Wall clock time and date at job start Mon Mar 8 2021 12:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34749 * 117.00383 * 2 1 4 4 O 1.21514 * 119.99444 * 359.97438 * 3 2 1 5 5 C 1.47468 * 120.00341 * 179.97438 * 3 2 1 6 6 C 1.39778 * 120.09142 * 179.97438 * 5 3 2 7 7 C 1.37691 * 119.90570 * 179.74158 * 6 5 3 8 8 C 1.50699 * 119.95668 * 180.29509 * 7 6 5 9 9 O 1.42903 * 109.46900 * 255.11999 * 8 7 6 10 10 Si 1.86302 * 109.46968 * 15.11790 * 8 7 6 11 11 C 1.39000 * 120.09125 * 0.53189 * 7 6 5 12 12 O 1.35702 * 119.90688 * 179.76493 * 11 7 6 13 13 S 1.52193 * 114.00167 * 95.57711 * 12 11 7 14 14 O 1.42108 * 104.27849 * 319.10025 * 13 12 11 15 15 O 1.42097 * 104.27774 * 191.24332 * 13 12 11 16 16 C 1.81403 * 104.45003 * 75.16782 * 13 12 11 17 17 C 1.52998 * 109.47176 * 174.40729 * 16 13 12 18 18 H 1.09008 * 112.90567 * 316.25485 * 17 16 13 19 19 C 1.53782 * 113.61676 * 87.50322 * 17 16 13 20 20 C 1.53784 * 87.07859 * 89.11427 * 19 17 16 21 21 O 1.42891 * 113.61683 * 270.88769 * 20 19 17 22 22 C 1.42901 * 114.00220 * 162.19025 * 21 20 19 23 23 C 1.53000 * 113.68631 * 139.99275 * 20 19 17 24 24 F 1.39906 * 109.47247 * 326.21476 * 23 20 19 25 25 F 1.39894 * 109.47062 * 86.21729 * 23 20 19 26 26 F 1.39901 * 109.46687 * 206.21664 * 23 20 19 27 27 C 1.53772 * 113.61559 * 185.00351 * 17 16 13 28 28 C 1.39036 * 120.18511 * 359.48500 * 11 7 6 29 29 C 1.37653 * 120.09491 * 0.23536 * 28 11 7 30 30 H 1.08998 * 109.46811 * 60.00902 * 1 2 3 31 31 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46992 * 300.00245 * 1 2 3 33 33 H 1.08001 * 120.04451 * 0.04239 * 6 5 3 34 34 H 1.09004 * 109.47129 * 135.11950 * 8 7 6 35 35 H 0.96707 * 113.99625 * 185.01229 * 9 8 7 36 36 H 1.48498 * 109.99940 * 300.00258 * 10 8 7 37 37 H 1.48494 * 109.99730 * 61.32031 * 10 8 7 38 38 H 1.09005 * 109.46611 * 54.41119 * 16 13 12 39 39 H 1.08998 * 109.47154 * 294.41029 * 16 13 12 40 40 H 1.09005 * 113.61019 * 334.56940 * 19 17 16 41 41 H 1.08999 * 113.69176 * 203.67760 * 19 17 16 42 42 H 1.09000 * 109.46762 * 302.62614 * 22 21 20 43 43 H 1.08997 * 109.47000 * 62.62507 * 22 21 20 44 44 H 1.08998 * 109.47169 * 182.63271 * 22 21 20 45 45 H 1.09001 * 113.61783 * 156.33638 * 27 17 16 46 46 H 1.09004 * 113.61844 * 25.43480 * 27 17 16 47 47 H 1.08002 * 119.95078 * 180.25101 * 28 11 7 48 48 H 1.08002 * 120.04813 * 179.97438 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5365 1.2777 0.0006 6 6 4.1730 2.5222 0.0000 7 6 5.5483 2.5898 0.0060 8 6 6.2358 3.9308 0.0121 9 8 6.7664 4.2000 -1.2872 10 14 5.0082 5.2558 0.4683 11 6 6.3034 1.4228 0.0013 12 8 7.6586 1.4938 0.0023 13 16 8.2831 1.3853 1.3860 14 8 7.4322 2.1634 2.2166 15 8 9.6426 1.7473 1.1862 16 6 8.1480 -0.3741 1.8068 17 6 8.8716 -0.6393 3.1286 18 1 9.8382 -0.1393 3.1909 19 6 7.9871 -0.4268 4.3685 20 6 7.5796 -1.9036 4.2337 21 8 6.4409 -2.1090 3.3953 22 6 6.2914 -3.4543 2.9373 23 6 7.4716 -2.6361 5.5726 24 9 8.4286 -2.1307 6.4592 25 9 6.1932 -2.4442 6.1073 26 9 7.6944 -4.0031 5.3755 27 6 8.9213 -2.1266 3.5160 28 6 5.6742 0.1830 0.0014 29 6 4.2998 0.1064 0.0013 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.5870 3.4293 -0.0001 34 1 7.0465 3.9201 0.7407 35 1 7.2890 5.0120 -1.3381 36 1 3.8978 5.2805 -0.5174 37 1 4.4727 5.0048 1.8304 38 1 8.6027 -0.9724 1.0173 39 1 7.0968 -0.6439 1.9076 40 1 7.1649 0.2697 4.2041 41 1 8.5502 -0.2103 5.2763 42 1 7.1906 -3.7576 2.4011 43 1 6.1378 -4.1139 3.7914 44 1 5.4318 -3.5176 2.2701 45 1 9.7410 -2.3751 4.1900 46 1 8.8534 -2.8025 2.6635 47 1 6.2647 -0.7214 0.0019 48 1 3.8118 -0.8571 0.0010 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2787268_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:45:25 Heat of formation + Delta-G solvation = -333.057329 kcal Electronic energy + Delta-G solvation = -45174.483896 eV Core-core repulsion = 38876.890527 eV Total energy + Delta-G solvation = -6297.593369 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.097 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.25415 -48.79072 -48.72610 -42.76619 -41.67077 -41.46738 -39.51812 -38.52713 -37.85938 -37.69009 -37.44085 -37.27437 -33.51815 -32.50415 -31.72539 -28.87813 -28.37988 -27.86068 -27.24763 -26.78352 -25.84676 -23.92638 -23.40550 -22.76050 -21.66033 -20.74011 -20.02791 -19.72438 -19.53331 -19.38448 -19.17760 -19.01897 -18.67546 -18.41395 -18.18387 -17.60975 -17.27673 -16.99605 -16.79946 -16.47454 -16.30978 -15.85839 -15.75447 -15.65993 -15.60394 -15.38422 -15.27348 -15.23831 -15.12633 -14.91468 -14.87441 -14.81408 -14.71938 -14.52929 -14.32511 -14.27551 -14.24244 -13.87921 -13.64832 -13.56157 -13.41484 -13.33475 -13.25932 -13.17078 -13.08128 -12.91273 -12.39248 -12.28804 -12.21104 -12.17529 -12.10209 -11.97589 -11.97235 -11.45919 -10.81580 -10.59520 -10.51731 -10.37844 -5.14224 -1.45423 -0.75430 -0.31558 0.74910 0.99735 1.07698 1.36012 1.51524 1.52924 1.79193 2.07079 2.08444 2.32184 2.54692 2.60749 2.68186 2.83919 2.97403 3.10503 3.17367 3.22989 3.30693 3.31793 3.40404 3.50663 3.58868 3.67327 3.80374 3.92299 4.09191 4.19140 4.21416 4.26014 4.29403 4.32977 4.35417 4.39416 4.42764 4.48873 4.55375 4.60046 4.65184 4.68083 4.68312 4.75999 4.76736 4.88260 4.89486 5.05619 5.21713 5.72753 6.36243 6.69924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.511 3.489 4 O -0.534 6.534 5 C -0.119 4.119 6 C -0.063 4.063 7 C -0.083 4.083 8 C -0.097 4.097 9 O -0.553 6.553 10 Si 0.772 3.228 11 C 0.117 3.883 12 O -0.659 6.659 13 S 2.579 3.421 14 O -0.968 6.968 15 O -0.953 6.953 16 C -0.625 4.625 17 C -0.097 4.097 18 H 0.123 0.877 19 C -0.140 4.140 20 C 0.040 3.960 21 O -0.341 6.341 22 C -0.003 4.003 23 C 0.431 3.569 24 F -0.178 7.178 25 F -0.188 7.188 26 F -0.183 7.183 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.016 4.016 30 H 0.063 0.937 31 H 0.141 0.859 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.406 0.594 36 H -0.276 1.276 37 H -0.282 1.282 38 H 0.189 0.811 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.203 0.797 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 -6.421 -1.857 6.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.356 3.644 4 O -0.425 6.425 5 C -0.121 4.121 6 C -0.081 4.081 7 C -0.085 4.085 8 C -0.207 4.207 9 O -0.363 6.363 10 Si 0.675 3.325 11 C 0.075 3.925 12 O -0.617 6.617 13 S 2.679 3.321 14 O -0.966 6.966 15 O -0.951 6.951 16 C -0.755 4.755 17 C -0.117 4.117 18 H 0.141 0.859 19 C -0.177 4.177 20 C -0.003 4.003 21 O -0.259 6.259 22 C -0.098 4.098 23 C 0.377 3.623 24 F -0.160 7.160 25 F -0.170 7.170 26 F -0.164 7.164 27 C -0.165 4.165 28 C -0.153 4.153 29 C -0.034 4.034 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.258 0.742 36 H -0.203 1.203 37 H -0.208 1.208 38 H 0.206 0.794 39 H 0.186 0.814 40 H 0.118 0.882 41 H 0.150 0.850 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.220 0.780 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.113 -5.631 -1.945 5.959 hybrid contribution -0.098 -1.028 0.639 1.214 sum 0.014 -6.659 -1.306 6.786 Atomic orbital electron populations 1.23673 0.73716 1.06369 1.02731 1.86509 1.25499 1.30438 1.83429 1.21118 0.89008 0.82019 0.72211 1.90883 1.67426 1.37349 1.46881 1.19264 0.89825 0.94939 1.08067 1.21018 0.92987 0.98210 0.95890 1.19540 0.92858 0.94974 1.01119 1.24956 1.06035 0.99813 0.89855 1.86444 1.73193 1.49741 1.26922 0.94070 0.76656 0.84869 0.76885 1.18385 0.76707 0.94686 1.02737 1.85664 1.26043 1.91842 1.58180 1.05878 0.74016 0.79642 0.72544 1.93643 1.66589 1.68109 1.68302 1.93632 1.35291 1.82990 1.83164 1.30783 1.13566 1.23066 1.08063 1.21817 0.99853 0.99874 0.90160 0.85923 1.23641 1.00967 0.92173 1.00916 1.24038 0.91214 0.98769 0.86278 1.88034 1.43337 1.30430 1.64107 1.23416 1.04832 0.81319 1.00219 1.21552 0.73508 0.78020 0.89251 1.93176 1.64371 1.86979 1.71431 1.93191 1.40601 1.94889 1.88311 1.93184 1.94369 1.33744 1.95108 1.23658 0.94137 0.96287 1.02392 1.21966 0.96038 0.96614 1.00635 1.21796 0.92134 0.99088 0.90371 0.91818 0.84129 0.91889 0.84822 0.90097 0.74202 1.20251 1.20808 0.79368 0.81442 0.88231 0.85042 0.90491 0.94117 0.85893 0.85837 0.86044 0.78021 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 10.57 113.37 1.20 1.11 16 2 O -0.34 -0.20 9.81 -56.59 -0.56 -0.75 16 3 C 0.51 3.20 7.89 70.25 0.55 3.76 16 4 O -0.53 -7.15 16.13 19.79 0.32 -6.83 16 5 C -0.12 -0.45 5.87 -20.09 -0.12 -0.57 16 6 C -0.06 -0.51 8.20 22.51 0.18 -0.33 16 7 C -0.08 -0.62 4.81 -19.81 -0.10 -0.72 16 8 C -0.10 -0.59 2.28 71.24 0.16 -0.43 16 9 O -0.55 -2.40 12.79 -148.98 -1.91 -4.31 16 10 Si 0.77 2.96 30.28 68.60 2.08 5.04 16 11 C 0.12 0.35 4.70 22.64 0.11 0.45 16 12 O -0.66 -1.99 9.39 -59.32 -0.56 -2.55 16 13 S 2.58 4.55 4.98 -56.49 -0.28 4.27 16 14 O -0.97 -6.25 15.03 -118.57 -1.78 -8.03 16 15 O -0.95 -7.92 18.09 -118.57 -2.15 -10.07 16 16 C -0.62 5.36 4.64 71.98 0.33 5.69 16 17 C -0.10 0.75 3.84 -10.27 -0.04 0.71 16 18 H 0.12 -1.13 8.13 -2.38 -0.02 -1.15 16 19 C -0.14 0.62 6.90 31.12 0.21 0.84 16 20 C 0.04 -0.18 0.84 -10.27 -0.01 -0.19 16 21 O -0.34 1.82 8.38 -148.98 -1.25 0.57 16 22 C 0.00 0.03 10.35 113.37 1.17 1.20 16 23 C 0.43 0.02 2.54 71.98 0.18 0.20 16 24 F -0.18 -0.14 15.80 44.97 0.71 0.57 16 25 F -0.19 -0.85 17.12 44.97 0.77 -0.08 16 26 F -0.18 -0.01 15.29 44.97 0.69 0.68 16 27 C -0.13 1.23 6.53 31.12 0.20 1.43 16 28 C -0.13 0.70 8.42 22.32 0.19 0.89 16 29 C -0.02 0.07 9.61 22.51 0.22 0.29 16 30 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.14 -1.41 8.14 -2.39 -0.02 -1.43 16 32 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.13 1.43 4.47 -2.91 -0.01 1.42 16 34 H 0.08 0.45 6.12 -2.38 -0.01 0.43 16 35 H 0.41 -2.48 8.86 -74.05 -0.66 -3.14 16 36 H -0.28 -2.50 6.74 99.48 0.67 -1.83 16 37 H -0.28 -2.71 7.11 99.48 0.71 -2.01 16 38 H 0.19 -3.07 8.14 -2.39 -0.02 -3.09 16 39 H 0.17 -1.80 4.50 -2.39 -0.01 -1.81 16 40 H 0.10 -0.26 8.10 -2.38 -0.02 -0.28 16 41 H 0.13 -0.80 7.05 -2.39 -0.02 -0.82 16 42 H 0.08 -1.05 6.58 -2.39 -0.02 -1.06 16 43 H 0.04 -0.25 6.50 -2.39 -0.02 -0.26 16 44 H 0.12 -1.68 8.14 -2.39 -0.02 -1.70 16 45 H 0.12 -1.37 8.01 -2.39 -0.02 -1.38 16 46 H 0.12 -1.70 6.61 -2.39 -0.02 -1.72 16 47 H 0.20 -3.12 6.94 -2.91 -0.02 -3.14 16 48 H 0.20 -2.38 7.60 -2.91 -0.02 -2.41 16 Total: 0.00 -33.79 415.08 0.97 -32.82 By element: Atomic # 1 Polarization: -26.09 SS G_CDS: 0.42 Total: -25.66 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 4.46 Total: 14.33 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -7.87 Total: -31.97 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 2.17 Total: 1.17 kcal Atomic # 14 Polarization: 2.96 SS G_CDS: 2.08 Total: 5.04 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -0.28 Total: 4.27 kcal Total: -33.79 0.97 -32.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2787268_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -300.233 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -334.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -333.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds