22 C 0.01 -0.02 10.35 101.05 1.05 1.02 16 23 C 0.44 0.11 2.54 37.16 0.09 0.21 16 24 F -0.17 -0.08 15.80 2.25 0.04 -0.04 16 25 F -0.17 -0.36 17.12 2.25 0.04 -0.32 16 26 F -0.18 -0.08 15.29 2.25 0.03 -0.05 16 27 C -0.14 0.47 6.53 -25.92 -0.17 0.30 16 28 C -0.15 0.20 8.42 -39.50 -0.33 -0.13 16 29 C -0.03 0.04 9.61 -39.21 -0.38 -0.34 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 33 H 0.15 0.51 4.47 -52.49 -0.23 0.27 16 34 H 0.08 0.13 6.12 -51.93 -0.32 -0.19 16 35 H 0.39 -1.42 8.86 45.56 0.40 -1.02 16 36 H -0.24 -0.64 6.74 56.52 0.38 -0.26 16 37 H -0.24 -0.70 7.11 56.52 0.40 -0.30 16 38 H 0.15 -0.85 8.14 -51.92 -0.42 -1.27 16 39 H 0.15 -0.56 4.50 -51.92 -0.23 -0.79 16 40 H 0.11 -0.16 8.10 -51.93 -0.42 -0.58 16 41 H 0.13 -0.39 7.05 -51.93 -0.37 -0.76 16 42 H 0.06 -0.27 6.58 -51.93 -0.34 -0.61 16 43 H 0.06 -0.13 6.50 -51.93 -0.34 -0.47 16 44 H 0.10 -0.52 8.14 -51.93 -0.42 -0.94 16 45 H 0.11 -0.49 8.01 -51.93 -0.42 -0.90 16 46 H 0.10 -0.47 6.61 -51.93 -0.34 -0.81 16 47 H 0.16 -0.80 6.94 -52.49 -0.36 -1.17 16 48 H 0.16 -0.65 7.60 -52.49 -0.40 -1.05 16 LS Contribution 415.08 15.07 6.26 6.26 Total: 0.00 -12.37 415.08 -8.97 -21.34 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: -5.12 Total: -13.58 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.37 Total: 3.63 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -4.16 Total: -14.41 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.11 Total: -0.40 kcal Atomic # 14 Polarization: 0.34 SS G_CDS: -5.15 Total: -4.80 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -0.54 Total: 1.98 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -12.37 -8.97 -21.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -308.067 kcal (2) G-P(sol) polarization free energy of solvation -12.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -320.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -329.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds